MD17G1261000.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000402
Physical Location & Seq
Reverse (-)
32150472 .. 32153462
2991 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1261000.v1.1.491

Sequence Viewer

Length: 603 bp
ATGGAGGGATATAACGTTAACTTGAGTGTGATGAGAAAAGGTGCCTGGACTCGAGAGGAAGATGATCTTCTCAGGCAGTGCATTGAGATTCTTGGAGAAGGAAAGTGGCACCAAGTTCCATACAAAGCAGGCTTAAACAGGTGCAGGAAGAGCTGCAGACTAAGATGGTTGAACTATCTGAAGCCAAATATCAAGAGAGGAGACTTTACTGAGGATGAAGTAGATCTAATAATTAGGCTTCACAAGCTTTTAGGAAACAGGTGGTCGTTGATTGCTGGAAGACTTCCAGGAAGAACAGCGAATGATGTGAAAAATTATTGGAACACTCGATTACGGATCAATTCTCGCATGAAAACATTGCAAAATAATTCCCAAGAAACAAGAAAGACCATTGTGATCAGACCTCAACCCCGAAGTTTCATAAAAAGTTCAAATTACTTGAGCAGTAAAGAACCAATTATAGACCATATTCAATCAGAAGAGGATTTAAGTACGTCACCACAAACGTCGTCGTCGACAAACAATGGAAATGATTGGTGGAAGACCTTGTTAGAAGACGACGATATACTTTTGAAAGAACTGTATGTCCCAGTCTTGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

201

Amino Acids

23.41

Weight (kDa)

9.38

Isoelectric Point (pI)

56.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 60 4.9e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 74 3.1e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 66 - 110 1.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 69 - 119 3.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 41, 108
AccI GTMKAC 1 cut(s) 515
AclI AACGTT 1 cut(s) 15
AclWI GGATC 1 cut(s) 344
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 1 cut(s) 493
AgsI TTSAA 4 cut(s) 172, 432, 473, 574
AjnI CCWGG 2 cut(s) 44, 286
AloI GAACNNNNNNTCC 2 cut(s) 570, 602
AluBI AGCT 2 cut(s) 153, 247
AluI AGCT 2 cut(s) 153, 247
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 1 cut(s) 344
Ama87I CYCGRG 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 489
AvaI CYCGRG 1 cut(s) 51
BanI GGYRCC 2 cut(s) 41, 108
BbsI GAAGAC 3 cut(s) 286, 548, 561
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 159
BciT130I CCWGG 2 cut(s) 46, 288
BclI TGATCA 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 154
BglII AGATCT 1 cut(s) 223
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bme1390I CCNGG 2 cut(s) 46, 288
BmeT110I CYCGRG 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 43, 110
BmrFI CCNGG 2 cut(s) 46, 288
BmrI ACTGGG 1 cut(s) 584
BmuI ACTGGG 1 cut(s) 584
BpiI GAAGAC 3 cut(s) 286, 548, 561
BpuEI CTTGAG 2 cut(s) 43, 460
Bse1I ACTGG 1 cut(s) 590
Bse3DI GCAATG 1 cut(s) 356
BseBI CCWGG 2 cut(s) 46, 288
BseGI GGATG 1 cut(s) 220
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 2 cut(s) 85, 201
BseNI ACTGG 1 cut(s) 590
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 163
BshNI GGYRCC 2 cut(s) 41, 108
BsiHKCI CYCGRG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 572
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 572
BsoBI CYCGRG 1 cut(s) 51
Bsp143I GATC 4 cut(s) 64, 223, 336, 396
BspCNI CTCAG 2 cut(s) 84, 202
BspLI GGNNCC 2 cut(s) 43, 110
BspMAI CTGCAG 1 cut(s) 158
BspPI GGATC 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 143
BspT107I GGYRCC 2 cut(s) 41, 108
BsrDI GCAATG 1 cut(s) 356
BsrI ACTGG 1 cut(s) 590
BssMI GATC 4 cut(s) 64, 223, 336, 396
Bst2UI CCWGG 2 cut(s) 46, 288
Bst4CI ACNGT 1 cut(s) 582
Bst6I CTCTTC 2 cut(s) 143, 474
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 3 cut(s) 71, 161, 210
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 4 cut(s) 67, 226, 339, 399
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 4 cut(s) 64, 223, 336, 396
BstMWI GCNNNNNNNGC 2 cut(s) 150, 244
BstNI CCWGG 2 cut(s) 46, 288
BstSCI CCNGG 2 cut(s) 44, 286
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 3 cut(s) 286, 548, 561
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BtsCI GGATG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 492
CviAII CATG 1 cut(s) 349
CviJI RGCY 5 cut(s) 132, 153, 184, 238, 247
CviKI_1 RGCY 5 cut(s) 132, 153, 184, 238, 247
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 3 cut(s) 71, 161, 210
DpnI GATC 4 cut(s) 66, 225, 338, 398
DpnII GATC 4 cut(s) 64, 223, 336, 396
Eam1104I CTCTTC 2 cut(s) 143, 474
EarI CTCTTC 2 cut(s) 143, 474
Eco57I CTGAAG 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 44, 286
FaeI CATG 1 cut(s) 352
FaiI YATR 8 cut(s) 12, 121, 350, 422, 461, 468, 566, 585
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 1 cut(s) 572
FatI CATG 1 cut(s) 348
FbaI TGATCA 1 cut(s) 396
FblI GTMKAC 1 cut(s) 515
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 154
Hin1II CATG 1 cut(s) 352
HincII GTYRAC 2 cut(s) 19, 516
HindII GTYRAC 2 cut(s) 19, 516
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 2 cut(s) 49, 88
HpaI GTTAAC 1 cut(s) 19
HphI GGTGA 1 cut(s) 489
Hpy166II GTNNAC 2 cut(s) 19, 516
Hpy188I TCNGA 3 cut(s) 180, 401, 478
Hpy188III TCNNGA 3 cut(s) 53, 193, 595
Hpy8I GTNNAC 2 cut(s) 19, 516
Hpy99I CGWCG 4 cut(s) 511, 514, 517, 563
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 582
HpyCH4IV ACGT 3 cut(s) 15, 494, 506
HpyCH4V TGCA 4 cut(s) 81, 144, 156, 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 244
HpyF3I CTNAG 3 cut(s) 71, 161, 210
HpySE526I ACGT 3 cut(s) 15, 494, 506
Hsp92II CATG 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 396
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 4 cut(s) 64, 223, 336, 396
LguI GCTCTTC 1 cut(s) 143
Lsp1109I GCAGC 1 cut(s) 140
MaeII ACGT 3 cut(s) 15, 494, 506
MaeIII GTNAC 1 cut(s) 495
MalI GATC 4 cut(s) 66, 225, 338, 398
MboI GATC 4 cut(s) 64, 223, 336, 396
MboII GAAGA 8 cut(s) 59, 71, 160, 291, 303, 491, 553, 566
MflI RGATCY 1 cut(s) 223
MluCI AATT 6 cut(s) 231, 313, 340, 367, 433, 456
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 5 cut(s) 49, 191, 205, 414, 475
MseI TTAA 3 cut(s) 18, 134, 488
MspR9I CCNGG 2 cut(s) 46, 288
MvaI CCWGG 2 cut(s) 46, 288
MwoI GCNNNNNNNGC 2 cut(s) 150, 244
NdeII GATC 4 cut(s) 64, 223, 336, 396
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 2 cut(s) 43, 110
NmuCI GTSAC 1 cut(s) 495
PaeR7I CTCGAG 1 cut(s) 51
PciSI GCTCTTC 1 cut(s) 143
PcsI WCGNNNNNNNCGW 1 cut(s) 512
PfeI GAWTC 1 cut(s) 88
PfoI TCCNGGA 1 cut(s) 286
PkrI GCNGC 1 cut(s) 155
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Psp1406I AACGTT 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 44, 286
PspGI CCWGG 2 cut(s) 44, 286
PspN4I GGNNCC 2 cut(s) 43, 110
PstI CTGCAG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 223
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
SalI GTCGAC 1 cut(s) 514
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 3 cut(s) 18, 134, 488
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 4 cut(s) 64, 223, 336, 396
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 46, 288
SfcI CTRYAG 1 cut(s) 154
Sfr274I CTCGAG 1 cut(s) 51
SlaI CTCGAG 1 cut(s) 51
SmlI CTYRAG 4 cut(s) 22, 51, 439, 595
SmoI CTYRAG 4 cut(s) 22, 51, 439, 595
Sse9I AATT 6 cut(s) 231, 313, 340, 367, 433, 456
StyD4I CCNGG 2 cut(s) 44, 286
TaaI ACNGT 1 cut(s) 582
TaiI ACGT 3 cut(s) 18, 497, 509
TaqI TCGA 3 cut(s) 52, 328, 515
TasI AATT 6 cut(s) 231, 313, 340, 367, 433, 456
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 3 cut(s) 18, 134, 488
Tru9I TTAA 3 cut(s) 18, 134, 488
TscAI CASTG 1 cut(s) 83
TseFI GTSAC 1 cut(s) 495
TseI GCWGC 1 cut(s) 153
Tsp45I GTSAC 1 cut(s) 495
TspDTI ATGAA 3 cut(s) 231, 365, 409
TspGWI ACGGA 1 cut(s) 349
TspRI CASTG 1 cut(s) 83
XhoI CTCGAG 1 cut(s) 51
XmiI GTMKAC 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.