Rh3DG341700
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000402
Physical Location & Seq
Forward (+)
38220073 .. 38221826
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG341700.1

Sequence Viewer

Length: 744 bp
ATGGATCGGGCTTGTAACAACAACTTGGGTGTGAGAAAAGGTGCCTGGACTAGAGAGGAAGATGATCTTCTCAGGCATTGCATGAAGACTCATGGAGAAGAAAAGTGGCACCAGGTTCCTTCCAAAGCAGGTTTGAACAGATGCAGGAAGAGCTGCAGACTAAGGTGGCTCAACTATCTGAAGCCAAACATCAAAAGAGGTGGCTTTACGGAGGATGAAACTGATCTAATATTTAGGCTTCACAAGCTTTTGGGAAACAGGTGGTCATTAATTGCTGGAAGACTTCCCGGACGAACTGGAAACGATGTGAAAAATTACTGGAACTCCCGACTACGGCTAGATTCTCGAATTAAAAATCATAAATCTCCAGAATCTATAAAGACCACAATAATAAGGCCTCGACCACGAACCTTCTCCAAAAGTTTATATCCTTTGAACAAGAGAGCTACAATTTTAAAACCTTTTCAATTTGAAGAGAATTTTGGCCGCTCAACACAAGCATCACCAACTTCAGAGAATGAAATTGACTCACTGAAAACCATTTTAGATGACAAGGATAGTAGTACTGTTGAAAGAAGCACAAGTGATTCTTGTCATCTGGGGTTCGAGGAAGACCTCTTCACAAATTTTTGGGTTGAAGATATGGCAGAATCATCAAGAACATGTTTCTCATTTACTGAAGGAGAAGTAAGTAATGTAGACTTCTGTTTCAATATGGAACTCTGGAATCATCCAAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

247

Amino Acids

28.85

Weight (kDa)

8.95

Isoelectric Point (pI)

59.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 60 5.7e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 74 2.9e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 66 - 110 8.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 69 - 119 5.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 119
AccB1I GGYRCC 2 cut(s) 41, 108
AccBSI CCGCTC 1 cut(s) 489
AccI GTMKAC 1 cut(s) 699
AciI CCGC 1 cut(s) 487
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 484
AcsI RAATTY 2 cut(s) 478, 625
AcuI CTGAAG 3 cut(s) 200, 495, 699
AfaI GTAC 1 cut(s) 565
AfiI CCNNNNNNNGG 1 cut(s) 333
AflIII ACRYGT 1 cut(s) 662
AgsI TTSAA 7 cut(s) 136, 436, 467, 473, 572, 638, 712
AjnI CCWGG 2 cut(s) 44, 111
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AluBI AGCT 3 cut(s) 153, 247, 446
AluI AGCT 3 cut(s) 153, 247, 446
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 395, 484
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 2 cut(s) 478, 625
AseI ATTAAT 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 495
BanI GGYRCC 2 cut(s) 41, 108
BbsI GAAGAC 3 cut(s) 92, 286, 618
BbvI GCAGC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 350
BciT130I CCWGG 2 cut(s) 46, 113
BcnI CCSGG 1 cut(s) 288
BfaI CTAG 2 cut(s) 51, 338
BfmI CTRYAG 1 cut(s) 154
BfuAI ACCTGC 1 cut(s) 119
BisI GCNGC 2 cut(s) 154, 487
BlsI GCNGC 2 cut(s) 155, 488
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 3 cut(s) 46, 113, 288
BmiI GGNNCC 3 cut(s) 43, 110, 117
BmrFI CCNGG 3 cut(s) 46, 113, 288
BmsI GCATC 2 cut(s) 131, 509
BpiI GAAGAC 3 cut(s) 92, 286, 618
BpmI CTGGAG 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse1I ACTGG 2 cut(s) 301, 323
Bse3DI GCAATG 1 cut(s) 76
BseBI CCWGG 2 cut(s) 46, 113
BseGI GGATG 2 cut(s) 220, 730
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 301, 323
BseXI GCAGC 1 cut(s) 140
BshFI GGCC 2 cut(s) 397, 486
BshNI GGYRCC 2 cut(s) 41, 108
BsiSI CCGG 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 333
BsnI GGCC 2 cut(s) 397, 486
Bsp143I GATC 3 cut(s) 4, 64, 223
BspACI CCGC 1 cut(s) 487
BspANI GGCC 2 cut(s) 397, 486
BspCNI CTCAG 1 cut(s) 84
BspLI GGNNCC 3 cut(s) 43, 110, 117
BspMAI CTGCAG 1 cut(s) 158
BspMI ACCTGC 1 cut(s) 119
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 143
BspT107I GGYRCC 2 cut(s) 41, 108
BsrBI CCGCTC 1 cut(s) 489
BsrDI GCAATG 1 cut(s) 76
BsrI ACTGG 2 cut(s) 301, 323
BssMI GATC 3 cut(s) 4, 64, 223
Bst2UI CCWGG 2 cut(s) 46, 113
Bst4CI ACNGT 1 cut(s) 568
Bst6I CTCTTC 3 cut(s) 143, 468, 623
BstDEI CTNAG 2 cut(s) 71, 161
BstF5I GGATG 2 cut(s) 220, 730
BstKTI GATC 3 cut(s) 7, 67, 226
BstMBI GATC 3 cut(s) 4, 64, 223
BstMWI GCNNNNNNNGC 2 cut(s) 150, 244
BstNI CCWGG 2 cut(s) 46, 113
BstNSI RCATGY 1 cut(s) 666
BstSCI CCNGG 3 cut(s) 44, 111, 286
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 3 cut(s) 92, 286, 618
BsuRI GGCC 2 cut(s) 397, 486
BtsCI GGATG 2 cut(s) 220, 730
BtsIMutI CAGTG 1 cut(s) 530
BveI ACCTGC 1 cut(s) 119
CsiI ACCWGGT 1 cut(s) 111
Csp6I GTAC 1 cut(s) 564
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 3 cut(s) 82, 92, 663
CviQI GTAC 1 cut(s) 564
DdeI CTNAG 2 cut(s) 71, 161
DpnI GATC 3 cut(s) 6, 66, 225
DpnII GATC 3 cut(s) 4, 64, 223
DraI TTTAAA 1 cut(s) 456
EaeI YGGCCR 1 cut(s) 484
Eam1104I CTCTTC 3 cut(s) 143, 468, 623
EarI CTCTTC 3 cut(s) 143, 468, 623
Eco147I AGGCCT 1 cut(s) 397
Eco57I CTGAAG 3 cut(s) 200, 495, 699
EcoRII CCWGG 2 cut(s) 44, 111
FaeI CATG 3 cut(s) 85, 95, 666
FaiI YATR 8 cut(s) 83, 93, 360, 377, 427, 644, 664, 716
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 574, 606
FatI CATG 3 cut(s) 81, 91, 662
FblI GTMKAC 1 cut(s) 699
Fnu4HI GCNGC 2 cut(s) 154, 487
FokI GGATG 2 cut(s) 227, 717
Fsp4HI GCNGC 2 cut(s) 154, 487
FspBI CTAG 2 cut(s) 51, 338
GluI GCNGC 2 cut(s) 154, 487
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 2 cut(s) 397, 486
HapII CCGG 1 cut(s) 288
Hin1II CATG 3 cut(s) 85, 95, 666
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 7 cut(s) 88, 341, 371, 527, 587, 650, 727
HpaII CCGG 1 cut(s) 288
HphI GGTGA 1 cut(s) 495
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 2 cut(s) 180, 514
Hpy188III TCNNGA 5 cut(s) 327, 345, 368, 657, 724
Hpy8I GTNNAC 1 cut(s) 700
HpyAV CCTTC 3 cut(s) 129, 421, 674
HpyCH4III ACNGT 1 cut(s) 568
HpyCH4V TGCA 3 cut(s) 81, 144, 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 244
HpyF3I CTNAG 2 cut(s) 71, 161
Hsp92II CATG 3 cut(s) 85, 95, 666
Kzo9I GATC 3 cut(s) 4, 64, 223
LguI GCTCTTC 1 cut(s) 143
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 2 cut(s) 131, 509
MabI ACCWGGT 1 cut(s) 111
MaeI CTAG 2 cut(s) 51, 338
MaeIII GTNAC 1 cut(s) 14
MalI GATC 3 cut(s) 6, 66, 225
MbiI CCGCTC 1 cut(s) 489
MboI GATC 3 cut(s) 4, 64, 223
MluCI AATT 8 cut(s) 270, 313, 348, 450, 467, 478, 522, 625
MlyI GAGTC 2 cut(s) 82, 521
MnlI CCTC 6 cut(s) 49, 191, 205, 408, 601, 626
MseI TTAA 3 cut(s) 269, 351, 455
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 3 cut(s) 46, 113, 288
MvaI CCWGG 2 cut(s) 46, 113
MwoI GCNNNNNNNGC 2 cut(s) 150, 244
NciI CCSGG 1 cut(s) 288
NdeII GATC 3 cut(s) 4, 64, 223
NlaIII CATG 3 cut(s) 85, 95, 666
NlaIV GGNNCC 3 cut(s) 43, 110, 117
NspI RCATGY 1 cut(s) 666
PceI AGGCCT 1 cut(s) 397
PciI ACATGT 1 cut(s) 662
PciSI GCTCTTC 1 cut(s) 143
PfeI GAWTC 5 cut(s) 341, 371, 587, 650, 727
PfoI TCCNGGA 1 cut(s) 286
PkrI GCNGC 2 cut(s) 155, 488
PleI GAGTC 2 cut(s) 82, 521
PpsI GAGTC 2 cut(s) 82, 521
PscI ACATGT 1 cut(s) 662
PshBI ATTAAT 1 cut(s) 269
Psp6I CCWGG 2 cut(s) 44, 111
PspGI CCWGG 2 cut(s) 44, 111
PspN4I GGNNCC 3 cut(s) 43, 110, 117
PstI CTGCAG 1 cut(s) 158
RsaI GTAC 1 cut(s) 565
RsaNI GTAC 1 cut(s) 564
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 3 cut(s) 269, 351, 455
SatI GCNGC 2 cut(s) 154, 487
Sau3AI GATC 3 cut(s) 4, 64, 223
ScaI AGTACT 1 cut(s) 565
SchI GAGTC 2 cut(s) 82, 521
ScrFI CCNGG 3 cut(s) 46, 113, 288
SexAI ACCWGGT 1 cut(s) 111
SfaNI GCATC 2 cut(s) 131, 509
SfcI CTRYAG 1 cut(s) 154
Sse9I AATT 8 cut(s) 270, 313, 348, 450, 467, 478, 522, 625
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 1 cut(s) 487
SspI AATATT 1 cut(s) 231
SspMI CTAG 2 cut(s) 51, 338
StuI AGGCCT 1 cut(s) 397
StyD4I CCNGG 3 cut(s) 44, 111, 286
TaaI ACNGT 1 cut(s) 568
TaqI TCGA 3 cut(s) 346, 400, 606
TasI AATT 8 cut(s) 270, 313, 348, 450, 467, 478, 522, 625
TatI WGTACW 1 cut(s) 563
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 5 cut(s) 341, 371, 587, 650, 727
Tru1I TTAA 3 cut(s) 269, 351, 455
Tru9I TTAA 3 cut(s) 269, 351, 455
TscAI CASTG 1 cut(s) 537
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 3 cut(s) 98, 231, 534
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 1 cut(s) 537
VspI ATTAAT 1 cut(s) 269
XapI RAATTY 2 cut(s) 478, 625
XceI RCATGY 1 cut(s) 666
XmiI GTMKAC 1 cut(s) 699
XspI CTAG 2 cut(s) 51, 338
ZrmI AGTACT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.