Rorug02G0202900
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000402
Physical Location & Seq
Forward (+)
18999080 .. 19001148
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0202900.1

Sequence Viewer

Length: 1341 bp
ATGGATGGTTCTTTGGCTGTTAAGTGCACTCATTCTGGACAAGGTTTCATGTTTTGTATTAATCAATATATGAGCTATGCTGATTTGTTTGAATACATTTGTCAACGGTTCAGTTTTTCTGCAACTGATGATAGCTGCTCTGGTATTGTGGATGAAGATGATTACCTCACTGACGCATTTAGGACTGAAGTTCAAAAGTCTTACTTATCGAATGAGTGGGCTAGTTTCATTCAATGTGTAGGACAAAAATTTTGTGGCGGTTTCCCCGAGTTTCGAGACAAGCTTAGAAAATATGATGTTGAAGTTGGGTTCAGCTTTGTGTTTATTAGAAATGATTGGGATAGAATTCATGCGGTTTGTTCCAATTGGGGAACCGAAGGATGTGATTGGAATGTCCGTGGTTATGTATCCCCTGCAAATGGATGCTTTATAATTGGTGAGTTGAACAATGTCCACTCTTGCAAAGGTGTTATTCGGAAGCAAAAACATGAGCTTTTGGGATCGAAAATTGTCAAGACATGTATTGAAGAGGACATTAGCTATAACTTATCATTGAAGCCGAGGGAAATTATCAGCAAGTTCAAGTCAGCTTATGGGTTTGATATATCATACAAGGTTGCTTGGAAAGCAAAGCAGAAGGCTAGGGAAATGATTTATGGTTCTGAGGCTGATTCGTTTAACAAGTTAACATGTTATAGGGAAGCTGTATTTGAGACTAACCCAGGATCTTCGTTTGTTTTGGAAGTTGATCTATCGAGCAATCGATTTCAGAGGCTTTTCCTAGCTTATGCAGGCTGCATTAAAGGCTATGAATTCTGTCTTCCTGTCTTGTTTGTCGATGGGACTTTTAAGAAGAGTGTCTTCAAGGGGCAGATACTTTGTGCAACTGGAAGGAATGGAAATCATGGTTTCTTTCCTCTTGCAATGTGTATCTATGATTTTGAGATTGATGCTAATTGGTCCTTTTTCTTCCAACACTTTAAGAGCTTGCTGGAACCTCAAGGGTCTTTTGTTTTGAAAGATGATGTTAAAAAGAAGTTTTTTGAGTTGGGCCGCACATTTTTCCCTGGATGTCGTTATGGAATTATGGCTAATAGTATAGCTGAATCTTTTAATGCTTGGTTTGCTGTTGAGCGTGAGATGCCAATATACACTATGCTTGATCAGACTCGGATTAAGGTGATGCAGATGATGGGTGAGAGGAGAGACGAGGCTCAACTTTGGACCTCGCAACTTACTCCTGTTATAGAGGGTCGTTTGAAAGAAGGTATGGAGAAAGCTTGCCGTTTCAATGTGCATTACTCTCATACTGTTAACGTTAGTGACCGAGGGGGTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

446

Amino Acids

51.19

Weight (kDa)

6.71

Isoelectric Point (pI)

25.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 78 - 145 7.9e-08 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
AciI CCGC 3 cut(s) 258, 353, 1054
AclI AACGTT 1 cut(s) 1317
AclWI GGATC 2 cut(s) 508, 733
AcsI RAATTY 3 cut(s) 248, 345, 812
AcuI CTGAAG 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 419
AflIII ACRYGT 2 cut(s) 518, 689
AjnI CCWGG 2 cut(s) 721, 1066
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 3 cut(s) 270, 707, 1200
Alw44I GTGCAC 1 cut(s) 25
AlwI GGATC 2 cut(s) 508, 733
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 1 cut(s) 1051
ApaLI GTGCAC 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 135, 795
ApoI RAATTY 3 cut(s) 248, 345, 812
ArsI GACNNNNNNTTYG 2 cut(s) 234, 266
AseI ATTAAT 1 cut(s) 60
AspS9I GGNCC 3 cut(s) 960, 1051, 1224
AsuHPI GGTGA 3 cut(s) 449, 1192, 1208
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 2 cut(s) 960, 1224
BaeGI GKGCMC 1 cut(s) 29
BbsI GAAGAC 2 cut(s) 812, 853
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 2 cut(s) 122, 782
BccI CCATC 2 cut(s) 833, 1186
BceAI ACGGC 1 cut(s) 1269
BciT130I CCWGG 2 cut(s) 723, 1068
BciVI GTATCC 1 cut(s) 418
BclI TGATCA 1 cut(s) 1162
BcoDI GTCTC 3 cut(s) 270, 707, 1200
BfaI CTAG 4 cut(s) 222, 642, 782, 1339
BfuI GTATCC 1 cut(s) 418
BisI GCNGC 3 cut(s) 136, 796, 1054
BlsI GCNGC 3 cut(s) 137, 797, 1055
Bme1390I CCNGG 2 cut(s) 723, 1068
Bme18I GGWCC 2 cut(s) 960, 1224
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 3 cut(s) 960, 1051, 1224
BmiI GGNNCC 2 cut(s) 373, 996
BmrFI CCNGG 2 cut(s) 723, 1068
BmsI GCATC 4 cut(s) 413, 940, 1131, 1173
BpiI GAAGAC 2 cut(s) 812, 853
BplI GAGNNNNNCTC 1 cut(s) 1320
BpuEI CTTGAG 1 cut(s) 984
Bsa29I ATCGAT 1 cut(s) 763
BsaJI CCNNGG 5 cut(s) 397, 560, 721, 1066, 1327
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse1I ACTGG 1 cut(s) 892
Bse3DI GCAATG 1 cut(s) 930
BseBI CCWGG 2 cut(s) 723, 1068
BseCI ATCGAT 1 cut(s) 763
BseDI CCNNGG 5 cut(s) 397, 560, 721, 1066, 1327
BseGI GGATG 5 cut(s) 10, 157, 386, 428, 1076
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMI GCAATG 1 cut(s) 930
BseMII CTCAG 1 cut(s) 654
BseNI ACTGG 1 cut(s) 892
BseRI GAGGAG 1 cut(s) 1216
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 2 cut(s) 122, 782
BshFI GGCC 1 cut(s) 1053
BshVI ATCGAT 1 cut(s) 763
BsiHKAI GWGCWC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 266
BslFI GGGAC 1 cut(s) 856
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 3 cut(s) 270, 707, 1200
BsmBI CGTCTC 1 cut(s) 1200
BsmFI GGGAC 1 cut(s) 856
BsnI GGCC 1 cut(s) 1053
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 4 cut(s) 500, 725, 748, 1162
BspACI CCGC 3 cut(s) 258, 353, 1054
BspANI GGCC 1 cut(s) 1053
BspCNI CTCAG 1 cut(s) 655
BspDI ATCGAT 1 cut(s) 763
BspLI GGNNCC 2 cut(s) 373, 996
BspPI GGATC 2 cut(s) 508, 733
BsrDI GCAATG 1 cut(s) 930
BsrI ACTGG 1 cut(s) 892
BssECI CCNNGG 5 cut(s) 397, 560, 721, 1066, 1327
BssMI GATC 4 cut(s) 500, 725, 748, 1162
Bst2UI CCWGG 2 cut(s) 723, 1068
Bst4CI ACNGT 2 cut(s) 108, 1312
Bst6I CTCTTC 2 cut(s) 522, 848
BstC8I GCNNGC 3 cut(s) 793, 989, 1282
BstDEI CTNAG 2 cut(s) 284, 663
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 5 cut(s) 10, 157, 386, 428, 1076
BstKTI GATC 4 cut(s) 503, 728, 751, 1165
BstMAI GTCTC 3 cut(s) 270, 707, 1200
BstMBI GATC 4 cut(s) 500, 725, 748, 1162
BstMWI GCNNNNNNNGC 4 cut(s) 626, 804, 1124, 1141
BstNI CCWGG 2 cut(s) 723, 1068
BstNSI RCATGY 2 cut(s) 522, 693
BstSCI CCNGG 2 cut(s) 721, 1066
BstSLI GKGCMC 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 122, 782
BstV2I GAAGAC 2 cut(s) 812, 853
BstX2I RGATCY 1 cut(s) 725
BstYI RGATCY 1 cut(s) 725
Bsu15I ATCGAT 1 cut(s) 763
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 1 cut(s) 1053
BsuTUI ATCGAT 1 cut(s) 763
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 5 cut(s) 10, 157, 386, 428, 1076
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 3 cut(s) 793, 989, 1282
Cfr13I GGNCC 3 cut(s) 960, 1051, 1224
ClaI ATCGAT 1 cut(s) 763
CseI GACGC 1 cut(s) 182
CviAII CATG 6 cut(s) 49, 350, 488, 519, 690, 905
DdeI CTNAG 2 cut(s) 284, 663
DpnI GATC 4 cut(s) 502, 727, 750, 1164
DpnII GATC 4 cut(s) 500, 725, 748, 1162
Eam1104I CTCTTC 2 cut(s) 522, 848
EarI CTCTTC 2 cut(s) 522, 848
Eco47I GGWCC 2 cut(s) 960, 1224
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 266
EcoRI GAATTC 2 cut(s) 345, 812
EcoRII CCWGG 2 cut(s) 721, 1066
Esp3I CGTCTC 1 cut(s) 1200
FaeI CATG 6 cut(s) 52, 353, 491, 522, 693, 908
FalI AAGNNNNNCTT 4 cut(s) 188, 220, 845, 877
FaqI GGGAC 1 cut(s) 856
FatI CATG 6 cut(s) 48, 349, 487, 518, 689, 904
FbaI TGATCA 1 cut(s) 1162
Fnu4HI GCNGC 3 cut(s) 136, 796, 1054
FokI GGATG 5 cut(s) 17, 164, 393, 435, 1083
Fsp4HI GCNGC 3 cut(s) 136, 796, 1054
FspBI CTAG 4 cut(s) 222, 642, 782, 1339
GluI GCNGC 3 cut(s) 136, 796, 1054
HaeIII GGCC 1 cut(s) 1053
HgaI GACGC 1 cut(s) 182
Hin1II CATG 6 cut(s) 52, 353, 491, 522, 693, 908
HincII GTYRAC 3 cut(s) 104, 687, 1315
HindII GTYRAC 3 cut(s) 104, 687, 1315
HindIII AAGCTT 2 cut(s) 281, 1278
HinfI GANTC 3 cut(s) 671, 1106, 1168
HpaI GTTAAC 2 cut(s) 687, 1315
HphI GGTGA 3 cut(s) 449, 1192, 1208
Hpy166II GTNNAC 5 cut(s) 27, 104, 454, 687, 1315
Hpy188I TCNGA 5 cut(s) 477, 664, 771, 1167, 1173
Hpy188III TCNNGA 3 cut(s) 36, 275, 514
Hpy8I GTNNAC 5 cut(s) 27, 104, 454, 687, 1315
HpyAV CCTTC 4 cut(s) 371, 631, 885, 1259
HpyCH4III ACNGT 2 cut(s) 108, 1312
HpyCH4IV ACGT 1 cut(s) 1317
HpyF10VI GCNNNNNNNGC 4 cut(s) 626, 804, 1124, 1141
HpyF3I CTNAG 2 cut(s) 284, 663
HpySE526I ACGT 1 cut(s) 1317
Hsp92II CATG 6 cut(s) 52, 353, 491, 522, 693, 908
Ksp22I TGATCA 1 cut(s) 1162
KspAI GTTAAC 2 cut(s) 687, 1315
Kzo9I GATC 4 cut(s) 500, 725, 748, 1162
Lsp1109I GCAGC 2 cut(s) 122, 782
LweI GCATC 4 cut(s) 413, 940, 1131, 1173
MaeI CTAG 4 cut(s) 222, 642, 782, 1339
MaeII ACGT 1 cut(s) 1317
MaeIII GTNAC 1 cut(s) 1322
MalI GATC 4 cut(s) 502, 727, 750, 1164
MboI GATC 4 cut(s) 500, 725, 748, 1162
MboII GAAGA 7 cut(s) 167, 539, 720, 812, 853, 865, 961
MfeI CAATTG 1 cut(s) 364
MflI RGATCY 1 cut(s) 725
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 9 cut(s) 248, 345, 364, 432, 507, 567, 812, 955, 1083
MlyI GAGTC 1 cut(s) 1162
MmeI TCCRAC 1 cut(s) 997
MspR9I CCNGG 2 cut(s) 723, 1068
MunI CAATTG 1 cut(s) 364
MvaI CCWGG 2 cut(s) 723, 1068
MwoI GCNNNNNNNGC 4 cut(s) 626, 804, 1124, 1141
NdeII GATC 4 cut(s) 500, 725, 748, 1162
NlaIII CATG 6 cut(s) 52, 353, 491, 522, 693, 908
NlaIV GGNNCC 2 cut(s) 373, 996
NmeAIII GCCGAG 1 cut(s) 585
NmuCI GTSAC 1 cut(s) 1322
NspI RCATGY 2 cut(s) 522, 693
PciI ACATGT 2 cut(s) 518, 689
PfeI GAWTC 2 cut(s) 671, 1106
PkrI GCNGC 3 cut(s) 137, 797, 1055
PleI GAGTC 1 cut(s) 1162
PpsI GAGTC 1 cut(s) 1162
PscI ACATGT 2 cut(s) 518, 689
PshBI ATTAAT 1 cut(s) 60
PsiI TTATAA 1 cut(s) 431
Psp1406I AACGTT 1 cut(s) 1317
Psp6I CCWGG 2 cut(s) 721, 1066
PspGI CCWGG 2 cut(s) 721, 1066
PspN4I GGNNCC 2 cut(s) 373, 996
PspPI GGNCC 3 cut(s) 960, 1051, 1224
PsuI RGATCY 1 cut(s) 725
SatI GCNGC 3 cut(s) 136, 796, 1054
Sau3AI GATC 4 cut(s) 500, 725, 748, 1162
Sau96I GGNCC 3 cut(s) 960, 1051, 1224
SchI GAGTC 1 cut(s) 1162
ScrFI CCNGG 2 cut(s) 723, 1068
SduI GDGCHC 1 cut(s) 29
SfaNI GCATC 4 cut(s) 413, 940, 1131, 1173
SinI GGWCC 2 cut(s) 960, 1224
SmlI CTYRAG 1 cut(s) 999
SmoI CTYRAG 1 cut(s) 999
Sse9I AATT 9 cut(s) 248, 345, 364, 432, 507, 567, 812, 955, 1083
SsiI CCGC 3 cut(s) 258, 353, 1054
SspMI CTAG 4 cut(s) 222, 642, 782, 1339
StyD4I CCNGG 2 cut(s) 721, 1066
TaaI ACNGT 2 cut(s) 108, 1312
TaiI ACGT 1 cut(s) 1320
TaqI TCGA 6 cut(s) 209, 274, 503, 755, 763, 837
TaqII GACCGA 1 cut(s) 1341
TasI AATT 9 cut(s) 248, 345, 364, 432, 507, 567, 812, 955, 1083
TauI GCSGC 1 cut(s) 1056
TfiI GAWTC 2 cut(s) 671, 1106
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 1322
TseI GCWGC 2 cut(s) 135, 795
Tsp45I GTSAC 1 cut(s) 1322
TspDTI ATGAA 5 cut(s) 37, 168, 217, 338, 825
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 1 cut(s) 175
VneI GTGCAC 1 cut(s) 25
VpaK11BI GGWCC 2 cut(s) 960, 1224
VspI ATTAAT 1 cut(s) 60
XapI RAATTY 3 cut(s) 248, 345, 812
XceI RCATGY 2 cut(s) 522, 693
XspI CTAG 4 cut(s) 222, 642, 782, 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.