Rorug02G0202600
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000402
Physical Location & Seq
Reverse (-)
18975922 .. 18981500
5579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0202600.1

Sequence Viewer

Length: 1266 bp
ATGGAGAGCAGCAGCGCCGTCCTAGCCGGTCTTCAGCCAAATTACCTTCTTTGCCCCTCCCGCAATCCTTCTTCTTCCTCCACTTTCCTCCGCCCCTTCTCCGCCCACCATTCCTCTCATTCTCCCTCTCTCAAGCTCCAAAAGCAGCTCCCTTTGGCTTGTTACCAAGCCGTTCCTCCCTCCCCTATTCGCCGAAGTGCCACATTGTCTGATACTCTCCGCACTGAAACAAGTGAATTAGCCGACATAGAATGGGAGAATCTTGGCTTTGGGTTCGTTCCTACCGATTATATGTATCTCATGAAATGTGCTCAAGGCGGAAGCTTTTCAGATGGTGAATTGCAGCGTTTTGGGAACATTGAGTTGAACCCTTCAGCTGGAGTCTTGAATTATGGCCAGGGTTTGTTTGAAGGTATGAAAGCCTACAGGAAACAAGATGGTAATATACTCTTGTTTCGTCCTGAGGAAAATGCATCGCGGATGAGGTTGGGTGCTGAGCGGATGTGCATGCCCTCACCGACTGTTGATCAATTTGTGGAAGCTGTGAAGGCCACTGTGTTAGCAAATAAACGTTGGGTTCCCCCTCCAGGCAAAGGTTCTCTATATATCAGGCCATTGCTAATGGGAAGTGGTGCCGTTCTTGGTCTCGCGCCTGCCCCTGAATACACATTTCTGATCTATGTTTCGCCAGTTGGAAACTATTTTAAGGAAGGTGTTGCACCTATAAACTTGATTGTTGAGCATGAATTGCATCGTGCAACTCCTGGTGGTACTGGTGGTGTTAAAACTATAGGGAATTATGCCGCGGTTCTGAAGGCACAGTCAGCTGCAAAAGCAAAAGGCTACTCTGATGTTCTGTACCTTGACTGTGTTCACAAAAAATATCTAGAGGAGGTTTCCTCATGCAACATATTTGTTGTGAAGGGTGATGTTATCTCTACCCCAGCAATAAAAGGCACAATCTTACCAGGCATTACTCGAAAGAGTATTATTGATGTTGCTCGTAACCAAGGATTCCAGGTTGAGGAGCGCGCTGTGGATGTAGATGAATTACTTGAAGCTGATGAAGTCTTTTGTACGGGAACAGCTGTGGTCGTGTCACCTGTGGGCAGCATTACTTATCAGGATAAAAGGGTGTCGTATGGAGAGAGTGGCTTTGGTGCTGTGTCACAGAAGCTCTATTCTGTGCTTACCAGATTACAGATGGGTCTTATAGAGGACAAGATGGATTGGACTGTCGAGCTAAACCCAGCAAAAGCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

421

Amino Acids

45.79

Weight (kDa)

6.62

Isoelectric Point (pI)

56.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 134 - 372 8.9e-38 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 632
AccBSI CCGCTC 1 cut(s) 499
AccII CGCG 4 cut(s) 478, 650, 806, 1032
AciI CCGC 9 cut(s) 61, 91, 102, 220, 318, 478, 499, 804, 806
AclI AACGTT 1 cut(s) 571
AcoI YGGCCR 1 cut(s) 394
AcuI CTGAAG 3 cut(s) 17, 357, 833
AfaI GTAC 3 cut(s) 772, 860, 1078
AfiI CCNNNNNNNGG 4 cut(s) 377, 587, 593, 1024
AgsI TTSAA 4 cut(s) 367, 388, 410, 1058
AjnI CCWGG 5 cut(s) 396, 586, 763, 967, 1017
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 650
AoxI GGCC 3 cut(s) 394, 549, 611
ApeKI GCWGC 6 cut(s) 9, 12, 145, 343, 827, 1110
Asp700I GAANNNNTTC 1 cut(s) 325
AspLEI GCGC 4 cut(s) 17, 652, 1032, 1034
AsuHPI GGTGA 4 cut(s) 347, 507, 938, 1092
AxyI CCTNAGG 1 cut(s) 462
BalI TGGCCA 1 cut(s) 396
BanI GGYRCC 1 cut(s) 632
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 6 cut(s) 21, 24, 157, 355, 814, 1122
BccI CCATC 4 cut(s) 326, 431, 1198, 1219
BceAI ACGGC 3 cut(s) 2, 155, 620
BciT130I CCWGG 5 cut(s) 398, 588, 765, 969, 1019
BclI TGATCA 1 cut(s) 526
BcoDI GTCTC 1 cut(s) 650
BfaI CTAG 2 cut(s) 23, 887
BfmI CTRYAG 2 cut(s) 424, 789
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 7 cut(s) 10, 13, 146, 344, 804, 828, 1111
BlpI GCTNAGC 1 cut(s) 495
BlsI GCNGC 7 cut(s) 11, 14, 147, 345, 805, 829, 1112
Bme1390I CCNGG 5 cut(s) 398, 588, 765, 969, 1019
BmiI GGNNCC 2 cut(s) 579, 634
BmrFI CCNGG 5 cut(s) 398, 588, 765, 969, 1019
BmsI GCATC 2 cut(s) 482, 760
BpiI GAAGAC 1 cut(s) 23
BplI GAGNNNNNCTC 2 cut(s) 884, 916
BpmI CTGGAG 2 cut(s) 399, 570
Bpu1102I GCTNAGC 1 cut(s) 495
BpuEI CTTGAG 2 cut(s) 116, 297
BsaI GGTCTC 1 cut(s) 650
BsaJI CCNNGG 3 cut(s) 397, 804, 1009
Bsc4I CCNNNNNNNGG 4 cut(s) 377, 587, 593, 1024
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 689, 778
Bse21I CCTNAGG 1 cut(s) 462
Bse3DI GCAATG 1 cut(s) 614
BseBI CCWGG 5 cut(s) 398, 588, 765, 969, 1019
BseDI CCNNGG 3 cut(s) 397, 804, 1009
BseGI GGATG 3 cut(s) 486, 507, 1045
BseLI CCNNNNNNNGG 4 cut(s) 377, 587, 593, 1024
BseMI GCAATG 1 cut(s) 614
BseMII CTCAG 2 cut(s) 453, 486
BseNI ACTGG 2 cut(s) 689, 778
BsePI GCGCGC 1 cut(s) 1030
BseRI GAGGAG 2 cut(s) 905, 1040
BseXI GCAGC 6 cut(s) 21, 24, 157, 355, 814, 1122
BseYI CCCAGC 2 cut(s) 943, 1249
Bsh1236I CGCG 4 cut(s) 478, 650, 806, 1032
BshFI GGCC 3 cut(s) 396, 551, 613
BshNI GGYRCC 1 cut(s) 632
BsiHKAI GWGCWC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 27
BslI CCNNNNNNNGG 4 cut(s) 377, 587, 593, 1024
BsmAI GTCTC 1 cut(s) 650
BsnI GGCC 3 cut(s) 396, 551, 613
Bso31I GGTCTC 1 cut(s) 650
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 526, 675
Bsp1720I GCTNAGC 1 cut(s) 495
BspACI CCGC 9 cut(s) 61, 91, 102, 220, 318, 478, 499, 804, 806
BspANI GGCC 3 cut(s) 396, 551, 613
BspCNI CTCAG 2 cut(s) 454, 487
BspFNI CGCG 4 cut(s) 478, 650, 806, 1032
BspHI TCATGA 1 cut(s) 300
BspLI GGNNCC 2 cut(s) 579, 634
BspT107I GGYRCC 1 cut(s) 632
BspTNI GGTCTC 1 cut(s) 650
BsrBI CCGCTC 1 cut(s) 499
BsrDI GCAATG 1 cut(s) 614
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 2 cut(s) 689, 778
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 3 cut(s) 397, 804, 1009
BssHII GCGCGC 1 cut(s) 1030
BssMI GATC 2 cut(s) 526, 675
BssT1I CCWWGG 1 cut(s) 1009
Bst2UI CCWGG 5 cut(s) 398, 588, 765, 969, 1019
Bst4CI ACNGT 5 cut(s) 523, 556, 822, 869, 1237
BstAPI GCANNNNNTGC 1 cut(s) 748
BstC8I GCNNGC 3 cut(s) 509, 654, 1032
BstDEI CTNAG 2 cut(s) 462, 495
BstDSI CCRYGG 1 cut(s) 804
BstF5I GGATG 3 cut(s) 486, 507, 1045
BstFNI CGCG 4 cut(s) 478, 650, 806, 1032
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 4 cut(s) 17, 652, 1032, 1034
BstKTI GATC 2 cut(s) 529, 678
BstMAI GTCTC 1 cut(s) 650
BstMBI GATC 2 cut(s) 526, 675
BstMWI GCNNNNNNNGC 7 cut(s) 23, 60, 142, 548, 748, 824, 833
BstNI CCWGG 5 cut(s) 398, 588, 765, 969, 1019
BstNSI RCATGY 1 cut(s) 511
BstSCI CCNGG 5 cut(s) 396, 586, 763, 967, 1017
BstSFI CTRYAG 2 cut(s) 424, 789
BstUI CGCG 4 cut(s) 478, 650, 806, 1032
BstV1I GCAGC 6 cut(s) 21, 24, 157, 355, 814, 1122
BstV2I GAAGAC 1 cut(s) 23
Bsu36I CCTNAGG 1 cut(s) 462
BsuRI GGCC 3 cut(s) 396, 551, 613
BtgI CCRYGG 1 cut(s) 804
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 3 cut(s) 486, 507, 1045
BtsIMutI CAGTG 2 cut(s) 222, 552
Cac8I GCNNGC 3 cut(s) 509, 654, 1032
CciI TCATGA 1 cut(s) 300
CfoI GCGC 4 cut(s) 17, 652, 1032, 1034
Cfr10I RCCGGY 1 cut(s) 26
Cfr42I CCGCGG 1 cut(s) 807
Csp6I GTAC 3 cut(s) 771, 859, 1077
CviAII CATG 4 cut(s) 301, 508, 743, 903
CviQI GTAC 3 cut(s) 771, 859, 1077
DdeI CTNAG 2 cut(s) 462, 495
DpnI GATC 2 cut(s) 528, 677
DpnII GATC 2 cut(s) 526, 675
EaeI YGGCCR 1 cut(s) 394
EciI GGCGGA 3 cut(s) 80, 91, 333
Eco130I CCWWGG 1 cut(s) 1009
Eco31I GGTCTC 1 cut(s) 650
Eco57I CTGAAG 3 cut(s) 17, 357, 833
Eco81I CCTNAGG 1 cut(s) 462
EcoRII CCWGG 5 cut(s) 396, 586, 763, 967, 1017
EcoT14I CCWWGG 1 cut(s) 1009
EcoT22I ATGCAT 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 1009
FaeI CATG 4 cut(s) 304, 511, 746, 906
FatI CATG 4 cut(s) 300, 507, 742, 902
FauI CCCGC 1 cut(s) 68
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 7 cut(s) 10, 13, 146, 344, 804, 828, 1111
FokI GGATG 3 cut(s) 493, 514, 1052
Fsp4HI GCNGC 7 cut(s) 10, 13, 146, 344, 804, 828, 1111
FspBI CTAG 2 cut(s) 23, 887
GlaI GCGC 4 cut(s) 16, 651, 1031, 1033
GluI GCNGC 7 cut(s) 10, 13, 146, 344, 804, 828, 1111
GsaI CCCAGC 2 cut(s) 947, 1253
GsuI CTGGAG 2 cut(s) 399, 570
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 3 cut(s) 396, 551, 613
HapII CCGG 1 cut(s) 27
HhaI GCGC 4 cut(s) 17, 652, 1032, 1034
Hin1II CATG 4 cut(s) 304, 511, 746, 906
Hin6I GCGC 4 cut(s) 15, 650, 1030, 1032
HinP1I GCGC 4 cut(s) 15, 650, 1030, 1032
HindIII AAGCTT 1 cut(s) 322
HinfI GANTC 3 cut(s) 259, 381, 1014
HpaII CCGG 1 cut(s) 27
HphI GGTGA 4 cut(s) 347, 507, 938, 1092
Hpy166II GTNNAC 1 cut(s) 874
Hpy188I TCNGA 5 cut(s) 211, 331, 675, 813, 850
Hpy188III TCNNGA 5 cut(s) 301, 385, 461, 887, 1124
Hpy8I GTNNAC 1 cut(s) 874
HpyAV CCTTC 9 cut(s) 56, 78, 106, 381, 404, 541, 704, 808, 916
HpyCH4III ACNGT 5 cut(s) 523, 556, 822, 869, 1237
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 8 cut(s) 343, 473, 507, 719, 751, 758, 830, 906
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 60, 142, 548, 748, 824, 833
HpyF3I CTNAG 2 cut(s) 462, 495
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 4 cut(s) 304, 511, 746, 906
HspAI GCGC 4 cut(s) 15, 650, 1030, 1032
Ksp22I TGATCA 1 cut(s) 526
KspI CCGCGG 1 cut(s) 807
Kzo9I GATC 2 cut(s) 526, 675
LmnI GCTCC 3 cut(s) 141, 153, 1027
Lsp1109I GCAGC 6 cut(s) 21, 24, 157, 355, 814, 1122
LweI GCATC 2 cut(s) 482, 760
MaeI CTAG 2 cut(s) 23, 887
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 4 cut(s) 161, 1004, 1098, 1167
MalI GATC 2 cut(s) 528, 677
MbiI CCGCTC 1 cut(s) 499
MboI GATC 2 cut(s) 526, 675
MboII GAAGA 3 cut(s) 23, 63, 66
MhlI GDGCHC 1 cut(s) 313
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 8 cut(s) 40, 236, 338, 388, 530, 746, 796, 1049
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 1 cut(s) 390
MmeI TCCRAC 1 cut(s) 673
Mox20I TGGCCA 1 cut(s) 396
Mph1103I ATGCAT 1 cut(s) 475
MroXI GAANNNNTTC 1 cut(s) 325
MscI TGGCCA 1 cut(s) 396
MseI TTAA 2 cut(s) 705, 783
Msp20I TGGCCA 1 cut(s) 396
MspA1I CMGCKG 4 cut(s) 377, 806, 827, 1088
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 5 cut(s) 398, 588, 765, 969, 1019
MvaI CCWGG 5 cut(s) 398, 588, 765, 969, 1019
MvnI CGCG 4 cut(s) 478, 650, 806, 1032
MwoI GCNNNNNNNGC 7 cut(s) 23, 60, 142, 548, 748, 824, 833
NdeII GATC 2 cut(s) 526, 675
NlaIII CATG 4 cut(s) 304, 511, 746, 906
NlaIV GGNNCC 2 cut(s) 579, 634
NmuCI GTSAC 2 cut(s) 1098, 1167
NsiI ATGCAT 1 cut(s) 475
NspI RCATGY 1 cut(s) 511
PaeI GCATGC 1 cut(s) 511
PagI TCATGA 1 cut(s) 300
PauI GCGCGC 1 cut(s) 1030
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 325
PfeI GAWTC 2 cut(s) 259, 1014
PkrI GCNGC 7 cut(s) 11, 14, 147, 345, 805, 829, 1112
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
Psp1406I AACGTT 1 cut(s) 571
Psp6I CCWGG 5 cut(s) 396, 586, 763, 967, 1017
PspFI CCCAGC 2 cut(s) 943, 1249
PspGI CCWGG 5 cut(s) 396, 586, 763, 967, 1017
PspN4I GGNNCC 2 cut(s) 579, 634
PteI GCGCGC 1 cut(s) 1030
PvuII CAGCTG 3 cut(s) 377, 827, 1088
RsaI GTAC 3 cut(s) 772, 860, 1078
RsaNI GTAC 3 cut(s) 771, 859, 1077
SacII CCGCGG 1 cut(s) 807
SaqAI TTAA 2 cut(s) 705, 783
SatI GCNGC 7 cut(s) 10, 13, 146, 344, 804, 828, 1111
Sau3AI GATC 2 cut(s) 526, 675
SchI GAGTC 1 cut(s) 390
ScrFI CCNGG 5 cut(s) 398, 588, 765, 969, 1019
SduI GDGCHC 1 cut(s) 313
SfaNI GCATC 2 cut(s) 482, 760
SfcI CTRYAG 2 cut(s) 424, 789
Sfr303I CCGCGG 1 cut(s) 807
SgrBI CCGCGG 1 cut(s) 807
SmlI CTYRAG 2 cut(s) 131, 312
SmoI CTYRAG 2 cut(s) 131, 312
SphI GCATGC 1 cut(s) 511
Sse9I AATT 8 cut(s) 40, 236, 338, 388, 530, 746, 796, 1049
SsiI CCGC 9 cut(s) 61, 91, 102, 220, 318, 478, 499, 804, 806
SspMI CTAG 2 cut(s) 23, 887
StyD4I CCNGG 5 cut(s) 396, 586, 763, 967, 1017
StyI CCWWGG 1 cut(s) 1009
TaaI ACNGT 5 cut(s) 523, 556, 822, 869, 1237
TaiI ACGT 1 cut(s) 574
TaqI TCGA 2 cut(s) 979, 1239
TasI AATT 8 cut(s) 40, 236, 338, 388, 530, 746, 796, 1049
TauI GCSGC 1 cut(s) 806
TfiI GAWTC 2 cut(s) 259, 1014
Tru1I TTAA 2 cut(s) 705, 783
Tru9I TTAA 2 cut(s) 705, 783
TscAI CASTG 2 cut(s) 229, 559
TseFI GTSAC 2 cut(s) 1098, 1167
TseI GCWGC 6 cut(s) 9, 12, 145, 343, 827, 1110
Tsp45I GTSAC 2 cut(s) 1098, 1167
TspDTI ATGAA 5 cut(s) 317, 431, 759, 1062, 1080
TspRI CASTG 2 cut(s) 229, 559
XbaI TCTAGA 1 cut(s) 886
XceI RCATGY 1 cut(s) 511
XcmI CCANNNNNNNNNTGG 1 cut(s) 1201
XmnI GAANNNNTTC 1 cut(s) 325
XspI CTAG 2 cut(s) 23, 887
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.