RLG00000025877
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000402
Physical Location & Seq
Forward (+)
48880413 .. 48881532
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025877

Sequence Viewer

Length: 750 bp
ATGGGTGGTATTCCATGGACTAAGGAAGAGGATCAGTTGCTGAGGAAATGCATAGAGAAGTATGGAGAAGGCAAATGGCATCGAATTCCTCACTTAGCCGGTCTAAACAGGTGCCGTAAGAGCTGCAGGCTTCGGTGGCTAAACTACCTTCGGCCGAACATCAAGAGAGGGAGCTTTGAACAAGAGGAAGTTGAGCTCATCATCAAGCTCCAAAGGCTCTTGGGAAACAGGTGGTCATTAGTTGCAGCTAGGCTTCCGGGGAGGACTGGTAATGATGTGAAGAACTATTGGAATTGTCACTTGAGCAAAAAGCTAAATGCTCAAGAAATTCATGGTGATCATCAGAAGATTAATCATGCAAGGAATAATAATTTACAAGTCATAAAATCCCAAGCTTCAAAATACGCCAGCTCAAACTCAAAGGGGTCAATGATAAGTAGTACTCTTGAGGATCAAACTTGCCAAGCCTTGGAAGAATGTAGCAAAGCATCAGTGGCAATGCTCTGCAATATTGATAAAGATCAGGGGCAGATCAGTCAGATAGTTGAGAGAGAGGATAGCAACAATCTATGTGTGGAAGAAGAACATGAGGGGAACAATGACTTCATGGGTGATTTGGGAATGGTAGACCTTGAACAATTTGAACAAGTTATAGAGCAATATGATCAAGAGTTCAACAACAAAAACAAGAAATGGGAGTGGGATGACTCCATCTTGGACATGGACCTTTGGGTTACTGATTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

250

Amino Acids

28.88

Weight (kDa)

5.72

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 50 2.5e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 6 - 65 4.3e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 56 - 100 2.5e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 60 - 109 4.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 111
AccB7I CCANNNNNTGG 1 cut(s) 469
AccI GTMKAC 1 cut(s) 627
AclWI GGATC 2 cut(s) 39, 459
AcoI YGGCCR 1 cut(s) 152
AcsI RAATTY 2 cut(s) 84, 327
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 1 cut(s) 469
AgsI TTSAA 5 cut(s) 179, 399, 635, 644, 676
AluBI AGCT 8 cut(s) 123, 174, 196, 208, 248, 313, 395, 411
AluI AGCT 8 cut(s) 123, 174, 196, 208, 248, 313, 395, 411
Alw21I GWGCWC 1 cut(s) 198
AlwI GGATC 2 cut(s) 39, 459
AlwNI CAGNNNCTG 1 cut(s) 40
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 123, 245
ApoI RAATTY 2 cut(s) 84, 327
AseI ATTAAT 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 724
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 347, 623
AvaII GGWCC 1 cut(s) 724
BanI GGYRCC 1 cut(s) 111
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 198
BbvCI CCTCAGC 1 cut(s) 41
BbvI GCAGC 2 cut(s) 110, 257
BccI CCATC 1 cut(s) 719
BceAI ACGGC 1 cut(s) 99
BclI TGATCA 2 cut(s) 337, 664
BcnI CCSGG 1 cut(s) 258
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 124
BisI GCNGC 2 cut(s) 124, 246
BlsI GCNGC 2 cut(s) 125, 247
BmcAI AGTACT 1 cut(s) 442
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 1 cut(s) 724
BmgT120I GGNCC 1 cut(s) 724
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 2 cut(s) 88, 497
Bpu10I CCTNAGC 1 cut(s) 41
BpuEI CTTGAG 3 cut(s) 306, 322, 467
BpuMI CCSGG 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 519
BsaJI CCNNGG 3 cut(s) 14, 257, 468
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 504
Bse8I GATNNNNATC 1 cut(s) 519
BseDI CCNNGG 3 cut(s) 14, 257, 468
BseGI GGATG 1 cut(s) 709
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 271
BseX3I CGGCCG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 110, 257
Bsh1285I CGRYCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 111
BsiEI CGRYCG 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 2 cut(s) 99, 257
BslI CCNNNNNNNGG 1 cut(s) 469
BsnI GGCC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 6 cut(s) 31, 337, 451, 520, 531, 664
Bsp19I CCATGG 1 cut(s) 14
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 113
BspMAI CTGCAG 1 cut(s) 128
BspPI GGATC 2 cut(s) 39, 459
BspT107I GGYRCC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 504
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 14, 257, 468
BssMI GATC 6 cut(s) 31, 337, 451, 520, 531, 664
BssT1I CCWWGG 2 cut(s) 14, 468
Bst6I CTCTTC 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 128, 409
BstDEI CTNAG 3 cut(s) 21, 41, 94
BstDSI CCRYGG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 709
BstKTI GATC 6 cut(s) 34, 340, 454, 523, 534, 667
BstMBI GATC 6 cut(s) 31, 337, 451, 520, 531, 664
BstMCI CGRYCG 1 cut(s) 155
BstMWI GCNNNNNNNGC 4 cut(s) 120, 136, 214, 494
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 110, 257
BstZI CGGCCG 1 cut(s) 152
BsuRI GGCC 1 cut(s) 154
BtgI CCRYGG 1 cut(s) 14
BtsCI GGATG 1 cut(s) 709
BtsIMutI CAGTG 1 cut(s) 498
Cac8I GCNNGC 2 cut(s) 128, 409
CaiI CAGNNNCTG 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 724
Csp6I GTAC 1 cut(s) 441
CviAII CATG 6 cut(s) 15, 332, 356, 587, 607, 721
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 3 cut(s) 21, 41, 94
DpnI GATC 6 cut(s) 33, 339, 453, 522, 533, 666
DpnII GATC 6 cut(s) 31, 337, 451, 520, 531, 664
EaeI YGGCCR 1 cut(s) 152
EagI CGGCCG 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 196
EclXI CGGCCG 1 cut(s) 152
Eco130I CCWWGG 2 cut(s) 14, 468
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 724
Eco52I CGGCCG 1 cut(s) 152
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 84
EcoT14I CCWWGG 2 cut(s) 14, 468
EcoT22I ATGCAT 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 2 cut(s) 14, 468
FaeI CATG 6 cut(s) 18, 335, 359, 590, 610, 724
FatI CATG 6 cut(s) 14, 331, 355, 586, 606, 720
FbaI TGATCA 2 cut(s) 337, 664
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 2 cut(s) 124, 246
FokI GGATG 1 cut(s) 716
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 124, 246
FspBI CTAG 1 cut(s) 249
GluI GCNGC 2 cut(s) 124, 246
HaeIII GGCC 1 cut(s) 154
HapII CCGG 2 cut(s) 99, 257
Hin1II CATG 6 cut(s) 18, 335, 359, 590, 610, 724
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 2 cut(s) 707, 740
HpaII CCGG 2 cut(s) 99, 257
HphI GGTGA 2 cut(s) 347, 623
Hpy166II GTNNAC 1 cut(s) 628
Hpy188I TCNGA 2 cut(s) 345, 540
Hpy188III TCNNGA 4 cut(s) 163, 323, 446, 668
Hpy8I GTNNAC 1 cut(s) 628
HpyAV CCTTC 2 cut(s) 62, 158
HpyCH4V TGCA 5 cut(s) 51, 126, 245, 359, 507
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 136, 214, 494
HpyF3I CTNAG 3 cut(s) 21, 41, 94
Hsp92II CATG 6 cut(s) 18, 335, 359, 590, 610, 724
Ksp22I TGATCA 2 cut(s) 337, 664
Kzo9I GATC 6 cut(s) 31, 337, 451, 520, 531, 664
LmnI GCTCC 2 cut(s) 171, 213
LpnPI CCDG 8 cut(s) 94, 112, 112, 214, 252, 270, 421, 509
Lsp1109I GCAGC 2 cut(s) 110, 257
LweI GCATC 2 cut(s) 88, 497
MaeI CTAG 1 cut(s) 249
MaeIII GTNAC 2 cut(s) 296, 733
MalI GATC 6 cut(s) 33, 339, 453, 522, 533, 666
MboI GATC 6 cut(s) 31, 337, 451, 520, 531, 664
MboII GAAGA 7 cut(s) 38, 292, 358, 485, 590, 593, 735
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 5 cut(s) 84, 292, 327, 370, 638
MlyI GAGTC 1 cut(s) 701
MnlI CCTC 9 cut(s) 22, 36, 99, 161, 178, 255, 442, 547, 583
Mph1103I ATGCAT 1 cut(s) 53
MseI TTAA 1 cut(s) 351
MspI CCGG 2 cut(s) 99, 257
MspR9I CCNGG 1 cut(s) 258
MwoI GCNNNNNNNGC 4 cut(s) 120, 136, 214, 494
NciI CCSGG 1 cut(s) 258
NcoI CCATGG 1 cut(s) 14
NdeII GATC 6 cut(s) 31, 337, 451, 520, 531, 664
NlaIII CATG 6 cut(s) 18, 335, 359, 590, 610, 724
NlaIV GGNNCC 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 296
NsiI ATGCAT 1 cut(s) 53
PfeI GAWTC 1 cut(s) 740
PflMI CCANNNNNTGG 1 cut(s) 469
PkrI GCNGC 2 cut(s) 125, 247
PleI GAGTC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 701
PshBI ATTAAT 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 724
PstI CTGCAG 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 40
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 2 cut(s) 124, 246
Sau3AI GATC 6 cut(s) 31, 337, 451, 520, 531, 664
Sau96I GGNCC 1 cut(s) 724
ScaI AGTACT 1 cut(s) 442
SchI GAGTC 1 cut(s) 701
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 2 cut(s) 88, 497
SfcI CTRYAG 1 cut(s) 124
SinI GGWCC 1 cut(s) 724
SmlI CTYRAG 3 cut(s) 301, 321, 446
SmoI CTYRAG 3 cut(s) 301, 321, 446
Sse9I AATT 5 cut(s) 84, 292, 327, 370, 638
SspI AATATT 1 cut(s) 511
SspMI CTAG 1 cut(s) 249
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 2 cut(s) 14, 468
TaqI TCGA 1 cut(s) 82
TasI AATT 5 cut(s) 84, 292, 327, 370, 638
TatI WGTACW 1 cut(s) 440
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 498
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 2 cut(s) 123, 245
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 3 cut(s) 320, 595, 735
TspRI CASTG 1 cut(s) 498
Van91I CCANNNNNTGG 1 cut(s) 469
VpaK11BI GGWCC 1 cut(s) 724
VspI ATTAAT 1 cut(s) 351
XapI RAATTY 2 cut(s) 84, 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 718
XmiI GTMKAC 1 cut(s) 627
XspI CTAG 1 cut(s) 249
ZrmI AGTACT 1 cut(s) 442
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.