RLG00000001168
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000402
Physical Location & Seq
Reverse (-)
11261757 .. 11262853
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001168

Sequence Viewer

Length: 387 bp
ATGATGGATCAGTCGGGTTTGAGAAAAGGTGCATGGACCATACAAGAAGACAATCTTCTGAGGCAGTGCATTGCAAAGCATGGAGAAGGAAGATGGCGCCTGATTCCTCCAGCTGCAGGTCAAGGTTTAATCGGAGACCAAAGTCAGTTAAAAAAGAACATTAGCATGGCTTTACCAACATCATCAGCATCACCAACATCACCAATACAGCAGGAAATTGATTGGTTGCGAGCCTTTTTAGAGGAGGAGGAGAGTATTCGAACCACAACCTGTTTTAGTTTGAGCCCTGAAGGAATATTTATTGAAGACCATATTCAATCAGAAAACAGCATTAGCTGCAGGGCTTTACCAACATCAACAGCATTACAGGATCAACTTGATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

129

Amino Acids

14.27

Weight (kDa)

4.81

Isoelectric Point (pI)

83.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 9 - 45 2.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 96
AclWI GGATC 2 cut(s) 15, 378
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 305, 317
AluBI AGCT 2 cut(s) 113, 336
AluI AGCT 2 cut(s) 113, 336
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 2 cut(s) 15, 378
ApeKI GCWGC 2 cut(s) 113, 336
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 36
AsuHPI GGTGA 2 cut(s) 183, 192
AsuII TTCGAA 1 cut(s) 259
AvaII GGWCC 1 cut(s) 36
BanI GGYRCC 1 cut(s) 96
BanII GRGCYC 1 cut(s) 287
BbsI GAAGAC 2 cut(s) 54, 312
BbvI GCAGC 2 cut(s) 100, 323
BccI CCATC 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 129
BfmI CTRYAG 2 cut(s) 114, 337
BfoI RGCGCY 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 107
BisI GCNGC 2 cut(s) 114, 337
BlsI GCNGC 2 cut(s) 115, 338
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 98
BmsI GCATC 1 cut(s) 197
BoxI GACNNNNGTC 1 cut(s) 141
BpiI GAAGAC 2 cut(s) 54, 312
BpmI CTGGAG 1 cut(s) 93
Bpu14I TTCGAA 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 50
BseRI GAGGAG 3 cut(s) 257, 260, 263
BseXI GCAGC 2 cut(s) 100, 323
BshNI GGYRCC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 129
Bso31I GGTCTC 1 cut(s) 129
Bsp119I TTCGAA 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 2 cut(s) 7, 370
BspCNI CTCAG 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 98
BspMAI CTGCAG 2 cut(s) 118, 341
BspMI ACCTGC 1 cut(s) 107
BspPI GGATC 2 cut(s) 15, 378
BspT104I TTCGAA 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 96
BspTNI GGTCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 69
BssMI GATC 2 cut(s) 7, 370
BssNI GRCGYC 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 97
BstAPI GCANNNNNTGC 1 cut(s) 336
BstBI TTCGAA 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 2 cut(s) 10, 373
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 2 cut(s) 7, 370
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstPAI GACNNNNGTC 1 cut(s) 141
BstSFI CTRYAG 2 cut(s) 114, 337
BstV1I GCAGC 2 cut(s) 100, 323
BstV2I GAAGAC 2 cut(s) 54, 312
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 71
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 231
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 36
CviAII CATG 3 cut(s) 33, 80, 166
CviJI RGCY 6 cut(s) 113, 170, 233, 285, 336, 344
CviKI_1 RGCY 6 cut(s) 113, 170, 233, 285, 336, 344
DdeI CTNAG 1 cut(s) 59
DinI GGCGCC 1 cut(s) 98
DpnI GATC 2 cut(s) 9, 372
DpnII GATC 2 cut(s) 7, 370
Eco24I GRGCYC 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 287
EgeI GGCGCC 1 cut(s) 98
EheI GGCGCC 1 cut(s) 98
FaeI CATG 3 cut(s) 36, 83, 169
FaiI YATR 5 cut(s) 34, 41, 81, 167, 312
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 3 cut(s) 32, 79, 165
Fnu4HI GCNGC 2 cut(s) 114, 337
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 2 cut(s) 114, 337
GlaI GCGC 1 cut(s) 98
GluI GCNGC 2 cut(s) 114, 337
GsuI CTGGAG 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 100
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 97
Hin1II CATG 3 cut(s) 36, 83, 169
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 1 cut(s) 103
HphI GGTGA 2 cut(s) 183, 192
Hpy188I TCNGA 3 cut(s) 60, 134, 322
HpyAV CCTTC 2 cut(s) 80, 284
HpyCH4V TGCA 5 cut(s) 32, 69, 74, 116, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpyF3I CTNAG 1 cut(s) 59
Hsp92I GRCGYC 1 cut(s) 97
Hsp92II CATG 3 cut(s) 36, 83, 169
HspAI GCGC 1 cut(s) 97
KasI GGCGCC 1 cut(s) 96
Kzo9I GATC 2 cut(s) 7, 370
LpnPI CCDG 8 cut(s) 102, 113, 123, 197, 283, 300, 325, 353
Lsp1109I GCAGC 2 cut(s) 100, 323
LweI GCATC 1 cut(s) 197
MalI GATC 2 cut(s) 9, 372
MboI GATC 2 cut(s) 7, 370
MboII GAAGA 4 cut(s) 47, 59, 102, 317
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 1 cut(s) 216
Mly113I GGCGCC 1 cut(s) 97
MnlI CCTC 5 cut(s) 54, 117, 235, 238, 241
MseI TTAA 2 cut(s) 128, 149
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 336
NarI GGCGCC 1 cut(s) 97
NdeII GATC 2 cut(s) 7, 370
NlaIII CATG 3 cut(s) 36, 83, 169
NlaIV GGNNCC 1 cut(s) 98
NspV TTCGAA 1 cut(s) 259
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 2 cut(s) 115, 338
PluTI GGCGCC 1 cut(s) 100
PshAI GACNNNNGTC 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 36
PstI CTGCAG 2 cut(s) 118, 341
PvuII CAGCTG 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 2 cut(s) 128, 149
SatI GCNGC 2 cut(s) 114, 337
Sau3AI GATC 2 cut(s) 7, 370
Sau96I GGNCC 1 cut(s) 36
SduI GDGCHC 1 cut(s) 287
SetI ASST 6 cut(s) 31, 115, 121, 127, 272, 338
SfaNI GCATC 1 cut(s) 197
SfcI CTRYAG 2 cut(s) 114, 337
SfoI GGCGCC 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 259
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 1 cut(s) 216
SspDI GGCGCC 1 cut(s) 96
SspI AATATT 1 cut(s) 297
TaqI TCGA 1 cut(s) 259
TasI AATT 1 cut(s) 216
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 2 cut(s) 128, 149
Tru9I TTAA 2 cut(s) 128, 149
TscAI CASTG 1 cut(s) 71
TseI GCWGC 2 cut(s) 113, 336
TspRI CASTG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.