Rh4CG210100
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000402
Physical Location & Seq
Forward (+)
43956052 .. 43958766
2715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG210100.1

Sequence Viewer

Length: 513 bp
ATGAGGTGGTTGAACTACCTGAAGCCAACCATCAAGAGAGGAGAATTTGAAGATGATGAAGTCGATCTGATGATTAAGCTTTATAAGCTTTTAGGAAACAGGTGGTCATTGATTGCTGGCCGACTTCCAGGAAGAACCTCAAATGATGTGAAAAACTATTGGAATGCTCGGCGAAGGAGAAATATGGATTTGAACATCAAAAAAGATAAATCTCGACAAATGACAAAGACCCCTATAATAAAGCCTCGACCACGGACCTTCACAAAAAGTTTACATATTCTGGGTGACAGAGCAGCAACCTCAAAAAATAGTAATATAAACATATCATTACCTCCAGTAAATGGACTTGATGAGTGGAAAATTGTACCAGTGGAACATGTCCCTACAAACTTATGGGTTCAAGATATGGCCTCAGTGACCGAAACATGTGTCAATGTTGCCGAACGAAGTTTCGAATCTGACCTTTGGCATTTTCTCCAAGAAGAGATGAGAGAACAAGATTCAGACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

170

Amino Acids

19.98

Weight (kDa)

9.41

Isoelectric Point (pI)

58.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 55 1e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 58 5.2e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AccB7I CCANNNNNTGG 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 1 cut(s) 341
AflIII ACRYGT 2 cut(s) 376, 425
AgsI TTSAA 4 cut(s) 13, 50, 193, 401
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 2 cut(s) 79, 88
AluI AGCT 2 cut(s) 79, 88
AoxI GGCC 2 cut(s) 118, 408
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 44
ArsI GACNNNNNNTTYG 2 cut(s) 414, 446
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 453
AvaII GGWCC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 305
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 129
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 318
Bpu14I TTCGAA 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 251
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse1I ACTGG 2 cut(s) 335, 368
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 2 cut(s) 335, 368
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 305
BshFI GGCC 2 cut(s) 120, 410
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 2 cut(s) 120, 410
Bsp119I TTCGAA 1 cut(s) 453
Bsp143I GATC 1 cut(s) 64
BspANI GGCC 2 cut(s) 120, 410
BspCNI CTCAG 1 cut(s) 425
BspT104I TTCGAA 1 cut(s) 453
BsrI ACTGG 2 cut(s) 335, 368
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 477
BstBI TTCGAA 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 412
BstDSI CCRYGG 1 cut(s) 251
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 2 cut(s) 380, 429
BstSCI CCNGG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 305
BsuRI GGCC 2 cut(s) 120, 410
BtgI CCRYGG 1 cut(s) 251
BtsIMutI CAGTG 2 cut(s) 375, 420
Cac8I GCNNGC 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 365
CviAII CATG 2 cut(s) 377, 426
CviJI RGCY 6 cut(s) 25, 79, 88, 120, 244, 410
CviKI_1 RGCY 6 cut(s) 25, 79, 88, 120, 244, 410
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 1 cut(s) 412
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 127
FaeI CATG 2 cut(s) 380, 429
FaqI GGGAC 1 cut(s) 365
FatI CATG 2 cut(s) 376, 425
Fnu4HI GCNGC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 2 cut(s) 120, 410
Hin1II CATG 2 cut(s) 380, 429
HindIII AAGCTT 2 cut(s) 77, 86
HinfI GANTC 2 cut(s) 455, 500
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 4 cut(s) 69, 460, 505, 512
Hpy188III TCNNGA 3 cut(s) 34, 213, 401
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 168, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 1 cut(s) 412
Hsp92II CATG 2 cut(s) 380, 429
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 8 cut(s) 32, 85, 102, 114, 141, 266, 348, 381
Lsp1109I GCAGC 1 cut(s) 305
MaeIII GTNAC 2 cut(s) 284, 415
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 3 cut(s) 62, 144, 494
MluCI AATT 2 cut(s) 44, 360
MnlI CCTC 6 cut(s) 32, 148, 255, 310, 342, 421
MseI TTAA 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 1 cut(s) 64
NlaIII CATG 2 cut(s) 380, 429
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 2 cut(s) 284, 415
NspI RCATGY 2 cut(s) 380, 429
NspV TTCGAA 1 cut(s) 453
PciI ACATGT 2 cut(s) 376, 425
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 2 cut(s) 455, 500
PflMI CCANNNNNTGG 1 cut(s) 341
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 1 cut(s) 295
PscI ACATGT 2 cut(s) 376, 425
PsiI TTATAA 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspPI GGNCC 1 cut(s) 255
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 1 cut(s) 255
ScrFI CCNGG 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 453
SinI GGWCC 1 cut(s) 255
Sse9I AATT 2 cut(s) 44, 360
StyD4I CCNGG 1 cut(s) 127
TaqI TCGA 4 cut(s) 63, 214, 247, 453
TaqII GACCGA 1 cut(s) 434
TasI AATT 2 cut(s) 44, 360
TfiI GAWTC 2 cut(s) 455, 500
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 2 cut(s) 375, 420
TseFI GTSAC 2 cut(s) 284, 415
TseI GCWGC 1 cut(s) 293
Tsp45I GTSAC 2 cut(s) 284, 415
TspDTI ATGAA 1 cut(s) 72
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 2 cut(s) 375, 420
Van91I CCANNNNNTGG 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 255
XapI RAATTY 1 cut(s) 44
XceI RCATGY 2 cut(s) 380, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.