Prupe.3G163300_v2.0.a1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000402
Physical Location & Seq
Reverse (-)
18253815 .. 18256025
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G163300.1

Sequence Viewer

Length: 738 bp
ATGGGGGGAAATAACTTGGATGTGAAAAAAGGAGCTTGGACTAAAGAGGAAGATGCTCTTCTGAGCAAGTGCATGGAGAATCATGGAGAAGGAAAGTGGCACGAGGTTCCTTACAAAGCAGGCTTAAACAGATGCAGGAAGAGCTGTAGACTAAGGTGGTTGAACTATGTGAAGCCAAATATCAAGAGAGGAGAGTTTACAGAGGATGAAGTAGATCTAATAATTAGGCTTCACAAGCTTTTAGGAAACAGGTGGGCACTGATTGCTGGAAGACTTCCAGGAAGGACATCGAACGGTGTGAAAAATTATTGGAACACCCGACGGCGGACGAATTCTCTCCTGAAAACGACTACGAAAGAAAAATTCCAAGAAACAATAAAGCCCATCGTCACAAGGCCTCAACCGCGAAGTTTCACCAAAAGTTCAAATTGTTCGAGTTTTGAAGAACCAGTTTTGGACCATACTCAACTAGAAGAAAATTTTAGTACGCCATCACAAACATCACCATCAACAAGGATTGGAAATGATTGGTGGGATACCTTTTTAGATGACAAGGATGCTACTGAAACAGCTACAGGTTCTGGTCCTGGGTTTGATGAAGAACTGCTCACGAGTTTTTGGGTTGATGATGATATGCCACAATCGGCAAGAACATGCATCAATTTTTCTGAAGAAGAACTGAGTATAAGTGATTTCTCTTTTAACTTGGACCTTTGGAATCATTCAAAAGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

246

Amino Acids

28.21

Weight (kDa)

5.84

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 148
AccII CGCG 1 cut(s) 406
AciI CCGC 2 cut(s) 325, 404
AcsI RAATTY 3 cut(s) 331, 362, 478
AcuI CTGAAG 1 cut(s) 690
AfaI GTAC 1 cut(s) 487
AfiI CCNNNNNNNGG 1 cut(s) 324
AgsI TTSAA 4 cut(s) 163, 426, 443, 726
AjnI CCWGG 2 cut(s) 277, 586
AluBI AGCT 4 cut(s) 35, 144, 238, 572
AluI AGCT 4 cut(s) 35, 144, 238, 572
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 1 cut(s) 395
ApoI RAATTY 3 cut(s) 331, 362, 478
AspS9I GGNCC 3 cut(s) 457, 584, 709
AsuHPI GGTGA 2 cut(s) 406, 495
AvaII GGWCC 3 cut(s) 457, 584, 709
BaeGI GKGCMC 1 cut(s) 259
BauI CACGAG 2 cut(s) 101, 610
BbsI GAAGAC 1 cut(s) 277
BccI CCATC 3 cut(s) 392, 499, 514
BceAI ACGGC 1 cut(s) 338
BciT130I CCWGG 2 cut(s) 279, 588
BciVI GTATCC 1 cut(s) 529
BfaI CTAG 1 cut(s) 470
BfmI CTRYAG 2 cut(s) 145, 573
BfuI GTATCC 1 cut(s) 529
BglII AGATCT 1 cut(s) 214
Bme1390I CCNGG 2 cut(s) 279, 588
Bme18I GGWCC 3 cut(s) 457, 584, 709
BmgT120I GGNCC 3 cut(s) 457, 584, 709
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 2 cut(s) 279, 588
BmsI GCATC 4 cut(s) 43, 122, 547, 666
BpiI GAAGAC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 587
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse1I ACTGG 1 cut(s) 449
BseBI CCWGG 2 cut(s) 279, 588
BseDI CCNNGG 1 cut(s) 587
BseGI GGATG 3 cut(s) 25, 211, 562
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMII CTCAG 2 cut(s) 53, 671
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 1 cut(s) 204
BseSI GKGCMC 1 cut(s) 259
Bsh1236I CGCG 1 cut(s) 406
BshFI GGCC 1 cut(s) 397
BslI CCNNNNNNNGG 1 cut(s) 324
BsnI GGCC 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 2 cut(s) 325, 404
BspANI GGCC 1 cut(s) 397
BspCNI CTCAG 2 cut(s) 54, 672
BspFNI CGCG 1 cut(s) 406
BspLI GGNNCC 1 cut(s) 108
BspQI GCTCTTC 2 cut(s) 63, 134
BsrI ACTGG 1 cut(s) 449
BssECI CCNNGG 1 cut(s) 587
BssMI GATC 1 cut(s) 214
BssSI CACGAG 2 cut(s) 101, 610
Bst2BI CACGAG 2 cut(s) 101, 610
Bst2UI CCWGG 2 cut(s) 279, 588
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 2 cut(s) 63, 134
BstAPI GCANNNNNTGC 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 3 cut(s) 62, 152, 680
BstF5I GGATG 3 cut(s) 25, 211, 562
BstFNI CGCG 1 cut(s) 406
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 4 cut(s) 141, 235, 263, 403
BstNI CCWGG 2 cut(s) 279, 588
BstNSI RCATGY 1 cut(s) 657
BstSCI CCNGG 2 cut(s) 277, 586
BstSFI CTRYAG 2 cut(s) 145, 573
BstSLI GKGCMC 1 cut(s) 259
BstUI CGCG 1 cut(s) 406
BstV2I GAAGAC 1 cut(s) 277
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuI GTATCC 1 cut(s) 529
BsuRI GGCC 1 cut(s) 397
BtsCI GGATG 3 cut(s) 25, 211, 562
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 121
CaiI CAGNNNCTG 1 cut(s) 581
Cfr13I GGNCC 3 cut(s) 457, 584, 709
Csp6I GTAC 1 cut(s) 486
CviAII CATG 3 cut(s) 73, 83, 654
CviJI RGCY 9 cut(s) 35, 123, 144, 175, 229, 238, 382, 397, 572
CviKI_1 RGCY 9 cut(s) 35, 123, 144, 175, 229, 238, 382, 397, 572
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 3 cut(s) 62, 152, 680
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eam1104I CTCTTC 2 cut(s) 63, 134
EarI CTCTTC 2 cut(s) 63, 134
EciI GGCGGA 1 cut(s) 340
Eco147I AGGCCT 1 cut(s) 397
Eco47I GGWCC 3 cut(s) 457, 584, 709
Eco57I CTGAAG 1 cut(s) 690
EcoRI GAATTC 1 cut(s) 331
EcoRII CCWGG 2 cut(s) 277, 586
EcoT22I ATGCAT 1 cut(s) 659
FaeI CATG 3 cut(s) 76, 86, 657
FaiI YATR 7 cut(s) 74, 84, 168, 462, 635, 655, 686
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FatI CATG 3 cut(s) 72, 82, 653
FblI GTMKAC 1 cut(s) 148
FokI GGATG 3 cut(s) 32, 218, 569
FspBI CTAG 1 cut(s) 470
HaeIII GGCC 1 cut(s) 397
Hin1II CATG 3 cut(s) 76, 86, 657
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 2 cut(s) 79, 718
HphI GGTGA 2 cut(s) 406, 495
Hpy166II GTNNAC 2 cut(s) 149, 198
Hpy188I TCNGA 2 cut(s) 63, 670
Hpy188III TCNNGA 3 cut(s) 184, 340, 610
Hpy8I GTNNAC 2 cut(s) 149, 198
Hpy99I CGWCG 1 cut(s) 324
HpyAV CCTTC 2 cut(s) 83, 276
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 3 cut(s) 72, 135, 657
HpyF10VI GCNNNNNNNGC 4 cut(s) 141, 235, 263, 403
HpyF3I CTNAG 3 cut(s) 62, 152, 680
Hsp92II CATG 3 cut(s) 76, 86, 657
Kzo9I GATC 1 cut(s) 214
LguI GCTCTTC 2 cut(s) 63, 134
LmnI GCTCC 1 cut(s) 32
LweI GCATC 4 cut(s) 43, 122, 547, 666
MaeI CTAG 1 cut(s) 470
MaeIII GTNAC 1 cut(s) 388
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 9 cut(s) 50, 62, 151, 282, 455, 485, 611, 683, 686
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 7 cut(s) 222, 304, 331, 362, 427, 478, 661
MnlI CCTC 5 cut(s) 40, 97, 182, 196, 408
Mph1103I ATGCAT 1 cut(s) 659
MseI TTAA 2 cut(s) 125, 702
MspR9I CCNGG 2 cut(s) 279, 588
MvaI CCWGG 2 cut(s) 279, 588
MvnI CGCG 1 cut(s) 406
MwoI GCNNNNNNNGC 4 cut(s) 141, 235, 263, 403
NdeII GATC 1 cut(s) 214
NlaIII CATG 3 cut(s) 76, 86, 657
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 388
NsiI ATGCAT 1 cut(s) 659
NspI RCATGY 1 cut(s) 657
PceI AGGCCT 1 cut(s) 397
PciSI GCTCTTC 2 cut(s) 63, 134
PfeI GAWTC 2 cut(s) 79, 718
PfoI TCCNGGA 1 cut(s) 277
Psp6I CCWGG 2 cut(s) 277, 586
PspGI CCWGG 2 cut(s) 277, 586
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 3 cut(s) 457, 584, 709
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
SapI GCTCTTC 2 cut(s) 63, 134
SaqAI TTAA 2 cut(s) 125, 702
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 3 cut(s) 457, 584, 709
ScrFI CCNGG 2 cut(s) 279, 588
SduI GDGCHC 1 cut(s) 259
SfaNI GCATC 4 cut(s) 43, 122, 547, 666
SfcI CTRYAG 2 cut(s) 145, 573
SinI GGWCC 3 cut(s) 457, 584, 709
Sse9I AATT 7 cut(s) 222, 304, 331, 362, 427, 478, 661
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 2 cut(s) 325, 404
SspMI CTAG 1 cut(s) 470
StuI AGGCCT 1 cut(s) 397
StyD4I CCNGG 2 cut(s) 277, 586
TaaI ACNGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 290, 434
TasI AATT 7 cut(s) 222, 304, 331, 362, 427, 478, 661
TfiI GAWTC 2 cut(s) 79, 718
Tru1I TTAA 2 cut(s) 125, 702
Tru9I TTAA 2 cut(s) 125, 702
TscAI CASTG 1 cut(s) 264
TseFI GTSAC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 2 cut(s) 222, 612
TspRI CASTG 1 cut(s) 264
VpaK11BI GGWCC 3 cut(s) 457, 584, 709
XapI RAATTY 3 cut(s) 331, 362, 478
XceI RCATGY 1 cut(s) 657
XmiI GTMKAC 1 cut(s) 148
XspI CTAG 1 cut(s) 470
Zsp2I ATGCAT 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.