RLG00000018232
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000402
Physical Location & Seq
Reverse (-)
27237694 .. 27239751
2058 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018232

Sequence Viewer

Length: 708 bp
ATGGAGGGTTTCGGCGTGAGAAAAGGTGCATGGACTAAAGAGGAAGATGAACTTCTGAGACAGGTCATCGAAAAGCATGGAGAAGGAAAATGGCATCAGGTTCCTTTCAAAGCAGGCTTAAACAGATGCAGGAAGAGCTGTAGACTGAGGTGGCTAAATTATTTGAAGCCAAATATCAAGAGAGGAGAGTTTACAGTTGATGAAGTTGATATGATCATCAGACTTCATATGCTTCTAGGAAACAGGTGGTCTTTAATTGCTGGAAGACTACCGGGAAGAACAGCCAACGATGTAAAGAACTATTGGAATACTTATCAACGGAAAAAGAATCAAAAGATGACTTCAGACGCAAAAAAAAAGAAAGATAAATCCCAAAAAAACACAAACGCCCCCTTAGTTGTAAGACCTCGACCACGAACCTTCATCAAAAGGTTGAATTTTTCGGAAAGAGATGCCAATTTAGAGCATATTCATTCAGAAGAGAATTCTACCACTTCTTTACCAACAGCACCGCCACAAACTCTAGAATTAGAGAATGTAATTGATTGGTGGAAAGTTGTATCAGAAGACAGTACAGGAAGCATTGATAGAACAACATGTTCTACTCTTGGTTTAGAGGACGACTTCTTCACAAACTTCTGGGTTGAAGATATGGTACAATTGTCAAGTATAGATGGCCATGATCTAGTCAACAACTACTCCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

236

Amino Acids

27.33

Weight (kDa)

9.18

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 8 - 55 2.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 11 - 69 8.7e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 61 - 105 7.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 64 - 108 5.9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 142
AciI CCGC 2 cut(s) 512, 702
AcoI YGGCCR 1 cut(s) 676
AcsI RAATTY 2 cut(s) 436, 484
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 2 cut(s) 574, 657
AflIII ACRYGT 1 cut(s) 596
AgsI TTSAA 4 cut(s) 109, 166, 436, 647
AluBI AGCT 1 cut(s) 138
AluI AGCT 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 52
AoxI GGCC 1 cut(s) 676
ApoI RAATTY 2 cut(s) 436, 484
AsuC2I CCSGG 1 cut(s) 273
BaeI ACNNNNGTAYC 2 cut(s) 647, 680
BalI TGGCCA 1 cut(s) 678
BarI GAAGNNNNNNTAC 2 cut(s) 639, 671
BbsI GAAGAC 2 cut(s) 271, 573
BccI CCATC 1 cut(s) 668
BclI TGATCA 1 cut(s) 213
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 3 cut(s) 236, 524, 686
BfmI CTRYAG 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 3 cut(s) 103, 116, 442
BpiI GAAGAC 2 cut(s) 271, 573
BpuMI CCSGG 1 cut(s) 273
BsaXI ACNNNNNCTCC 1 cut(s) 683
BseMII CTCAG 2 cut(s) 47, 137
BseRI GAGGAG 1 cut(s) 198
BshFI GGCC 1 cut(s) 678
BsiSI CCGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 52
BsnI GGCC 1 cut(s) 678
Bsp143I GATC 2 cut(s) 213, 682
BspACI CCGC 2 cut(s) 512, 702
BspANI GGCC 1 cut(s) 678
BspCNI CTCAG 2 cut(s) 48, 138
BspLI GGNNCC 1 cut(s) 102
BspQI GCTCTTC 1 cut(s) 128
BssMI GATC 2 cut(s) 213, 682
Bst4CI ACNGT 2 cut(s) 196, 572
Bst6I CTCTTC 2 cut(s) 128, 474
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 3 cut(s) 56, 146, 394
BstKTI GATC 2 cut(s) 216, 685
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 2 cut(s) 213, 682
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 600
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 139
BstV2I GAAGAC 2 cut(s) 271, 573
BsuRI GGCC 1 cut(s) 678
Cac8I GCNNGC 1 cut(s) 115
CseI GACGC 1 cut(s) 356
Csp6I GTAC 2 cut(s) 573, 656
CviAII CATG 5 cut(s) 30, 77, 597, 680, 705
CviJI RGCY 6 cut(s) 117, 138, 154, 169, 284, 678
CviKI_1 RGCY 6 cut(s) 117, 138, 154, 169, 284, 678
CviQI GTAC 2 cut(s) 573, 656
DdeI CTNAG 3 cut(s) 56, 146, 394
DpnI GATC 2 cut(s) 215, 684
DpnII GATC 2 cut(s) 213, 682
EaeI YGGCCR 1 cut(s) 676
Eam1104I CTCTTC 2 cut(s) 128, 474
EarI CTCTTC 2 cut(s) 128, 474
Eco57I CTGAAG 1 cut(s) 327
EcoRI GAATTC 1 cut(s) 484
FaeI CATG 5 cut(s) 33, 80, 600, 683, 708
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 5 cut(s) 29, 76, 596, 679, 704
FauNDI CATATG 1 cut(s) 228
FbaI TGATCA 1 cut(s) 213
FblI GTMKAC 1 cut(s) 142
FspBI CTAG 3 cut(s) 236, 524, 686
HaeIII GGCC 1 cut(s) 678
HapII CCGG 1 cut(s) 272
HgaI GACGC 1 cut(s) 356
Hin1II CATG 5 cut(s) 33, 80, 600, 683, 708
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HinfI GANTC 1 cut(s) 328
HpaII CCGG 1 cut(s) 272
Hpy166II GTNNAC 3 cut(s) 143, 192, 691
Hpy188I TCNGA 6 cut(s) 57, 221, 346, 445, 478, 565
Hpy188III TCNNGA 2 cut(s) 178, 524
Hpy8I GTNNAC 3 cut(s) 143, 192, 691
HpyAV CCTTC 2 cut(s) 77, 430
HpyCH4III ACNGT 2 cut(s) 196, 572
HpyCH4V TGCA 2 cut(s) 29, 129
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 3 cut(s) 56, 146, 394
Hsp92II CATG 5 cut(s) 33, 80, 600, 683, 708
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 2 cut(s) 213, 682
LguI GCTCTTC 1 cut(s) 128
LpnPI CCDG 9 cut(s) 47, 83, 99, 115, 229, 246, 285, 561, 625
LweI GCATC 3 cut(s) 103, 116, 442
MaeI CTAG 3 cut(s) 236, 524, 686
MalI GATC 2 cut(s) 215, 684
MboI GATC 2 cut(s) 213, 682
MboII GAAGA 8 cut(s) 56, 145, 276, 288, 491, 578, 619, 659
MfeI CAATTG 1 cut(s) 659
MlsI TGGCCA 1 cut(s) 678
MluCI AATT 8 cut(s) 157, 255, 436, 457, 484, 527, 540, 659
MluNI TGGCCA 1 cut(s) 678
MnlI CCTC 5 cut(s) 34, 141, 176, 417, 610
Mox20I TGGCCA 1 cut(s) 678
MscI TGGCCA 1 cut(s) 678
MseI TTAA 2 cut(s) 119, 254
Msp20I TGGCCA 1 cut(s) 678
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 659
MwoI GCNNNNNNNGC 1 cut(s) 135
NciI CCSGG 1 cut(s) 273
NdeI CATATG 1 cut(s) 228
NdeII GATC 2 cut(s) 213, 682
NlaIII CATG 5 cut(s) 33, 80, 600, 683, 708
NlaIV GGNNCC 1 cut(s) 102
NspI RCATGY 1 cut(s) 600
PciI ACATGT 1 cut(s) 596
PciSI GCTCTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 328
PscI ACATGT 1 cut(s) 596
PspN4I GGNNCC 1 cut(s) 102
RsaI GTAC 2 cut(s) 574, 657
RsaNI GTAC 2 cut(s) 573, 656
SapI GCTCTTC 1 cut(s) 128
SaqAI TTAA 2 cut(s) 119, 254
Sau3AI GATC 2 cut(s) 213, 682
ScrFI CCNGG 1 cut(s) 273
SetI ASST 9 cut(s) 28, 66, 102, 140, 152, 248, 409, 422, 434
SfaNI GCATC 3 cut(s) 103, 116, 442
SfcI CTRYAG 1 cut(s) 139
Sse9I AATT 8 cut(s) 157, 255, 436, 457, 484, 527, 540, 659
SsiI CCGC 2 cut(s) 512, 702
SspMI CTAG 3 cut(s) 236, 524, 686
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 2 cut(s) 196, 572
TaqI TCGA 2 cut(s) 69, 409
TasI AATT 8 cut(s) 157, 255, 436, 457, 484, 527, 540, 659
TatI WGTACW 1 cut(s) 572
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 2 cut(s) 119, 254
Tru9I TTAA 2 cut(s) 119, 254
TspDTI ATGAA 5 cut(s) 63, 215, 216, 412, 461
TspGWI ACGGA 1 cut(s) 334
XapI RAATTY 2 cut(s) 436, 484
XbaI TCTAGA 1 cut(s) 523
XceI RCATGY 1 cut(s) 600
XmiI GTMKAC 1 cut(s) 142
XspI CTAG 3 cut(s) 236, 524, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.