Rh4BG197000
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000402
Physical Location & Seq
Forward (+)
33950286 .. 34010387
60102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG197000.1

Sequence Viewer

Length: 1269 bp
ATGGAGTTGAGAAAAGGTGCATGGACCAAAGAGGAAGATCATCTTCTCAGGAAATACATTGAAAAACATGGAGAAGGAAGATGGCACAAGATTCCTCTCCAAGCAGGCTTAAATAGATGCAGAAAGAGCTGTAGAATGAGGTGGTTGAACTACCTGAAGCCAACCATCAAGAGAGGAGAATTTGAAGATGATGAAGTCGATCTAATGATTAAGCTTTATAAGCTTTTAGGAAACAGGTGGTCATTGATTGCTGGCCGACTTCCAGGAAGAACCTCAAATGATGTGAAAAACTATTGGAATGCTCGGCGAAGGAGAAATGAATTGAACATCGAAAAAGATAAATCTCGACAAATGACAAAGACCCCTATAATAAAGCCTCGACCACGGACCTTCACAAAAAGTTTACATATTTCGGGTGACAGAGCAGCAACCTCAAAGAATAGTAATATAAACATATCATTACCTCCAGTAAATGGACTTGATGAGTGGAAAATTGTACCAGTGGAACATGTCTCTACAAACTTATGGGTTCAAGATATGGCCTCAGTGACCGAAAAATGTGTCAATGTTGCCGAGCGAAGTTTCGAATCTGACCTTTGTAATTCATTACTGAATACTGATATGGAGTTGAGAAAAGGTGCATGGACCAAAGAGGAAGATCATCTTCTCAGGAAATGCATTGAAAAACATGGAGAAGGAAGATGGAACAAGATTCCTCTCCAAGCAGGCTTAAAGAGATGCAGAAAGAGCTGTAGAATGAGGTGGTTGAACTACCTGAAGCCCACCATCAAGAGAGGAGAATTTGAAGATGATGAAGTCGATCTGATGATTAAGCTTTATAAGCTTTTAGGAAACAGGTGGTCATTGATTGCTGGCCGACTTCCAGGAAGAACCTCAAATGATGTGAAAAACTATTGGAATCCTCGGCGAAGGAGAAATATGGATTTGAACATTGAAAAAGACAAATCTCGACAAATGACAAAGACCCTTATAATAAAGCCTCGACCACGAACCTTCACAAAAAGTTTACATATTCCGGGTGACAGAGCAGCAACCTCAAAGAATGCTAATATAAACATATCATTACCTCCAGTAAATGGACTTGATGAGTGGAAAATTGTACCAGCGGAACATGTCCCTACAAACTTATGGGTTCAAGATATGGCCTCAGTGACCGAAACATGTGTCAATGTTGCCGAACGAAGTTTCGAATCTGACCTTTGGCATTTTCTCCAAGAAGAGATGACAGAACAAGATTCAGAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

422

Amino Acids

49.49

Weight (kDa)

9.67

Isoelectric Point (pI)

58.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 52 1.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 8 - 66 1.2e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 58 - 100 4.3e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 212 - 259 3.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 215 - 273 4.1e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 265 - 307 5.5e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 219, 840, 992
AccB7I CCANNNNNTGG 2 cut(s) 473, 1097
AciI CCGC 1 cut(s) 1127
AcoI YGGCCR 2 cut(s) 253, 874
AcsI RAATTY 2 cut(s) 179, 800
AcuI CTGAAG 2 cut(s) 176, 797
AfaI GTAC 2 cut(s) 498, 1122
AfiI CCNNNNNNNGG 2 cut(s) 473, 1097
AflIII ACRYGT 3 cut(s) 508, 1132, 1181
AjnI CCWGG 2 cut(s) 262, 883
AluBI AGCT 6 cut(s) 129, 214, 223, 750, 835, 844
AluI AGCT 6 cut(s) 129, 214, 223, 750, 835, 844
Alw26I GTCTC 1 cut(s) 517
AoxI GGCC 4 cut(s) 253, 540, 874, 1164
ApeKI GCWGC 2 cut(s) 425, 1049
ApoI RAATTY 2 cut(s) 179, 800
ArsI GACNNNNNNTTYG 4 cut(s) 546, 578, 1170, 1202
AspS9I GGNCC 3 cut(s) 24, 387, 645
AsuC2I CCSGG 1 cut(s) 1038
AsuHPI GGTGA 2 cut(s) 428, 1052
AsuII TTCGAA 2 cut(s) 585, 1209
AvaII GGWCC 3 cut(s) 24, 387, 645
BbvI GCAGC 2 cut(s) 437, 1061
BccI CCATC 4 cut(s) 75, 173, 696, 794
BciT130I CCWGG 2 cut(s) 264, 885
BcnI CCSGG 1 cut(s) 1038
BcoDI GTCTC 1 cut(s) 517
BfmI CTRYAG 2 cut(s) 130, 751
BisI GCNGC 2 cut(s) 426, 1050
BlsI GCNGC 2 cut(s) 427, 1051
Bme1390I CCNGG 3 cut(s) 264, 885, 1038
Bme18I GGWCC 3 cut(s) 24, 387, 645
BmgT120I GGNCC 3 cut(s) 24, 387, 645
BmrFI CCNGG 3 cut(s) 264, 885, 1038
BmsI GCATC 2 cut(s) 107, 728
BpmI CTGGAG 2 cut(s) 450, 1074
Bpu14I TTCGAA 2 cut(s) 585, 1209
BpuMI CCSGG 1 cut(s) 1038
BsaJI CCNNGG 2 cut(s) 383, 923
Bsc4I CCNNNNNNNGG 2 cut(s) 473, 1097
Bse1I ACTGG 3 cut(s) 467, 500, 1091
BseBI CCWGG 2 cut(s) 264, 885
BseDI CCNNGG 2 cut(s) 383, 923
BseLI CCNNNNNNNGG 2 cut(s) 473, 1097
BseMII CTCAG 4 cut(s) 61, 558, 682, 1182
BseNI ACTGG 3 cut(s) 467, 500, 1091
BseRI GAGGAG 2 cut(s) 189, 810
BseXI GCAGC 2 cut(s) 437, 1061
BshFI GGCC 4 cut(s) 255, 542, 876, 1166
BsiSI CCGG 1 cut(s) 1037
BslFI GGGAC 1 cut(s) 1121
BslI CCNNNNNNNGG 2 cut(s) 473, 1097
BsmAI GTCTC 1 cut(s) 517
BsmFI GGGAC 1 cut(s) 1121
BsmI GAATGC 2 cut(s) 304, 1069
BsnI GGCC 4 cut(s) 255, 542, 876, 1166
Bsp119I TTCGAA 2 cut(s) 585, 1209
Bsp143I GATC 4 cut(s) 37, 199, 658, 820
BspACI CCGC 1 cut(s) 1127
BspANI GGCC 4 cut(s) 255, 542, 876, 1166
BspCNI CTCAG 4 cut(s) 60, 557, 681, 1181
BspT104I TTCGAA 2 cut(s) 585, 1209
BsrI ACTGG 3 cut(s) 467, 500, 1091
BssECI CCNNGG 2 cut(s) 383, 923
BssMI GATC 4 cut(s) 37, 199, 658, 820
Bst2UI CCWGG 2 cut(s) 264, 885
Bst6I CTCTTC 1 cut(s) 1233
BstBI TTCGAA 2 cut(s) 585, 1209
BstC8I GCNNGC 4 cut(s) 106, 253, 727, 874
BstDEI CTNAG 4 cut(s) 47, 544, 668, 1168
BstDSI CCRYGG 1 cut(s) 383
BstKTI GATC 4 cut(s) 40, 202, 661, 823
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 4 cut(s) 37, 199, 658, 820
BstMWI GCNNNNNNNGC 4 cut(s) 126, 220, 747, 841
BstNI CCWGG 2 cut(s) 264, 885
BstNSI RCATGY 3 cut(s) 512, 1136, 1185
BstSCI CCNGG 3 cut(s) 262, 883, 1036
BstSFI CTRYAG 2 cut(s) 130, 751
BstV1I GCAGC 2 cut(s) 437, 1061
BsuRI GGCC 4 cut(s) 255, 542, 876, 1166
BtgI CCRYGG 1 cut(s) 383
BtsIMutI CAGTG 3 cut(s) 507, 552, 1176
Cac8I GCNNGC 4 cut(s) 106, 253, 727, 874
Cfr13I GGNCC 3 cut(s) 24, 387, 645
Csp6I GTAC 2 cut(s) 497, 1121
CviAII CATG 7 cut(s) 21, 68, 509, 642, 689, 1133, 1182
CviQI GTAC 2 cut(s) 497, 1121
DdeI CTNAG 4 cut(s) 47, 544, 668, 1168
DpnI GATC 4 cut(s) 39, 201, 660, 822
DpnII GATC 4 cut(s) 37, 199, 658, 820
EaeI YGGCCR 2 cut(s) 253, 874
Eam1104I CTCTTC 1 cut(s) 1233
EarI CTCTTC 1 cut(s) 1233
Eco47I GGWCC 3 cut(s) 24, 387, 645
Eco57I CTGAAG 2 cut(s) 176, 797
EcoRII CCWGG 2 cut(s) 262, 883
EcoT22I ATGCAT 1 cut(s) 680
FaeI CATG 7 cut(s) 24, 71, 512, 645, 692, 1136, 1185
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 648, 680
FaqI GGGAC 1 cut(s) 1121
FatI CATG 7 cut(s) 20, 67, 508, 641, 688, 1132, 1181
Fnu4HI GCNGC 2 cut(s) 426, 1050
Fsp4HI GCNGC 2 cut(s) 426, 1050
GluI GCNGC 2 cut(s) 426, 1050
GsuI CTGGAG 2 cut(s) 450, 1074
HaeIII GGCC 4 cut(s) 255, 542, 876, 1166
HapII CCGG 1 cut(s) 1037
Hin1II CATG 7 cut(s) 24, 71, 512, 645, 692, 1136, 1185
HindIII AAGCTT 4 cut(s) 212, 221, 833, 842
HinfI GANTC 6 cut(s) 91, 587, 712, 919, 1211, 1256
HpaII CCGG 1 cut(s) 1037
HphI GGTGA 2 cut(s) 428, 1052
Hpy166II GTNNAC 2 cut(s) 404, 1028
Hpy188I TCNGA 4 cut(s) 592, 825, 1216, 1261
Hpy188III TCNNGA 8 cut(s) 49, 169, 345, 533, 670, 790, 969, 1157
Hpy8I GTNNAC 2 cut(s) 404, 1028
HpyAV CCTTC 6 cut(s) 68, 303, 400, 689, 924, 1024
HpyCH4V TGCA 5 cut(s) 20, 120, 641, 678, 741
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 220, 747, 841
HpyF3I CTNAG 4 cut(s) 47, 544, 668, 1168
Hsp92II CATG 7 cut(s) 24, 71, 512, 645, 692, 1136, 1185
Kzo9I GATC 4 cut(s) 37, 199, 658, 820
Lsp1109I GCAGC 2 cut(s) 437, 1061
LweI GCATC 2 cut(s) 107, 728
MaeIII GTNAC 4 cut(s) 416, 547, 1040, 1171
MalI GATC 4 cut(s) 39, 201, 660, 822
MboI GATC 4 cut(s) 37, 199, 658, 820
MluCI AATT 6 cut(s) 179, 320, 492, 601, 800, 1116
Mph1103I ATGCAT 1 cut(s) 680
MseI TTAA 4 cut(s) 110, 210, 731, 831
MspA1I CMGCKG 1 cut(s) 1127
MspI CCGG 1 cut(s) 1037
MspR9I CCNGG 3 cut(s) 264, 885, 1038
Mva1269I GAATGC 2 cut(s) 304, 1069
MvaI CCWGG 2 cut(s) 264, 885
MwoI GCNNNNNNNGC 4 cut(s) 126, 220, 747, 841
NciI CCSGG 1 cut(s) 1038
NdeII GATC 4 cut(s) 37, 199, 658, 820
NlaIII CATG 7 cut(s) 24, 71, 512, 645, 692, 1136, 1185
NmeAIII GCCGAG 3 cut(s) 283, 598, 904
NmuCI GTSAC 4 cut(s) 416, 547, 1040, 1171
NsiI ATGCAT 1 cut(s) 680
NspI RCATGY 3 cut(s) 512, 1136, 1185
NspV TTCGAA 2 cut(s) 585, 1209
PciI ACATGT 3 cut(s) 508, 1132, 1181
PctI GAATGC 2 cut(s) 304, 1069
PfeI GAWTC 6 cut(s) 91, 587, 712, 919, 1211, 1256
PflMI CCANNNNNTGG 2 cut(s) 473, 1097
PfoI TCCNGGA 2 cut(s) 262, 883
PkrI GCNGC 2 cut(s) 427, 1051
PscI ACATGT 3 cut(s) 508, 1132, 1181
PsiI TTATAA 3 cut(s) 219, 840, 992
Psp6I CCWGG 2 cut(s) 262, 883
PspGI CCWGG 2 cut(s) 262, 883
PspPI GGNCC 3 cut(s) 24, 387, 645
RsaI GTAC 2 cut(s) 498, 1122
RsaNI GTAC 2 cut(s) 497, 1121
SaqAI TTAA 4 cut(s) 110, 210, 731, 831
SatI GCNGC 2 cut(s) 426, 1050
Sau3AI GATC 4 cut(s) 37, 199, 658, 820
Sau96I GGNCC 3 cut(s) 24, 387, 645
ScrFI CCNGG 3 cut(s) 264, 885, 1038
SfaNI GCATC 2 cut(s) 107, 728
SfcI CTRYAG 2 cut(s) 130, 751
SfuI TTCGAA 2 cut(s) 585, 1209
SinI GGWCC 3 cut(s) 24, 387, 645
Sse9I AATT 6 cut(s) 179, 320, 492, 601, 800, 1116
SsiI CCGC 1 cut(s) 1127
StyD4I CCNGG 3 cut(s) 262, 883, 1036
TaqI TCGA 9 cut(s) 198, 330, 346, 379, 585, 819, 970, 1003, 1209
TaqII GACCGA 2 cut(s) 566, 1190
TasI AATT 6 cut(s) 179, 320, 492, 601, 800, 1116
TfiI GAWTC 6 cut(s) 91, 587, 712, 919, 1211, 1256
Tru1I TTAA 4 cut(s) 110, 210, 731, 831
Tru9I TTAA 4 cut(s) 110, 210, 731, 831
TscAI CASTG 3 cut(s) 507, 552, 1176
TseFI GTSAC 4 cut(s) 416, 547, 1040, 1171
TseI GCWGC 2 cut(s) 425, 1049
Tsp45I GTSAC 4 cut(s) 416, 547, 1040, 1171
TspDTI ATGAA 4 cut(s) 207, 333, 594, 828
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 3 cut(s) 507, 552, 1176
Van91I CCANNNNNTGG 2 cut(s) 473, 1097
VpaK11BI GGWCC 3 cut(s) 24, 387, 645
XapI RAATTY 2 cut(s) 179, 800
XceI RCATGY 3 cut(s) 512, 1136, 1185
Zsp2I ATGCAT 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.