RLG00000008035
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000402
Physical Location & Seq
Forward (+)
24710279 .. 24711080
802 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008035

Sequence Viewer

Length: 426 bp
ATGATGACAGGTACTCATTTTAATGAGTACTCAGTGAGCCGAGACAGTCGGTTTACAGACCGGCGAATTGTACAGGGGCTTAAGTTGTGCATGCATGCTTCCGACTATCATATCAGTAATTTAGCGCTGAATACTGATATGGAGTTGAGAAAAGGTGCATGGACCAAAGAGGAAGATCATCTTCTCAGGAAGTGCATTGAAAAACATGGAGAAGGAAGATGGCACAAGATTCCTCTCCAAGCAGGCTTAAAGAGATGCAGAAGGAGCTGTAGAATGAGGTGGTTGAACTACCTGAAGCCAACCATCAAGAGAGGAGAATTTGAAGATGATGAAGTCGATCTAATGATTAAGCTTTATAAGCTTTTAGGAAACAGGCAAGGACTACATACTACTGATCGATTTCTCTATAACTTAATTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

142

Amino Acids

16.83

Weight (kDa)

9.51

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 51 - 98 8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 54 - 113 5.4e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AcsI RAATTY 1 cut(s) 317
AcuI CTGAAG 1 cut(s) 314
AfaI GTAC 3 cut(s) 13, 29, 72
AfeI AGCGCT 1 cut(s) 126
AflII CTTAAG 1 cut(s) 80
AgsI TTSAA 3 cut(s) 200, 286, 323
AluBI AGCT 3 cut(s) 267, 352, 361
AluI AGCT 3 cut(s) 267, 352, 361
Alw26I GTCTC 1 cut(s) 36
Aor51HI AGCGCT 1 cut(s) 126
ApoI RAATTY 1 cut(s) 317
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 162
AvaII GGWCC 1 cut(s) 162
BccI CCATC 2 cut(s) 213, 311
BcoDI GTCTC 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 268
BfoI RGCGCY 1 cut(s) 128
BfrI CTTAAG 1 cut(s) 80
BmcAI AGTACT 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 162
BmsI GCATC 1 cut(s) 245
Bsa29I ATCGAT 1 cut(s) 397
Bse118I RCCGGY 1 cut(s) 60
BseCI ATCGAT 1 cut(s) 397
BseMII CTCAG 2 cut(s) 45, 199
BseRI GAGGAG 1 cut(s) 327
BshVI ATCGAT 1 cut(s) 397
BsiSI CCGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 36
Bsp1407I TGTACA 1 cut(s) 70
Bsp143I GATC 3 cut(s) 175, 337, 394
BspCNI CTCAG 2 cut(s) 44, 198
BspDI ATCGAT 1 cut(s) 397
BspTI CTTAAG 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 60
BsrGI TGTACA 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 60
BssMI GATC 3 cut(s) 175, 337, 394
Bst4CI ACNGT 1 cut(s) 47
BstAFI CTTAAG 1 cut(s) 80
BstAUI TGTACA 1 cut(s) 70
BstC8I GCNNGC 3 cut(s) 92, 96, 244
BstDEI CTNAG 2 cut(s) 31, 185
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 3 cut(s) 178, 340, 397
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 3 cut(s) 175, 337, 394
BstMWI GCNNNNNNNGC 2 cut(s) 264, 358
BstNSI RCATGY 2 cut(s) 94, 98
BstSFI CTRYAG 1 cut(s) 268
Bsu15I ATCGAT 1 cut(s) 397
BsuTUI ATCGAT 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 3 cut(s) 92, 96, 244
CfoI GCGC 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 162
ClaI ATCGAT 1 cut(s) 397
Csp6I GTAC 3 cut(s) 12, 28, 71
CviAII CATG 4 cut(s) 91, 95, 159, 206
CviJI RGCY 7 cut(s) 39, 79, 246, 267, 298, 352, 361
CviKI_1 RGCY 7 cut(s) 39, 79, 246, 267, 298, 352, 361
CviQI GTAC 3 cut(s) 12, 28, 71
DdeI CTNAG 2 cut(s) 31, 185
DpnI GATC 3 cut(s) 177, 339, 396
DpnII GATC 3 cut(s) 175, 337, 394
Eco47I GGWCC 1 cut(s) 162
Eco47III AGCGCT 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 314
EcoT22I ATGCAT 1 cut(s) 96
FaeI CATG 4 cut(s) 94, 98, 162, 209
FaiI YATR 9 cut(s) 92, 96, 111, 140, 160, 207, 357, 387, 408
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FatI CATG 4 cut(s) 90, 94, 158, 205
GlaI GCGC 1 cut(s) 126
HaeII RGCGCY 1 cut(s) 128
HapII CCGG 1 cut(s) 61
HhaI GCGC 1 cut(s) 127
Hin1II CATG 4 cut(s) 94, 98, 162, 209
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HindIII AAGCTT 2 cut(s) 350, 359
HinfI GANTC 1 cut(s) 229
HpaII CCGG 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 187, 307
Hpy8I GTNNAC 1 cut(s) 54
HpyAV CCTTC 2 cut(s) 206, 255
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 5 cut(s) 90, 94, 158, 195, 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 358
HpyF3I CTNAG 2 cut(s) 31, 185
Hsp92II CATG 4 cut(s) 94, 98, 162, 209
HspAI GCGC 1 cut(s) 125
Kzo9I GATC 3 cut(s) 175, 337, 394
LmnI GCTCC 1 cut(s) 264
LpnPI CCDG 6 cut(s) 59, 74, 172, 228, 305, 358
LweI GCATC 1 cut(s) 245
MalI GATC 3 cut(s) 177, 339, 396
MboI GATC 3 cut(s) 175, 337, 394
MboII GAAGA 4 cut(s) 173, 185, 228, 335
MluCI AATT 5 cut(s) 66, 118, 317, 414, 421
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 4 cut(s) 163, 243, 270, 305
Mph1103I ATGCAT 1 cut(s) 96
MseI TTAA 6 cut(s) 21, 81, 248, 348, 413, 424
MslI CAYNNNNRTG 1 cut(s) 21
MspCI CTTAAG 1 cut(s) 80
MspI CCGG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 264, 358
NdeII GATC 3 cut(s) 175, 337, 394
NlaIII CATG 4 cut(s) 94, 98, 162, 209
NmeAIII GCCGAG 1 cut(s) 65
NsiI ATGCAT 1 cut(s) 96
NspI RCATGY 2 cut(s) 94, 98
PaeI GCATGC 2 cut(s) 94, 98
PfeI GAWTC 1 cut(s) 229
PsiI TTATAA 1 cut(s) 357
PspPI GGNCC 1 cut(s) 162
RsaI GTAC 3 cut(s) 13, 29, 72
RsaNI GTAC 3 cut(s) 12, 28, 71
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 6 cut(s) 21, 81, 248, 348, 413, 424
Sau3AI GATC 3 cut(s) 175, 337, 394
Sau96I GGNCC 1 cut(s) 162
ScaI AGTACT 1 cut(s) 29
SetI ASST 7 cut(s) 13, 157, 269, 281, 294, 354, 363
SfaNI GCATC 1 cut(s) 245
SfcI CTRYAG 1 cut(s) 268
SinI GGWCC 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SphI GCATGC 2 cut(s) 94, 98
Sse9I AATT 5 cut(s) 66, 118, 317, 414, 421
TaaI ACNGT 1 cut(s) 47
TaqI TCGA 2 cut(s) 336, 397
TasI AATT 5 cut(s) 66, 118, 317, 414, 421
TatI WGTACW 2 cut(s) 27, 70
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 6 cut(s) 21, 81, 248, 348, 413, 424
Tru9I TTAA 6 cut(s) 21, 81, 248, 348, 413, 424
TscAI CASTG 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 345
TspRI CASTG 1 cut(s) 39
Vha464I CTTAAG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 162
XapI RAATTY 1 cut(s) 317
XceI RCATGY 2 cut(s) 94, 98
ZrmI AGTACT 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.