Prupe.3G163100_v2.0.a1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000402
Physical Location & Seq
Reverse (-)
18220455 .. 18222943
2489 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G163100.1

Sequence Viewer

Length: 720 bp
ATGGAGGGCTATAACTTGGGTGTGAGAAAAGGAGCTTGGACTAGAGAGGAAGATGATCTTTTGAGGCAGTGCATTGAGAATCATGGAGAAGGAAAGTGGCACCAAGTTCCTAACAAAGCAGGGTTGAACAGGTGCAGGAAGAGCTGTAGACTAAGGTGGATGAACTATTTGAAGCCAAATATCAAGAGAGGAGAGTTTGCAGAGGATGAAGTAGATCTAATCATTAGGCTTCACAAGCTTTTAGGAAACAGGTGGTCATTGATTGCTGGAAGGCTTCCAGGAAGGACAGCGAATGATGTGAAAAATTATTGGAACACTCGACTGCGGACGGATTCTCGCCTGAAAAAGGTGAAAGATAAACCCCAAGAAACAATAAAGACCATCGTAATAAGACCTCAACCCCGAAGCTTCATCAAGAGTTCAAATTGTTTGAGCAGTAAAGAACCAATTTTGGATCATATTCAAACAGTCGAGAATTTTAGTACGCCGTCACAAACATCACCATCAACAAAGAATGGAAATGATTGGTGGGAAACCTTTTTAGATGACGAGGATGTTTTTGAAAGAGCTACATGCTATGGTCTAGCATTAGAGGAAGAAGAGTTCACAAGTTTTTGGGTTGATGATATGCCACAATCGAAAAGACAGTGTACCAATGTTTCAGAAGAAGGACTAGGTAGAGGTGATTTCTCTTTTAACGTGGACTTTTGGAATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

240

Amino Acids

27.94

Weight (kDa)

7.62

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 148
AciI CCGC 1 cut(s) 325
AclWI GGATC 1 cut(s) 462
AcsI RAATTY 1 cut(s) 475
AfaI GTAC 2 cut(s) 484, 652
AfiI CCNNNNNNNGG 1 cut(s) 346
AgsI TTSAA 5 cut(s) 127, 172, 423, 464, 563
AjnI CCWGG 1 cut(s) 277
AjuI GAANNNNNNNTTGG 2 cut(s) 19, 51
AloI GAACNNNNNNTCC 2 cut(s) 587, 619
AluBI AGCT 5 cut(s) 35, 144, 238, 408, 569
AluI AGCT 5 cut(s) 35, 144, 238, 408, 569
AlwI GGATC 1 cut(s) 462
ApoI RAATTY 1 cut(s) 475
AsuHPI GGTGA 3 cut(s) 361, 492, 695
BanI GGYRCC 1 cut(s) 99
BccI CCATC 2 cut(s) 389, 511
BceAI ACGGC 1 cut(s) 472
BciT130I CCWGG 1 cut(s) 279
BfaI CTAG 3 cut(s) 42, 584, 674
BfmI CTRYAG 1 cut(s) 145
BglII AGATCT 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 346
BseBI CCWGG 1 cut(s) 279
BseGI GGATG 3 cut(s) 165, 211, 559
BseLI CCNNNNNNNGG 1 cut(s) 346
BseRI GAGGAG 1 cut(s) 204
BsgI GTGCAG 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 346
Bsp143I GATC 3 cut(s) 55, 214, 454
BspACI CCGC 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 101
BspPI GGATC 1 cut(s) 462
BspQI GCTCTTC 1 cut(s) 134
BspT107I GGYRCC 1 cut(s) 99
BssMI GATC 3 cut(s) 55, 214, 454
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 2 cut(s) 469, 648
Bst6I CTCTTC 2 cut(s) 134, 594
BstDEI CTNAG 1 cut(s) 152
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 3 cut(s) 165, 211, 559
BstKTI GATC 3 cut(s) 58, 217, 457
BstMBI GATC 3 cut(s) 55, 214, 454
BstMWI GCNNNNNNNGC 2 cut(s) 141, 235
BstNI CCWGG 1 cut(s) 279
BstNSI RCATGY 1 cut(s) 576
BstSCI CCNGG 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BtsCI GGATG 3 cut(s) 165, 211, 559
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 2 cut(s) 74, 653
Csp6I GTAC 2 cut(s) 483, 651
CviAII CATG 2 cut(s) 83, 573
CviJI RGCY 9 cut(s) 9, 35, 144, 175, 229, 238, 274, 408, 569
CviKI_1 RGCY 9 cut(s) 9, 35, 144, 175, 229, 238, 274, 408, 569
CviQI GTAC 2 cut(s) 483, 651
DdeI CTNAG 1 cut(s) 152
DpnI GATC 3 cut(s) 57, 216, 456
DpnII GATC 3 cut(s) 55, 214, 454
Eam1104I CTCTTC 2 cut(s) 134, 594
EarI CTCTTC 2 cut(s) 134, 594
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 277
FaeI CATG 2 cut(s) 86, 576
FaiI YATR 6 cut(s) 12, 84, 459, 574, 579, 629
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FatI CATG 2 cut(s) 82, 572
FblI GTMKAC 1 cut(s) 148
FokI GGATG 3 cut(s) 172, 218, 566
FspBI CTAG 3 cut(s) 42, 584, 674
Hin1II CATG 2 cut(s) 86, 576
HindIII AAGCTT 2 cut(s) 236, 406
HinfI GANTC 3 cut(s) 79, 332, 712
HphI GGTGA 3 cut(s) 361, 492, 695
Hpy166II GTNNAC 4 cut(s) 149, 606, 651, 703
Hpy188I TCNGA 1 cut(s) 664
Hpy188III TCNNGA 3 cut(s) 184, 415, 472
Hpy8I GTNNAC 4 cut(s) 149, 606, 651, 703
HpyAV CCTTC 4 cut(s) 83, 264, 276, 662
HpyCH4III ACNGT 2 cut(s) 469, 648
HpyCH4IV ACGT 1 cut(s) 699
HpyCH4V TGCA 3 cut(s) 72, 135, 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 235
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 699
Hsp92II CATG 2 cut(s) 86, 576
Kzo9I GATC 3 cut(s) 55, 214, 454
LguI GCTCTTC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 8 cut(s) 105, 115, 121, 235, 252, 264, 291, 353
MaeI CTAG 3 cut(s) 42, 584, 674
MaeII ACGT 1 cut(s) 699
MaeIII GTNAC 1 cut(s) 489
MalI GATC 3 cut(s) 57, 216, 456
MboI GATC 3 cut(s) 55, 214, 454
MboII GAAGA 5 cut(s) 62, 151, 608, 611, 677
MflI RGATCY 1 cut(s) 214
MluCI AATT 4 cut(s) 304, 424, 447, 475
MnlI CCTC 8 cut(s) 40, 57, 182, 196, 405, 544, 586, 674
MseI TTAA 2 cut(s) 696, 718
MspR9I CCNGG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 141, 235
NdeII GATC 3 cut(s) 55, 214, 454
NlaIII CATG 2 cut(s) 86, 576
NlaIV GGNNCC 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 489
NspI RCATGY 1 cut(s) 576
PciSI GCTCTTC 1 cut(s) 134
PfeI GAWTC 3 cut(s) 79, 332, 712
PfoI TCCNGGA 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 2 cut(s) 484, 652
RsaNI GTAC 2 cut(s) 483, 651
SapI GCTCTTC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 696, 718
Sau3AI GATC 3 cut(s) 55, 214, 454
ScrFI CCNGG 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 145
Sse9I AATT 4 cut(s) 304, 424, 447, 475
SsiI CCGC 1 cut(s) 325
SspMI CTAG 3 cut(s) 42, 584, 674
StyD4I CCNGG 1 cut(s) 277
TaaI ACNGT 2 cut(s) 469, 648
TaiI ACGT 1 cut(s) 702
TaqI TCGA 3 cut(s) 319, 471, 638
TasI AATT 4 cut(s) 304, 424, 447, 475
TfiI GAWTC 3 cut(s) 79, 332, 712
Tru1I TTAA 2 cut(s) 696, 718
Tru9I TTAA 2 cut(s) 696, 718
TscAI CASTG 2 cut(s) 74, 653
TseFI GTSAC 1 cut(s) 489
Tsp45I GTSAC 1 cut(s) 489
TspDTI ATGAA 3 cut(s) 176, 222, 400
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 2 cut(s) 74, 653
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 1 cut(s) 475
XceI RCATGY 1 cut(s) 576
XmiI GTMKAC 1 cut(s) 148
XspI CTAG 3 cut(s) 42, 584, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.