Rmu_sc0004637.1_g000011
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004637.1
OG0000402
Physical Location & Seq
Forward (+)
49875 .. 50968
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004637.1_g000011.1.cds

Sequence Viewer

Length: 696 bp
atggaggacccgtcgggtttgagaagaggtgcatggaccatagaagaagataatcttctgaggcagtgtattgcaaagcatggagaaggaagatggcgcctgattcctccagctgcagatcgatgcgggaagagctgtaggctaagatgggtcaattatctgaaaccggatataaagagaggaaatttcgaggacgatgaagtagatctcctccataggcttcacaaccttttaggcaacaggtggtcattgattgctggaagacttccgggaagaacagcaaatgatgtgaaaaacttttggaacaccaagcggcgtcgggacaaaccacaaagattggtgaagcccatcatactaagacctaaaccacgaaggttaatctcgaccagttcactctgtttgacaggtcaaggtttaatcggagaccaaagtcagttaaaaaagaacattagcatggctttaccaacatcatcagcgtcaccaacatcaccaatacagcaggaaattgatcggttgcgagcctttttagaggaggaggagagtattcgaaccacaacctgttttagtttgacccctgaaggattatttattgaagatcatattcaatcagaaaacagcattagctgcagggctttaccaacatcaacagcattagaggatcagcttgattggtggatgacattcttagatcgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

231

Amino Acids

26.56

Weight (kDa)

9.15

Isoelectric Point (pI)

70.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 96
AciI CCGC 2 cut(s) 126, 313
AclWI GGATC 1 cut(s) 666
AcsI RAATTY 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 597
AcyI GRCGYC 2 cut(s) 97, 316
AgsI TTSAA 2 cut(s) 593, 605
AluBI AGCT 4 cut(s) 113, 135, 624, 664
AluI AGCT 4 cut(s) 113, 135, 624, 664
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 1 cut(s) 666
ApeKI GCWGC 2 cut(s) 113, 624
ApoI RAATTY 1 cut(s) 184
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 7, 36
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 3 cut(s) 352, 471, 480
AsuII TTCGAA 1 cut(s) 547
AvaII GGWCC 2 cut(s) 7, 36
BanI GGYRCC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 100, 611
BccI CCATC 3 cut(s) 87, 141, 356
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 417
BfmI CTRYAG 3 cut(s) 114, 136, 625
BfoI RGCGCY 1 cut(s) 100
BglII AGATCT 1 cut(s) 205
BisI GCNGC 3 cut(s) 114, 314, 625
BlsI GCNGC 3 cut(s) 115, 315, 626
Bme1390I CCNGG 1 cut(s) 270
Bme18I GGWCC 2 cut(s) 7, 36
BmgT120I GGNCC 2 cut(s) 7, 36
BmiI GGNNCC 2 cut(s) 9, 98
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 113
BoxI GACNNNNGTC 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 93
Bpu14I TTCGAA 1 cut(s) 547
BpuMI CCSGG 1 cut(s) 270
Bsa29I ATCGAT 2 cut(s) 121, 691
BsaHI GRCGYC 2 cut(s) 97, 316
BsaI GGTCTC 1 cut(s) 417
BsaWI WCCGGW 1 cut(s) 166
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 387
BseCI ATCGAT 2 cut(s) 121, 691
BseGI GGATG 1 cut(s) 681
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 387
BseRI GAGGAG 4 cut(s) 200, 545, 548, 551
BseXI GCAGC 2 cut(s) 100, 611
BshNI GGYRCC 1 cut(s) 96
BshVI ATCGAT 2 cut(s) 121, 691
BsiSI CCGG 2 cut(s) 167, 269
BslFI GGGAC 1 cut(s) 335
BsmAI GTCTC 1 cut(s) 417
BsmFI GGGAC 1 cut(s) 335
Bso31I GGTCTC 1 cut(s) 417
Bsp119I TTCGAA 1 cut(s) 547
Bsp143I GATC 6 cut(s) 118, 205, 508, 595, 658, 688
BspACI CCGC 2 cut(s) 126, 313
BspCNI CTCAG 1 cut(s) 51
BspDI ATCGAT 2 cut(s) 121, 691
BspLI GGNNCC 2 cut(s) 9, 98
BspMAI CTGCAG 2 cut(s) 118, 629
BspPI GGATC 1 cut(s) 666
BspQI GCTCTTC 1 cut(s) 125
BspT104I TTCGAA 1 cut(s) 547
BspT107I GGYRCC 1 cut(s) 96
BspTNI GGTCTC 1 cut(s) 417
BsrI ACTGG 1 cut(s) 387
BssMI GATC 6 cut(s) 118, 205, 508, 595, 658, 688
BssNI GRCGYC 2 cut(s) 97, 316
Bst6I CTCTTC 2 cut(s) 19, 125
BstACI GRCGYC 2 cut(s) 97, 316
BstAPI GCANNNNNTGC 1 cut(s) 624
BstBI TTCGAA 1 cut(s) 547
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 4 cut(s) 59, 143, 356, 685
BstF5I GGATG 1 cut(s) 681
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 6 cut(s) 121, 208, 511, 598, 661, 691
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 6 cut(s) 118, 205, 508, 595, 658, 688
BstMWI GCNNNNNNNGC 2 cut(s) 132, 624
BstPAI GACNNNNGTC 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 3 cut(s) 114, 136, 625
BstV1I GCAGC 2 cut(s) 100, 611
BstV2I GAAGAC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
Bsu15I ATCGAT 2 cut(s) 121, 691
BsuTUI ATCGAT 2 cut(s) 121, 691
BtsCI GGATG 1 cut(s) 681
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 519
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 7, 36
ClaI ATCGAT 2 cut(s) 121, 691
CseI GACGC 2 cut(s) 305, 465
CspCI CAANNNNNGTGG 2 cut(s) 318, 353
CviAII CATG 3 cut(s) 33, 80, 454
DdeI CTNAG 4 cut(s) 59, 143, 356, 685
DinI GGCGCC 1 cut(s) 98
DpnI GATC 6 cut(s) 120, 207, 510, 597, 660, 690
DpnII GATC 6 cut(s) 118, 205, 508, 595, 658, 688
Eam1104I CTCTTC 2 cut(s) 19, 125
EarI CTCTTC 2 cut(s) 19, 125
Eco31I GGTCTC 1 cut(s) 417
Eco47I GGWCC 2 cut(s) 7, 36
Eco57I CTGAAG 1 cut(s) 597
EcoO109I RGGNCCY 1 cut(s) 7
EgeI GGCGCC 1 cut(s) 98
EheI GGCGCC 1 cut(s) 98
FaeI CATG 3 cut(s) 36, 83, 457
FaiI YATR 8 cut(s) 34, 41, 81, 173, 216, 353, 455, 600
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FaqI GGGAC 1 cut(s) 335
FatI CATG 3 cut(s) 32, 79, 453
FauI CCCGC 1 cut(s) 119
Fnu4HI GCNGC 3 cut(s) 114, 314, 625
FokI GGATG 1 cut(s) 688
Fsp4HI GCNGC 3 cut(s) 114, 314, 625
GlaI GCGC 1 cut(s) 98
GluI GCNGC 3 cut(s) 114, 314, 625
GsuI CTGGAG 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 100
HapII CCGG 2 cut(s) 167, 269
HgaI GACGC 2 cut(s) 305, 465
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 2 cut(s) 97, 316
Hin1II CATG 3 cut(s) 36, 83, 457
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 1 cut(s) 103
HpaII CCGG 2 cut(s) 167, 269
HphI GGTGA 3 cut(s) 352, 471, 480
Hpy166II GTNNAC 1 cut(s) 392
Hpy188I TCNGA 4 cut(s) 60, 162, 422, 610
Hpy188III TCNNGA 2 cut(s) 320, 382
Hpy8I GTNNAC 1 cut(s) 392
Hpy99I CGWCG 2 cut(s) 16, 321
HpyAV CCTTC 3 cut(s) 80, 366, 572
HpyCH4V TGCA 4 cut(s) 32, 74, 116, 627
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 624
HpyF3I CTNAG 4 cut(s) 59, 143, 356, 685
Hsp92I GRCGYC 2 cut(s) 97, 316
Hsp92II CATG 3 cut(s) 36, 83, 457
HspAI GCGC 1 cut(s) 97
KasI GGCGCC 1 cut(s) 96
Kzo9I GATC 6 cut(s) 118, 205, 508, 595, 658, 688
LguI GCTCTTC 1 cut(s) 125
Lsp1109I GCAGC 2 cut(s) 100, 611
LweI GCATC 1 cut(s) 113
MaeIII GTNAC 1 cut(s) 477
MalI GATC 6 cut(s) 120, 207, 510, 597, 660, 690
MboI GATC 6 cut(s) 118, 205, 508, 595, 658, 688
MboII GAAGA 9 cut(s) 36, 47, 56, 59, 102, 142, 273, 285, 605
MflI RGATCY 1 cut(s) 205
MluCI AATT 3 cut(s) 154, 184, 504
Mly113I GGCGCC 1 cut(s) 97
MseI TTAA 3 cut(s) 377, 416, 437
MslI CAYNNNNRTG 1 cut(s) 452
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 2 cut(s) 167, 269
MspR9I CCNGG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 132, 624
NarI GGCGCC 1 cut(s) 97
NciI CCSGG 1 cut(s) 270
NdeII GATC 6 cut(s) 118, 205, 508, 595, 658, 688
NlaIII CATG 3 cut(s) 36, 83, 457
NlaIV GGNNCC 2 cut(s) 9, 98
NmuCI GTSAC 1 cut(s) 477
NspV TTCGAA 1 cut(s) 547
PciSI GCTCTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 103
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 3 cut(s) 115, 315, 626
PluTI GGCGCC 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 7
PshAI GACNNNNGTC 1 cut(s) 429
Psp5II RGGWCCY 1 cut(s) 7
PspN4I GGNNCC 2 cut(s) 9, 98
PspPI GGNCC 2 cut(s) 7, 36
PspPPI RGGWCCY 1 cut(s) 7
PstI CTGCAG 2 cut(s) 118, 629
PsuI RGATCY 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 452
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 3 cut(s) 377, 416, 437
SatI GCNGC 3 cut(s) 114, 314, 625
Sau3AI GATC 6 cut(s) 118, 205, 508, 595, 658, 688
Sau96I GGNCC 2 cut(s) 7, 36
ScrFI CCNGG 1 cut(s) 270
SfaNI GCATC 1 cut(s) 113
SfcI CTRYAG 3 cut(s) 114, 136, 625
SfoI GGCGCC 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 547
SinI GGWCC 2 cut(s) 7, 36
SmiMI CAYNNNNRTG 1 cut(s) 452
Sse9I AATT 3 cut(s) 154, 184, 504
SsiI CCGC 2 cut(s) 126, 313
SspDI GGCGCC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 268
TaqI TCGA 5 cut(s) 121, 189, 383, 547, 691
TasI AATT 3 cut(s) 154, 184, 504
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 3 cut(s) 377, 416, 437
Tru9I TTAA 3 cut(s) 377, 416, 437
TscAI CASTG 1 cut(s) 71
TseFI GTSAC 1 cut(s) 477
TseI GCWGC 2 cut(s) 113, 624
Tsp45I GTSAC 1 cut(s) 477
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 1 cut(s) 71
VpaK11BI GGWCC 2 cut(s) 7, 36
XapI RAATTY 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.