Rh2BG270700
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000402
Physical Location & Seq
Reverse (-)
29254078 .. 29254436
359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG270700.1

Sequence Viewer

Length: 236 bp
ATGGAGGTGAGAAAAGGTTCATGGACCAAAGAGGAAGATCATCTTCTCAGGAACTACATTGAGAAACATGGACAAGGAAGATGGCACAAGGTTCCTCTCCAAGCAGGCTTAAACCGATGCAGAAAGAGCTGTAGAATGAGGTGGTTGAATTATTTGAAGCCAAACATTAAGAAAGGAGACTTTGCAGAGGATGAAGTCGATCTAATGATTAGGCTTCGGAAGCTTTTGGGAAACAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

78

Amino Acids

9.4

Weight (kDa)

9.94

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 52 2.3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 8 - 66 4.1e-14 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 148, 157
AluBI AGCT 2 cut(s) 129, 223
AluI AGCT 2 cut(s) 129, 223
Alw26I GTCTC 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 24
BccI CCATC 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 1 cut(s) 107
BseGI GGATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 37, 199
BspCNI CTCAG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 93
BssMI GATC 2 cut(s) 37, 199
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 2 cut(s) 40, 202
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 2 cut(s) 37, 199
BstMWI GCNNNNNNNGC 2 cut(s) 126, 220
BstSFI CTRYAG 1 cut(s) 130
BtsCI GGATG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 24
CviAII CATG 2 cut(s) 21, 68
CviJI RGCY 5 cut(s) 108, 129, 160, 214, 223
CviKI_1 RGCY 5 cut(s) 108, 129, 160, 214, 223
DdeI CTNAG 1 cut(s) 47
DpnI GATC 2 cut(s) 39, 201
DpnII GATC 2 cut(s) 37, 199
Eco47I GGWCC 1 cut(s) 24
FaeI CATG 2 cut(s) 24, 71
FaiI YATR 2 cut(s) 22, 69
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 2 cut(s) 20, 67
FokI GGATG 1 cut(s) 203
Hin1II CATG 2 cut(s) 24, 71
HindIII AAGCTT 1 cut(s) 221
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 120, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 220
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 2 cut(s) 24, 71
Kzo9I GATC 2 cut(s) 37, 199
LpnPI CCDG 2 cut(s) 34, 90
LweI GCATC 1 cut(s) 107
MalI GATC 2 cut(s) 39, 201
MboI GATC 2 cut(s) 37, 199
MboII GAAGA 3 cut(s) 35, 47, 90
MluCI AATT 1 cut(s) 148
MnlI CCTC 4 cut(s) 25, 105, 132, 181
MroXI GAANNNNTTC 1 cut(s) 16
MseI TTAA 2 cut(s) 110, 168
MwoI GCNNNNNNNGC 2 cut(s) 126, 220
NdeII GATC 2 cut(s) 37, 199
NlaIII CATG 2 cut(s) 24, 71
NlaIV GGNNCC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 110, 168
Sau3AI GATC 2 cut(s) 37, 199
Sau96I GGNCC 1 cut(s) 24
SetI ASST 6 cut(s) 9, 19, 93, 131, 143, 225
SfaNI GCATC 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 130
SgeI CNNG 7 cut(s) 33, 61, 80, 86, 100, 113, 117
SinI GGWCC 1 cut(s) 24
Sse9I AATT 1 cut(s) 148
TaqI TCGA 1 cut(s) 198
TasI AATT 1 cut(s) 148
Tru1I TTAA 2 cut(s) 110, 168
Tru9I TTAA 2 cut(s) 110, 168
TspDTI ATGAA 2 cut(s) 9, 207
VpaK11BI GGWCC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.