Rh3DG014800
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000402
Physical Location & Seq
Reverse (-)
883814 .. 885764
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG014800.1

Sequence Viewer

Length: 750 bp
ATGGGTGGTATTCCATGGACTAAGGAAGAGGATCAGTTGCTGAGGAAATGCATAGAGAAGTATGGAGAAGGCAAATGGCATCGAATTCCTCACTTAGCCGGTCTAAACAGGTGCCGTAAGAGCTGCAGGCTTCGGTGGCTAAACTACCTTCGGCCGAACATCAAGAGAGGGAGCTTTGAACAAGAGGAAGTTGAGCTCATCATCCAGCTCCAAAGGCTCTTGGGAAACAGGTGGTCATTAGTTGCAGCTAGGCTTCCGGGGAGGACTGGTAATGATGTGAAGAACTATTGGAATTGTCACTTGAGCAAAAAGCTAAATGCTCAAGAAACTCATGGTGATCATCAGAAGCTTAATCATGCAGGGAATAATAATTTACAAGTCATTAGAGCCCAAGCTTCAAAATACGCCAGCTCAAACTCAAAGAGGTCAATGATAAGCAGTCCTCTTGAGGATCAAACTTGCCAAGCCTTGGAAGAATGTAGCAAAGCATCAGTGGCAATGCTCTGCAATATTGATAAAGATCAGGGGCAGATCAGTCAGATAGTTGAGAGAGAGGATAGCAACAATCTATGTGTGGAAGAAGAACATGAGGGGAACAATGACTTCATGGGTGATTTGGGAATGGTAGACCTTGATCAATTTGAACAAGTTATAGAGCAATATGATCAAGAGTTCAACGACAAAAACAAGAAATGGGAGTGGGATGACTCCATCTTGGACATGGACCTTTGGGATACTGATTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

249

Amino Acids

28.88

Weight (kDa)

5.35

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 50 2.5e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 6 - 65 4.2e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 56 - 100 2.6e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 60 - 107 3.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 111
AccB7I CCANNNNNTGG 1 cut(s) 469
AccI GTMKAC 1 cut(s) 627
AclWI GGATC 2 cut(s) 39, 459
AcoI YGGCCR 1 cut(s) 152
AcsI RAATTY 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 469
AgsI TTSAA 4 cut(s) 179, 399, 644, 676
AluBI AGCT 9 cut(s) 123, 174, 196, 208, 248, 313, 349, 395, 411
AluI AGCT 9 cut(s) 123, 174, 196, 208, 248, 313, 349, 395, 411
Alw21I GWGCWC 1 cut(s) 198
AlwI GGATC 2 cut(s) 39, 459
AlwNI CAGNNNCTG 1 cut(s) 40
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 123, 245
ApoI RAATTY 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 724
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 347, 623
AvaII GGWCC 1 cut(s) 724
BanI GGYRCC 1 cut(s) 111
BanII GRGCYC 2 cut(s) 198, 391
Bbv12I GWGCWC 1 cut(s) 198
BbvCI CCTCAGC 1 cut(s) 41
BbvI GCAGC 2 cut(s) 110, 257
BccI CCATC 1 cut(s) 719
BceAI ACGGC 1 cut(s) 99
BciVI GTATCC 1 cut(s) 727
BclI TGATCA 3 cut(s) 337, 634, 664
BcnI CCSGG 1 cut(s) 258
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 124
BfuI GTATCC 1 cut(s) 727
BisI GCNGC 2 cut(s) 124, 246
BlsI GCNGC 2 cut(s) 125, 247
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 1 cut(s) 724
BmgT120I GGNCC 1 cut(s) 724
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 2 cut(s) 88, 497
Bpu10I CCTNAGC 1 cut(s) 41
BpuEI CTTGAG 3 cut(s) 306, 322, 467
BpuMI CCSGG 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 519
BsaJI CCNNGG 3 cut(s) 14, 257, 468
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 504
Bse8I GATNNNNATC 1 cut(s) 519
BseDI CCNNGG 3 cut(s) 14, 257, 468
BseGI GGATG 2 cut(s) 201, 709
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 271
BseX3I CGGCCG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 110, 257
Bsh1285I CGRYCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 111
BsiEI CGRYCG 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 2 cut(s) 99, 257
BslI CCNNNNNNNGG 1 cut(s) 469
BsnI GGCC 1 cut(s) 154
Bsp1286I GDGCHC 2 cut(s) 198, 391
Bsp143I GATC 7 cut(s) 31, 337, 451, 520, 531, 634, 664
Bsp19I CCATGG 1 cut(s) 14
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 113
BspMAI CTGCAG 1 cut(s) 128
BspPI GGATC 2 cut(s) 39, 459
BspT107I GGYRCC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 504
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 14, 257, 468
BssMI GATC 7 cut(s) 31, 337, 451, 520, 531, 634, 664
BssT1I CCWWGG 2 cut(s) 14, 468
Bst6I CTCTTC 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 128, 409
BstDEI CTNAG 3 cut(s) 21, 41, 94
BstDSI CCRYGG 1 cut(s) 14
BstF5I GGATG 2 cut(s) 201, 709
BstKTI GATC 7 cut(s) 34, 340, 454, 523, 534, 637, 667
BstMBI GATC 7 cut(s) 31, 337, 451, 520, 531, 634, 664
BstMCI CGRYCG 1 cut(s) 155
BstMWI GCNNNNNNNGC 4 cut(s) 120, 136, 214, 494
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 110, 257
BstZI CGGCCG 1 cut(s) 152
BsuI GTATCC 1 cut(s) 727
BsuRI GGCC 1 cut(s) 154
BtgI CCRYGG 1 cut(s) 14
BtsCI GGATG 2 cut(s) 201, 709
BtsIMutI CAGTG 1 cut(s) 498
Cac8I GCNNGC 2 cut(s) 128, 409
CaiI CAGNNNCTG 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 724
CviAII CATG 6 cut(s) 15, 332, 356, 587, 607, 721
DdeI CTNAG 3 cut(s) 21, 41, 94
DpnI GATC 7 cut(s) 33, 339, 453, 522, 533, 636, 666
DpnII GATC 7 cut(s) 31, 337, 451, 520, 531, 634, 664
EaeI YGGCCR 1 cut(s) 152
EagI CGGCCG 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 196
EclXI CGGCCG 1 cut(s) 152
Eco130I CCWWGG 2 cut(s) 14, 468
Eco24I GRGCYC 2 cut(s) 198, 391
Eco47I GGWCC 1 cut(s) 724
Eco52I CGGCCG 1 cut(s) 152
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 84
EcoT14I CCWWGG 2 cut(s) 14, 468
EcoT22I ATGCAT 1 cut(s) 53
EcoT38I GRGCYC 2 cut(s) 198, 391
ErhI CCWWGG 2 cut(s) 14, 468
FaeI CATG 6 cut(s) 18, 335, 359, 590, 610, 724
FatI CATG 6 cut(s) 14, 331, 355, 586, 606, 720
FbaI TGATCA 3 cut(s) 337, 634, 664
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 2 cut(s) 124, 246
FokI GGATG 2 cut(s) 188, 716
FriOI GRGCYC 2 cut(s) 198, 391
Fsp4HI GCNGC 2 cut(s) 124, 246
FspBI CTAG 1 cut(s) 249
GluI GCNGC 2 cut(s) 124, 246
HaeIII GGCC 1 cut(s) 154
HapII CCGG 2 cut(s) 99, 257
Hin1II CATG 6 cut(s) 18, 335, 359, 590, 610, 724
HindIII AAGCTT 2 cut(s) 347, 393
HinfI GANTC 2 cut(s) 707, 740
HpaII CCGG 2 cut(s) 99, 257
HphI GGTGA 2 cut(s) 347, 623
Hpy166II GTNNAC 1 cut(s) 628
Hpy188I TCNGA 2 cut(s) 345, 540
Hpy188III TCNNGA 4 cut(s) 163, 323, 446, 668
Hpy8I GTNNAC 1 cut(s) 628
HpyAV CCTTC 2 cut(s) 62, 158
HpyCH4V TGCA 5 cut(s) 51, 126, 245, 359, 507
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 136, 214, 494
HpyF3I CTNAG 3 cut(s) 21, 41, 94
Hsp92II CATG 6 cut(s) 18, 335, 359, 590, 610, 724
Ksp22I TGATCA 3 cut(s) 337, 634, 664
Kzo9I GATC 7 cut(s) 31, 337, 451, 520, 531, 634, 664
LmnI GCTCC 2 cut(s) 171, 213
Lsp1109I GCAGC 2 cut(s) 110, 257
LweI GCATC 2 cut(s) 88, 497
MaeI CTAG 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 296
MalI GATC 7 cut(s) 33, 339, 453, 522, 533, 636, 666
MboI GATC 7 cut(s) 31, 337, 451, 520, 531, 634, 664
MboII GAAGA 6 cut(s) 38, 292, 485, 590, 593, 735
MhlI GDGCHC 2 cut(s) 198, 391
MluCI AATT 4 cut(s) 84, 292, 370, 638
MlyI GAGTC 1 cut(s) 701
Mph1103I ATGCAT 1 cut(s) 53
MseI TTAA 1 cut(s) 351
MspI CCGG 2 cut(s) 99, 257
MspR9I CCNGG 1 cut(s) 258
MwoI GCNNNNNNNGC 4 cut(s) 120, 136, 214, 494
NciI CCSGG 1 cut(s) 258
NcoI CCATGG 1 cut(s) 14
NdeII GATC 7 cut(s) 31, 337, 451, 520, 531, 634, 664
NlaIII CATG 6 cut(s) 18, 335, 359, 590, 610, 724
NlaIV GGNNCC 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 296
NsiI ATGCAT 1 cut(s) 53
PfeI GAWTC 1 cut(s) 740
PflMI CCANNNNNTGG 1 cut(s) 469
PkrI GCNGC 2 cut(s) 125, 247
PleI GAGTC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 701
Psp124BI GAGCTC 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 724
PstI CTGCAG 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 40
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 2 cut(s) 124, 246
Sau3AI GATC 7 cut(s) 31, 337, 451, 520, 531, 634, 664
Sau96I GGNCC 1 cut(s) 724
SchI GAGTC 1 cut(s) 701
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 2 cut(s) 198, 391
SfaNI GCATC 2 cut(s) 88, 497
SfcI CTRYAG 1 cut(s) 124
SinI GGWCC 1 cut(s) 724
SmlI CTYRAG 3 cut(s) 301, 321, 446
SmoI CTYRAG 3 cut(s) 301, 321, 446
Sse9I AATT 4 cut(s) 84, 292, 370, 638
SspI AATATT 1 cut(s) 511
SspMI CTAG 1 cut(s) 249
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 2 cut(s) 14, 468
TaqI TCGA 1 cut(s) 82
TasI AATT 4 cut(s) 84, 292, 370, 638
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 498
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 2 cut(s) 123, 245
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 595, 735
TspRI CASTG 1 cut(s) 498
Van91I CCANNNNNTGG 1 cut(s) 469
VpaK11BI GGWCC 1 cut(s) 724
XapI RAATTY 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 1 cut(s) 718
XmiI GTMKAC 1 cut(s) 627
XspI CTAG 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.