Rorug02G0203000
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000402
Physical Location & Seq
Forward (+)
19007860 .. 19008317
458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0203000.1

Sequence Viewer

Length: 261 bp
ATGCTTGATAAGCATTTTCATGTTAATTATTGCAAGAAGTGCTATGATTTTTCAATTTATCCAATTTCTAATGTTGATATGGCTTCTTCGGAATATGTTAGCAATGACTTCATACTTCCTCCAAATGCAAAGAGGCCTCCCGGGAAGCCTAGGCTCAAGAGGTTCAAGTTTAGAGGAGAGTGTGAAAAGAAGCTCATTCGTTGTGGCCGATGTGGCACAATGGGACAACATAACAAGAAGACCTGCACTGAACCTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

86

Amino Acids

10.01

Weight (kDa)

9.48

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 205
AgsI TTSAA 2 cut(s) 54, 166
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 2 cut(s) 134, 205
AspA2I CCTAGG 1 cut(s) 149
AsuC2I CCSGG 2 cut(s) 141, 142
AvaI CYCGRG 1 cut(s) 140
AvrII CCTAGG 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 245
BcnI CCSGG 2 cut(s) 141, 142
BfaI CTAG 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 251
BglI GCCNNNNNGGC 1 cut(s) 213
BlnI CCTAGG 1 cut(s) 149
Bme1390I CCNGG 2 cut(s) 141, 142
BmeT110I CYCGRG 1 cut(s) 140
BmrFI CCNGG 2 cut(s) 141, 142
BpiI GAAGAC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 2 cut(s) 141, 142
BsaJI CCNNGG 2 cut(s) 140, 149
Bse3DI GCAATG 1 cut(s) 109
BseDI CCNNGG 2 cut(s) 140, 149
BseMI GCAATG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 189
BsgI GTGCAG 1 cut(s) 229
BshFI GGCC 2 cut(s) 136, 207
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 2 cut(s) 136, 207
BsoBI CYCGRG 1 cut(s) 140
BspANI GGCC 2 cut(s) 136, 207
BspMI ACCTGC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 140, 149
BssT1I CCWWGG 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 39
BstMWI GCNNNNNNNGC 3 cut(s) 10, 39, 213
BstSCI CCNGG 2 cut(s) 139, 140
BstV2I GAAGAC 1 cut(s) 245
BsuRI GGCC 2 cut(s) 136, 207
BtsIMutI CAGTG 1 cut(s) 246
BveI ACCTGC 1 cut(s) 251
Cfr9I CCCGGG 1 cut(s) 140
CviAII CATG 1 cut(s) 20
CviJI RGCY 6 cut(s) 83, 136, 148, 154, 193, 207
CviKI_1 RGCY 6 cut(s) 83, 136, 148, 154, 193, 207
EaeI YGGCCR 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 149
Eco147I AGGCCT 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 1 cut(s) 23
FaiI YATR 6 cut(s) 21, 45, 80, 96, 113, 231
FaqI GGGAC 1 cut(s) 237
FatI CATG 1 cut(s) 19
FspBI CTAG 1 cut(s) 150
HaeIII GGCC 2 cut(s) 136, 207
HapII CCGG 1 cut(s) 141
Hin1II CATG 1 cut(s) 23
HpaII CCGG 1 cut(s) 141
Hpy188I TCNGA 2 cut(s) 91, 260
Hpy188III TCNNGA 1 cut(s) 157
HpyCH4V TGCA 3 cut(s) 33, 128, 246
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 39, 213
Hsp92II CATG 1 cut(s) 23
LpnPI CCDG 2 cut(s) 154, 256
MaeI CTAG 1 cut(s) 150
MboII GAAGA 2 cut(s) 78, 250
MluCI AATT 3 cut(s) 25, 54, 63
MnlI CCTC 5 cut(s) 126, 129, 147, 153, 167
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 18
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 2 cut(s) 141, 142
MwoI GCNNNNNNNGC 3 cut(s) 10, 39, 213
NciI CCSGG 2 cut(s) 141, 142
NlaIII CATG 1 cut(s) 23
PceI AGGCCT 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 1 cut(s) 24
ScrFI CCNGG 2 cut(s) 141, 142
SetI ASST 4 cut(s) 164, 195, 245, 256
SmaI CCCGGG 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 3 cut(s) 25, 54, 63
SseBI AGGCCT 1 cut(s) 136
SspMI CTAG 1 cut(s) 150
StuI AGGCCT 1 cut(s) 136
StyD4I CCNGG 2 cut(s) 139, 140
StyI CCWWGG 1 cut(s) 149
TasI AATT 3 cut(s) 25, 54, 63
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 8, 100
TspMI CCCGGG 1 cut(s) 140
TspRI CASTG 1 cut(s) 253
XmaI CCCGGG 1 cut(s) 140
XmaJI CCTAGG 1 cut(s) 149
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.