Prupe.3G163000_v2.0.a1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000402
Physical Location & Seq
Reverse (-)
18183274 .. 18185592
2319 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G163000.1

Sequence Viewer

Length: 684 bp
ATGGAGGGTTATGACTTGAGTGTGAGAAAAGGAGCTTGGACTAGAGAGGAAGATGATCTTCTGAGGCAGTGCATTGAGAATCAAGGTGAAGGAAAGTGGCACCAGGTTCCTTACAAAGCAGGGTTGAACAGGTGCAGGAAGAGCTGTAGACTAAGGTGGGTGAACTATTTGAAGCCAAATATCAAGAAAGGAGAGTTTGCAGAGGATGAAGTAGATCTAATAATTAGGCTTCACAAGCTTCTAGGAAACAGGTGGTCATTGATTGCTCGAAGACTTCCAGGCAGGACTGCGAATAATGTGAAAAATTACTGGAACACCCGATCGCGGACGGATTATTGCATGAAAAAGATAAAAGACAAATCCCAAGAAACAATAAAGACCATAATAAGGCCACAACCAAGAAGATTCACCAAAAGTTCAAATTGTTTGAGTTTTAAAGAACCAATTTTGGACCATACTCAACGTGATTGGTGGGAGACCTTTTTAGATGACAAGGATGCTACTGAAAGAGCTACAGGTTCTGGTCTTGGGTTAGATGAAGAACTGCTCGCAAGTTTTTGGGTTGATGATGATATGCCACAATCGACAAGAAAATGCATCAATTTTTCTGAAGGACTAATTAGAGGTGATTTCTCTTTTAGCGTGGACCCTTGGAATCATTCAAATGAAGAATATAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

228

Amino Acids

26.85

Weight (kDa)

8.97

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 148
AccII CGCG 1 cut(s) 325
AciI CCGC 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 630
AfiI CCNNNNNNNGG 2 cut(s) 324, 387
AgsI TTSAA 4 cut(s) 127, 172, 420, 663
AjnI CCWGG 2 cut(s) 102, 277
AjuI GAANNNNNNNTTGG 2 cut(s) 19, 51
AluBI AGCT 4 cut(s) 35, 144, 238, 512
AluI AGCT 4 cut(s) 35, 144, 238, 512
Alw26I GTCTC 1 cut(s) 470
AlwNI CAGNNNCTG 1 cut(s) 521
AoxI GGCC 1 cut(s) 389
AspS9I GGNCC 2 cut(s) 451, 646
AsuHPI GGTGA 4 cut(s) 98, 172, 400, 638
AvaII GGWCC 2 cut(s) 451, 646
BanI GGYRCC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 277
BciT130I CCWGG 2 cut(s) 104, 279
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 2 cut(s) 42, 242
BfmI CTRYAG 2 cut(s) 145, 513
BglII AGATCT 1 cut(s) 214
Bme1390I CCNGG 2 cut(s) 104, 279
Bme18I GGWCC 2 cut(s) 451, 646
BmgT120I GGNCC 2 cut(s) 451, 646
BmiI GGNNCC 3 cut(s) 101, 108, 648
BmrFI CCNGG 2 cut(s) 104, 279
BmsI GCATC 2 cut(s) 487, 606
BpiI GAAGAC 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 650
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 387
Bse1I ACTGG 1 cut(s) 314
BseBI CCWGG 2 cut(s) 104, 279
BseDI CCNNGG 1 cut(s) 650
BseGI GGATG 2 cut(s) 211, 502
BseLI CCNNNNNNNGG 2 cut(s) 324, 387
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 314
BsgI GTGCAG 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 325
Bsh1285I CGRYCG 1 cut(s) 323
BshFI GGCC 1 cut(s) 391
BshNI GGYRCC 1 cut(s) 99
BsiEI CGRYCG 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 324, 387
BsmAI GTCTC 1 cut(s) 470
BsnI GGCC 1 cut(s) 391
Bso31I GGTCTC 1 cut(s) 470
Bsp143I GATC 3 cut(s) 55, 214, 320
BspACI CCGC 1 cut(s) 325
BspANI GGCC 1 cut(s) 391
BspCNI CTCAG 1 cut(s) 54
BspFNI CGCG 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 101, 108, 648
BspQI GCTCTTC 1 cut(s) 134
BspT107I GGYRCC 1 cut(s) 99
BspTNI GGTCTC 1 cut(s) 470
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 650
BssMI GATC 3 cut(s) 55, 214, 320
BssT1I CCWWGG 1 cut(s) 650
Bst2UI CCWGG 2 cut(s) 104, 279
Bst6I CTCTTC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 549
BstDEI CTNAG 2 cut(s) 62, 152
BstF5I GGATG 2 cut(s) 211, 502
BstFNI CGCG 1 cut(s) 325
BstKTI GATC 3 cut(s) 58, 217, 323
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 3 cut(s) 55, 214, 320
BstMCI CGRYCG 1 cut(s) 323
BstMWI GCNNNNNNNGC 2 cut(s) 141, 235
BstNI CCWGG 2 cut(s) 104, 279
BstSCI CCNGG 2 cut(s) 102, 277
BstSFI CTRYAG 2 cut(s) 145, 513
BstUI CGCG 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 277
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 1 cut(s) 391
BtsCI GGATG 2 cut(s) 211, 502
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 549
CaiI CAGNNNCTG 1 cut(s) 521
Cfr13I GGNCC 2 cut(s) 451, 646
CsiI ACCWGGT 1 cut(s) 102
CviAII CATG 1 cut(s) 340
CviJI RGCY 7 cut(s) 35, 144, 175, 229, 238, 391, 512
CviKI_1 RGCY 7 cut(s) 35, 144, 175, 229, 238, 391, 512
DdeI CTNAG 2 cut(s) 62, 152
DpnI GATC 3 cut(s) 57, 216, 322
DpnII GATC 3 cut(s) 55, 214, 320
DraI TTTAAA 1 cut(s) 436
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 650
Eco31I GGTCTC 1 cut(s) 470
Eco47I GGWCC 2 cut(s) 451, 646
Eco57I CTGAAG 1 cut(s) 630
EcoRII CCWGG 2 cut(s) 102, 277
EcoT14I CCWWGG 1 cut(s) 650
EcoT22I ATGCAT 1 cut(s) 599
ErhI CCWWGG 1 cut(s) 650
FaeI CATG 1 cut(s) 343
FaiI YATR 6 cut(s) 12, 341, 383, 456, 575, 675
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FatI CATG 1 cut(s) 339
FblI GTMKAC 1 cut(s) 148
FokI GGATG 2 cut(s) 218, 509
FspBI CTAG 2 cut(s) 42, 242
HaeIII GGCC 1 cut(s) 391
Hin1II CATG 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 3 cut(s) 79, 405, 655
HphI GGTGA 4 cut(s) 98, 172, 400, 638
Hpy166II GTNNAC 3 cut(s) 149, 163, 646
Hpy188I TCNGA 2 cut(s) 63, 610
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 3 cut(s) 149, 163, 646
HpyAV CCTTC 2 cut(s) 83, 605
HpyCH4IV ACGT 1 cut(s) 463
HpyCH4V TGCA 5 cut(s) 72, 135, 200, 339, 597
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 235
HpyF3I CTNAG 2 cut(s) 62, 152
HpySE526I ACGT 1 cut(s) 463
Hsp92II CATG 1 cut(s) 343
Kzo9I GATC 3 cut(s) 55, 214, 320
LguI GCTCTTC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 32
LweI GCATC 2 cut(s) 487, 606
MabI ACCWGGT 1 cut(s) 102
MaeI CTAG 2 cut(s) 42, 242
MaeII ACGT 1 cut(s) 463
MalI GATC 3 cut(s) 57, 216, 322
MboI GATC 3 cut(s) 55, 214, 320
MboII GAAGA 7 cut(s) 50, 62, 151, 282, 414, 551, 680
MflI RGATCY 1 cut(s) 214
MluCI AATT 6 cut(s) 222, 304, 421, 444, 601, 618
MnlI CCTC 4 cut(s) 40, 57, 196, 617
Mph1103I ATGCAT 1 cut(s) 599
MseI TTAA 1 cut(s) 435
MslI CAYNNNNRTG 1 cut(s) 663
MspR9I CCNGG 2 cut(s) 104, 279
MvaI CCWGG 2 cut(s) 104, 279
MvnI CGCG 1 cut(s) 325
MwoI GCNNNNNNNGC 2 cut(s) 141, 235
NdeII GATC 3 cut(s) 55, 214, 320
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 3 cut(s) 101, 108, 648
NsiI ATGCAT 1 cut(s) 599
PciSI GCTCTTC 1 cut(s) 134
PfeI GAWTC 3 cut(s) 79, 405, 655
Ple19I CGATCG 1 cut(s) 323
Psp6I CCWGG 2 cut(s) 102, 277
PspGI CCWGG 2 cut(s) 102, 277
PspN4I GGNNCC 3 cut(s) 101, 108, 648
PspPI GGNCC 2 cut(s) 451, 646
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 1 cut(s) 214
PvuI CGATCG 1 cut(s) 323
RseI CAYNNNNRTG 1 cut(s) 663
SapI GCTCTTC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 435
Sau3AI GATC 3 cut(s) 55, 214, 320
Sau96I GGNCC 2 cut(s) 451, 646
ScrFI CCNGG 2 cut(s) 104, 279
SexAI ACCWGGT 1 cut(s) 102
SfaNI GCATC 2 cut(s) 487, 606
SfcI CTRYAG 2 cut(s) 145, 513
SinI GGWCC 2 cut(s) 451, 646
SmiMI CAYNNNNRTG 1 cut(s) 663
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 6 cut(s) 222, 304, 421, 444, 601, 618
SsiI CCGC 1 cut(s) 325
SspMI CTAG 2 cut(s) 42, 242
StyD4I CCNGG 2 cut(s) 102, 277
StyI CCWWGG 1 cut(s) 650
TaiI ACGT 1 cut(s) 466
TaqI TCGA 2 cut(s) 268, 584
TasI AATT 6 cut(s) 222, 304, 421, 444, 601, 618
TfiI GAWTC 3 cut(s) 79, 405, 655
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 1 cut(s) 74
TspDTI ATGAA 4 cut(s) 222, 356, 552, 681
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 1 cut(s) 74
VpaK11BI GGWCC 2 cut(s) 451, 646
XmiI GTMKAC 1 cut(s) 148
XspI CTAG 2 cut(s) 42, 242
Zsp2I ATGCAT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.