Rw2G020310
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000402
Physical Location & Seq
Reverse (-)
27604139 .. 27606354
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G020310.1

Sequence Viewer

Length: 711 bp
ATGGAGCCGGGTTTCGGCGTGAGAAAAGGTGCATGGACTAAAGAGGAAGATGAACTTCTGAGACAGGTCATCGAAAAGCATGGAGAAGGAAAATGGCATCAGGTTCCTTTCAAAGCAGGCTTAAACAGATGCAGGAAGAGCTGTAGGCTGAGGTGGCTAAATTATTTGAAGCCAAATATCAAGAGAGGAGAGTTTACAGTTGATGAAGTTGATATGATCATCAGACTTCATAAGCTTCTAGGAAACAGGTGGTCCTTAATTGCTGGAAGGCTACCGGGAAGAACAGCCAACGATGTAAAGAACTATTGGAATACTTATCAACGGAAAAAGAATCAAAAGATGACTTCAGGCGCAAAAAAAAAGAAAGATAAATCCCAAAAAAACACAATCACCCCTTTGGTTGTAAGACCTCGACCACGAACCTTCATCAAAAGGTTGAATTTTCTGGAAAGAGATGCCAATTTAGAGCATATTCATTCAGAAGAGAATTCTTCCACTTCTTTACCAACACCACCACCACAAACTCTAGAATTAGAGAATGTAATTGATTGGTGGAAAGTTGTATCTGAAGACAGTACAGGAAGCATTGATAGAACAATATGTTCTAGTCTTGGTTTAGAGGACGACTTCTTCACAAACTTCTGGGTTGAAGATATGGTACAATTGTCAACTATAGATGGCCATGATCTAGTCAACAACTTCTACGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

236

Amino Acids

27.51

Weight (kDa)

9.38

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 9 - 56 2.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 12 - 70 8.8e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 62 - 106 3.8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 65 - 108 4.7e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 679
AcsI RAATTY 2 cut(s) 439, 487
AcuI CTGAAG 2 cut(s) 330, 588
AfaI GTAC 2 cut(s) 577, 660
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 4 cut(s) 112, 169, 439, 650
AluBI AGCT 2 cut(s) 141, 235
AluI AGCT 2 cut(s) 141, 235
Alw26I GTCTC 1 cut(s) 55
AoxI GGCC 1 cut(s) 679
ApoI RAATTY 2 cut(s) 439, 487
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 252
AsuC2I CCSGG 2 cut(s) 9, 276
AsuHPI GGTGA 1 cut(s) 382
AvaII GGWCC 1 cut(s) 252
BaeI ACNNNNGTAYC 2 cut(s) 650, 683
BalI TGGCCA 1 cut(s) 681
BarI GAAGNNNNNNTAC 2 cut(s) 642, 674
BbsI GAAGAC 1 cut(s) 576
BbvCI CCTCAGC 1 cut(s) 149
BccI CCATC 1 cut(s) 671
BclI TGATCA 1 cut(s) 216
BcnI CCSGG 2 cut(s) 9, 276
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 4 cut(s) 239, 527, 606, 689
BfmI CTRYAG 2 cut(s) 142, 672
Bme1390I CCNGG 2 cut(s) 9, 276
Bme18I GGWCC 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 2 cut(s) 6, 105
BmrFI CCNGG 2 cut(s) 9, 276
BmsI GCATC 3 cut(s) 106, 119, 445
BpiI GAAGAC 1 cut(s) 576
Bpu10I CCTNAGC 1 cut(s) 149
BpuMI CCSGG 2 cut(s) 9, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 2 cut(s) 50, 140
BseRI GAGGAG 1 cut(s) 201
BshFI GGCC 1 cut(s) 681
BsiSI CCGG 2 cut(s) 8, 275
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 55
BsnI GGCC 1 cut(s) 681
Bsp143I GATC 2 cut(s) 216, 685
BspANI GGCC 1 cut(s) 681
BspCNI CTCAG 2 cut(s) 51, 141
BspLI GGNNCC 2 cut(s) 6, 105
BspQI GCTCTTC 1 cut(s) 131
BssMI GATC 2 cut(s) 216, 685
Bst4CI ACNGT 2 cut(s) 199, 575
Bst6I CTCTTC 2 cut(s) 131, 477
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 59, 149
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 2 cut(s) 219, 688
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 2 cut(s) 216, 685
BstMWI GCNNNNNNNGC 2 cut(s) 138, 154
BstSCI CCNGG 2 cut(s) 7, 274
BstSFI CTRYAG 2 cut(s) 142, 672
BstV2I GAAGAC 1 cut(s) 576
BsuRI GGCC 1 cut(s) 681
Cac8I GCNNGC 1 cut(s) 118
CfoI GCGC 1 cut(s) 353
Cfr13I GGNCC 1 cut(s) 252
Csp6I GTAC 2 cut(s) 576, 659
CviAII CATG 4 cut(s) 33, 80, 683, 708
CviQI GTAC 2 cut(s) 576, 659
DdeI CTNAG 2 cut(s) 59, 149
DpnI GATC 2 cut(s) 218, 687
DpnII GATC 2 cut(s) 216, 685
EaeI YGGCCR 1 cut(s) 679
Eam1104I CTCTTC 2 cut(s) 131, 477
EarI CTCTTC 2 cut(s) 131, 477
Eco47I GGWCC 1 cut(s) 252
Eco57I CTGAAG 2 cut(s) 330, 588
EcoRI GAATTC 1 cut(s) 487
FaeI CATG 4 cut(s) 36, 83, 686, 711
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 4 cut(s) 32, 79, 682, 707
FbaI TGATCA 1 cut(s) 216
FspBI CTAG 4 cut(s) 239, 527, 606, 689
GlaI GCGC 1 cut(s) 352
HaeIII GGCC 1 cut(s) 681
HapII CCGG 2 cut(s) 8, 275
HhaI GCGC 1 cut(s) 353
Hin1II CATG 4 cut(s) 36, 83, 686, 711
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HincII GTYRAC 2 cut(s) 669, 694
HindII GTYRAC 2 cut(s) 669, 694
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 1 cut(s) 331
HpaII CCGG 2 cut(s) 8, 275
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 3 cut(s) 195, 669, 694
Hpy188I TCNGA 4 cut(s) 60, 224, 481, 568
Hpy188III TCNNGA 3 cut(s) 181, 446, 527
Hpy8I GTNNAC 3 cut(s) 195, 669, 694
HpyAV CCTTC 3 cut(s) 80, 261, 433
HpyCH4III ACNGT 2 cut(s) 199, 575
HpyCH4V TGCA 2 cut(s) 32, 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 154
HpyF3I CTNAG 2 cut(s) 59, 149
Hsp92II CATG 4 cut(s) 36, 83, 686, 711
HspAI GCGC 1 cut(s) 351
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 2 cut(s) 216, 685
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 4
LweI GCATC 3 cut(s) 106, 119, 445
MaeI CTAG 4 cut(s) 239, 527, 606, 689
MalI GATC 2 cut(s) 218, 687
MboI GATC 2 cut(s) 216, 685
MboII GAAGA 8 cut(s) 59, 148, 291, 483, 494, 581, 622, 662
MfeI CAATTG 1 cut(s) 662
MlsI TGGCCA 1 cut(s) 681
MluCI AATT 8 cut(s) 160, 258, 439, 460, 487, 530, 543, 662
MluNI TGGCCA 1 cut(s) 681
MnlI CCTC 5 cut(s) 37, 144, 179, 420, 613
Mox20I TGGCCA 1 cut(s) 681
MscI TGGCCA 1 cut(s) 681
MseI TTAA 2 cut(s) 122, 257
Msp20I TGGCCA 1 cut(s) 681
MspI CCGG 2 cut(s) 8, 275
MspR9I CCNGG 2 cut(s) 9, 276
MunI CAATTG 1 cut(s) 662
MwoI GCNNNNNNNGC 2 cut(s) 138, 154
NciI CCSGG 2 cut(s) 9, 276
NdeII GATC 2 cut(s) 216, 685
NlaIII CATG 4 cut(s) 36, 83, 686, 711
NlaIV GGNNCC 2 cut(s) 6, 105
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 6, 105
PspPI GGNCC 1 cut(s) 252
RsaI GTAC 2 cut(s) 577, 660
RsaNI GTAC 2 cut(s) 576, 659
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 122, 257
Sau3AI GATC 2 cut(s) 216, 685
Sau96I GGNCC 1 cut(s) 252
ScrFI CCNGG 2 cut(s) 9, 276
SfaNI GCATC 3 cut(s) 106, 119, 445
SfcI CTRYAG 2 cut(s) 142, 672
SinI GGWCC 1 cut(s) 252
Sse9I AATT 8 cut(s) 160, 258, 439, 460, 487, 530, 543, 662
SspMI CTAG 4 cut(s) 239, 527, 606, 689
StyD4I CCNGG 2 cut(s) 7, 274
TaaI ACNGT 2 cut(s) 199, 575
TaqI TCGA 2 cut(s) 72, 412
TasI AATT 8 cut(s) 160, 258, 439, 460, 487, 530, 543, 662
TatI WGTACW 1 cut(s) 575
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 2 cut(s) 122, 257
Tru9I TTAA 2 cut(s) 122, 257
TspDTI ATGAA 5 cut(s) 66, 218, 219, 415, 464
TspGWI ACGGA 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 252
XapI RAATTY 2 cut(s) 439, 487
XbaI TCTAGA 1 cut(s) 526
XspI CTAG 4 cut(s) 239, 527, 606, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.