MD17G1261100.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000402
Physical Location & Seq
Forward (+)
32191281 .. 32197709
6429 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1261100.v1.1.491

Sequence Viewer

Length: 270 bp
ATGGAGGGATGTAACGTTAACTTGAGTGTGATGAGAAAAGGTGCCTGGACTCGAGAGGAAGATGATCTTCTCAGGCAGTGCATTGAGATTCATGGAGAAGGAAAGTGGCGCCAACTTCCTAACAAAGCAGGCTTAAACACGTGCAGGAAGAGCTGCAGATTAAGATGGTTGAACTATCTAAAGCCAAATATCAAGAGAGGGGACTTCACAGAGGATGAAGTAGATCTTACGATTAGGCTTCACAAGCTTTTAGGAAACAGTGGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

90

Amino Acids

10.35

Weight (kDa)

9.07

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 60 2.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 74 2.1e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 41, 108
AclI AACGTT 1 cut(s) 15
AcvI CACGTG 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 109
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 44
AluBI AGCT 2 cut(s) 153, 247
AluI AGCT 2 cut(s) 153, 247
Ama87I CYCGRG 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 153
AspLEI GCGC 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 51
BanI GGYRCC 2 cut(s) 41, 108
BbrPI CACGTG 1 cut(s) 141
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 46
BfmI CTRYAG 1 cut(s) 154
BfoI RGCGCY 1 cut(s) 112
BglII AGATCT 1 cut(s) 223
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 43, 110
BmrFI CCNGG 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 109
BseBI CCWGG 1 cut(s) 46
BseGI GGATG 2 cut(s) 14, 220
BseMII CTCAG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 163
BshNI GGYRCC 2 cut(s) 41, 108
BsiHKCI CYCGRG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 51
Bsp143I GATC 2 cut(s) 64, 223
BspCNI CTCAG 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 43, 110
BspMAI CTGCAG 1 cut(s) 158
BspQI GCTCTTC 1 cut(s) 143
BspT107I GGYRCC 2 cut(s) 41, 108
BssMI GATC 2 cut(s) 64, 223
BssNI GRCGYC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 109
BstBAI YACGTR 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 14, 220
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 2 cut(s) 67, 226
BstMBI GATC 2 cut(s) 64, 223
BstMWI GCNNNNNNNGC 2 cut(s) 150, 244
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BtsCI GGATG 2 cut(s) 14, 220
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 83, 265
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 111
CviAII CATG 1 cut(s) 92
CviJI RGCY 5 cut(s) 132, 153, 184, 238, 247
CviKI_1 RGCY 5 cut(s) 132, 153, 184, 238, 247
DdeI CTNAG 1 cut(s) 71
DinI GGCGCC 1 cut(s) 110
DpnI GATC 2 cut(s) 66, 225
DpnII GATC 2 cut(s) 64, 223
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco72I CACGTG 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 44
EgeI GGCGCC 1 cut(s) 110
EheI GGCGCC 1 cut(s) 110
FaeI CATG 1 cut(s) 95
FaiI YATR 1 cut(s) 93
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 210, 242
FaqI GGGAC 1 cut(s) 215
FatI CATG 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 2 cut(s) 21, 227
Fsp4HI GCNGC 1 cut(s) 154
GlaI GCGC 1 cut(s) 110
GluI GCNGC 1 cut(s) 154
HaeII RGCGCY 1 cut(s) 112
HhaI GCGC 1 cut(s) 111
Hin1I GRCGYC 1 cut(s) 109
Hin1II CATG 1 cut(s) 95
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 2 cut(s) 49, 88
HpaI GTTAAC 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 53, 193
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 2 cut(s) 15, 140
HpyCH4V TGCA 3 cut(s) 81, 144, 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 244
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 2 cut(s) 15, 140
Hsp92I GRCGYC 1 cut(s) 109
Hsp92II CATG 1 cut(s) 95
HspAI GCGC 1 cut(s) 109
KasI GGCGCC 1 cut(s) 108
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 2 cut(s) 64, 223
LguI GCTCTTC 1 cut(s) 143
LpnPI CCDG 5 cut(s) 31, 58, 58, 114, 130
Lsp1109I GCAGC 1 cut(s) 140
MaeII ACGT 2 cut(s) 15, 140
MaeIII GTNAC 1 cut(s) 11
MalI GATC 2 cut(s) 66, 225
MboI GATC 2 cut(s) 64, 223
MboII GAAGA 3 cut(s) 59, 71, 160
MflI RGATCY 1 cut(s) 223
Mly113I GGCGCC 1 cut(s) 109
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 3 cut(s) 49, 191, 205
MseI TTAA 3 cut(s) 18, 134, 161
MspR9I CCNGG 1 cut(s) 46
MvaI CCWGG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 150, 244
NarI GGCGCC 1 cut(s) 109
NdeII GATC 2 cut(s) 64, 223
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 2 cut(s) 43, 110
PaeR7I CTCGAG 1 cut(s) 51
PciSI GCTCTTC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 155
PleI GAGTC 1 cut(s) 43
PluTI GGCGCC 1 cut(s) 112
PmaCI CACGTG 1 cut(s) 141
PmlI CACGTG 1 cut(s) 141
PpsI GAGTC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 141
Psp1406I AACGTT 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 44
PspCI CACGTG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 43, 110
PstI CTGCAG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 223
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 3 cut(s) 18, 134, 161
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 2 cut(s) 64, 223
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 46
SetI ASST 5 cut(s) 18, 43, 143, 155, 249
SfcI CTRYAG 1 cut(s) 154
SfoI GGCGCC 1 cut(s) 110
Sfr274I CTCGAG 1 cut(s) 51
SlaI CTCGAG 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 22, 51
SmoI CTYRAG 2 cut(s) 22, 51
SspDI GGCGCC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 2 cut(s) 18, 143
TaqI TCGA 1 cut(s) 52
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 3 cut(s) 18, 134, 161
Tru9I TTAA 3 cut(s) 18, 134, 161
TscAI CASTG 2 cut(s) 83, 265
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 2 cut(s) 80, 231
TspRI CASTG 2 cut(s) 83, 265
XhoI CTCGAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.