Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 430 |
| Acc36I | ACCTGC | 1 cut(s) | 430 |
| AccI | GTMKAC | 1 cut(s) | 400 |
| AgsI | TTSAA | 5 cut(s) | 139, 148, 432, 443, 602 |
| AjnI | CCWGG | 1 cut(s) | 253 |
| AluBI | AGCT | 1 cut(s) | 214 |
| AluI | AGCT | 1 cut(s) | 214 |
| Alw21I | GWGCWC | 1 cut(s) | 295 |
| Alw26I | GTCTC | 2 cut(s) | 162, 300 |
| AoxI | GGCC | 1 cut(s) | 555 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 299, 331 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 457 |
| AspS9I | GGNCC | 2 cut(s) | 15, 607 |
| AsuHPI | GGTGA | 2 cut(s) | 382, 465 |
| AvaII | GGWCC | 2 cut(s) | 15, 607 |
| Bbv12I | GWGCWC | 1 cut(s) | 295 |
| BccI | CCATC | 1 cut(s) | 66 |
| BciT130I | CCWGG | 1 cut(s) | 255 |
| BcoDI | GTCTC | 2 cut(s) | 162, 300 |
| BfaI | CTAG | 1 cut(s) | 515 |
| BfuAI | ACCTGC | 1 cut(s) | 430 |
| BlpI | GCTNAGC | 1 cut(s) | 294 |
| Bme1390I | CCNGG | 1 cut(s) | 255 |
| Bme18I | GGWCC | 2 cut(s) | 15, 607 |
| BmgT120I | GGNCC | 2 cut(s) | 15, 607 |
| BmiI | GGNNCC | 1 cut(s) | 84 |
| BmrFI | CCNGG | 1 cut(s) | 255 |
| BmsI | GCATC | 2 cut(s) | 98, 330 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 294 |
| BseBI | CCWGG | 1 cut(s) | 255 |
| BseMII | CTCAG | 2 cut(s) | 52, 308 |
| BseRI | GAGGAG | 1 cut(s) | 180 |
| BshFI | GGCC | 1 cut(s) | 557 |
| BsiHKAI | GWGCWC | 1 cut(s) | 295 |
| BsmAI | GTCTC | 2 cut(s) | 162, 300 |
| BsnI | GGCC | 1 cut(s) | 557 |
| Bsp1286I | GDGCHC | 1 cut(s) | 295 |
| Bsp143I | GATC | 1 cut(s) | 28 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 294 |
| BspANI | GGCC | 1 cut(s) | 557 |
| BspCNI | CTCAG | 2 cut(s) | 51, 307 |
| BspHI | TCATGA | 1 cut(s) | 324 |
| BspLI | GGNNCC | 1 cut(s) | 84 |
| BspMI | ACCTGC | 1 cut(s) | 430 |
| BssMI | GATC | 1 cut(s) | 28 |
| Bst2UI | CCWGG | 1 cut(s) | 255 |
| Bst4CI | ACNGT | 1 cut(s) | 364 |
| BstC8I | GCNNGC | 1 cut(s) | 97 |
| BstDEI | CTNAG | 2 cut(s) | 38, 294 |
| BstKTI | GATC | 1 cut(s) | 31 |
| BstMAI | GTCTC | 2 cut(s) | 162, 300 |
| BstMBI | GATC | 1 cut(s) | 28 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 211, 422 |
| BstNI | CCWGG | 1 cut(s) | 255 |
| BstSCI | CCNGG | 1 cut(s) | 253 |
| BsuRI | GGCC | 1 cut(s) | 557 |
| BveI | ACCTGC | 1 cut(s) | 430 |
| Cac8I | GCNNGC | 1 cut(s) | 97 |
| CciI | TCATGA | 1 cut(s) | 324 |
| Cfr13I | GGNCC | 2 cut(s) | 15, 607 |
| CviAII | CATG | 3 cut(s) | 12, 59, 325 |
| CviJI | RGCY | 6 cut(s) | 99, 151, 205, 214, 340, 557 |
| CviKI_1 | RGCY | 6 cut(s) | 99, 151, 205, 214, 340, 557 |
| DdeI | CTNAG | 2 cut(s) | 38, 294 |
| DpnI | GATC | 1 cut(s) | 30 |
| DpnII | GATC | 1 cut(s) | 28 |
| Eco47I | GGWCC | 2 cut(s) | 15, 607 |
| EcoRII | CCWGG | 1 cut(s) | 253 |
| FaeI | CATG | 3 cut(s) | 15, 62, 328 |
| FaiI | YATR | 6 cut(s) | 13, 60, 311, 326, 482, 572 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 18, 50 |
| FatI | CATG | 3 cut(s) | 11, 58, 324 |
| FblI | GTMKAC | 1 cut(s) | 400 |
| FspBI | CTAG | 1 cut(s) | 515 |
| HaeIII | GGCC | 1 cut(s) | 557 |
| Hin1II | CATG | 3 cut(s) | 15, 62, 328 |
| HindIII | AAGCTT | 1 cut(s) | 212 |
| HinfI | GANTC | 2 cut(s) | 8, 384 |
| HphI | GGTGA | 2 cut(s) | 382, 465 |
| Hpy166II | GTNNAC | 1 cut(s) | 401 |
| Hpy188I | TCNGA | 1 cut(s) | 210 |
| Hpy188III | TCNNGA | 3 cut(s) | 40, 160, 325 |
| Hpy8I | GTNNAC | 1 cut(s) | 401 |
| HpyAV | CCTTC | 2 cut(s) | 59, 294 |
| HpyCH4III | ACNGT | 1 cut(s) | 364 |
| HpyCH4V | TGCA | 3 cut(s) | 111, 176, 425 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 211, 422 |
| HpyF3I | CTNAG | 2 cut(s) | 38, 294 |
| Hsp92II | CATG | 3 cut(s) | 15, 62, 328 |
| Kzo9I | GATC | 1 cut(s) | 28 |
| LpnPI | CCDG | 7 cut(s) | 25, 81, 211, 240, 267, 435, 435 |
| LweI | GCATC | 2 cut(s) | 98, 330 |
| MaeI | CTAG | 1 cut(s) | 515 |
| MalI | GATC | 1 cut(s) | 30 |
| MboI | GATC | 1 cut(s) | 28 |
| MboII | GAAGA | 5 cut(s) | 38, 81, 270, 379, 641 |
| MhlI | GDGCHC | 1 cut(s) | 295 |
| MluCI | AATT | 4 cut(s) | 139, 237, 443, 580 |
| MnlI | CCTC | 9 cut(s) | 16, 123, 158, 172, 351, 384, 511, 541, 568 |
| MroXI | GAANNNNTTC | 1 cut(s) | 457 |
| MseI | TTAA | 4 cut(s) | 101, 194, 236, 410 |
| MspR9I | CCNGG | 1 cut(s) | 255 |
| MvaI | CCWGG | 1 cut(s) | 255 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 211, 422 |
| NdeII | GATC | 1 cut(s) | 28 |
| NlaIII | CATG | 3 cut(s) | 15, 62, 328 |
| NlaIV | GGNNCC | 1 cut(s) | 84 |
| PagI | TCATGA | 1 cut(s) | 324 |
| PaqCI | CACCTGC | 1 cut(s) | 430 |
| PdmI | GAANNNNTTC | 1 cut(s) | 457 |
| PfeI | GAWTC | 2 cut(s) | 8, 384 |
| PflFI | GACNNNGTC | 1 cut(s) | 185 |
| PfoI | TCCNGGA | 1 cut(s) | 253 |
| Psp6I | CCWGG | 1 cut(s) | 253 |
| PspGI | CCWGG | 1 cut(s) | 253 |
| PspN4I | GGNNCC | 1 cut(s) | 84 |
| PspPI | GGNCC | 2 cut(s) | 15, 607 |
| PsyI | GACNNNGTC | 1 cut(s) | 185 |
| SaqAI | TTAA | 4 cut(s) | 101, 194, 236, 410 |
| Sau3AI | GATC | 1 cut(s) | 28 |
| Sau96I | GGNCC | 2 cut(s) | 15, 607 |
| ScrFI | CCNGG | 1 cut(s) | 255 |
| SduI | GDGCHC | 1 cut(s) | 295 |
| SfaNI | GCATC | 2 cut(s) | 98, 330 |
| SinI | GGWCC | 2 cut(s) | 15, 607 |
| Sse9I | AATT | 4 cut(s) | 139, 237, 443, 580 |
| SspMI | CTAG | 1 cut(s) | 515 |
| StyD4I | CCNGG | 1 cut(s) | 253 |
| TaaI | ACNGT | 1 cut(s) | 364 |
| TaqI | TCGA | 2 cut(s) | 189, 376 |
| TasI | AATT | 4 cut(s) | 139, 237, 443, 580 |
| TfiI | GAWTC | 2 cut(s) | 8, 384 |
| Tru1I | TTAA | 4 cut(s) | 101, 194, 236, 410 |
| Tru9I | TTAA | 4 cut(s) | 101, 194, 236, 410 |
| TspDTI | ATGAA | 3 cut(s) | 341, 450, 504 |
| Tth111I | GACNNNGTC | 1 cut(s) | 185 |
| VpaK11BI | GGWCC | 2 cut(s) | 15, 607 |
| XmiI | GTMKAC | 1 cut(s) | 400 |
| XmnI | GAANNNNTTC | 1 cut(s) | 457 |
| XspI | CTAG | 1 cut(s) | 515 |