FvH4_1g22040
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000402
Physical Location & Seq
Reverse (-)
13983010 .. 13984914
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22040.t1

Sequence Viewer

Length: 495 bp
ATGGAGGTGAGAAAAGGTTCATGGACCAAAGAGGAAGATCATCTTCTGAGGAACTACATTGAGAAACATGGTGAGGGAAGATGGCACAAGGTTCCTCTTCAAGCAGGCTTAAACAGATGCAGAAAGAGCTGCCGGATGAGGTGGTTGAATTATTTGAAGCCAAACATCAAGAGAGGAGACTTTGAAGAGGATGAAGTCGATCTAATGATCAGGCTTCGGAAGCTTTTGGGAAACAGGCAAGTCGGGGAAGCAGCTGGAGGGCGCGCCTCTGTTGGGGTGGAGGCGCGCCCTCACCGGCGCCGAAATAGTTCATCGTCAACATCACCACCTATGGAGAATGGAATTGATGACTGGAAAACTCTACTACATGAAGATGTCCTGACAAACTTTTGGGTTGAGGATACAGCCTCAATGTCAAGTATAGGTGTCAATTCTACTGAGAAAGGTTTTGAAATGGACCTGTGGCAGTTTTTACAAGAAGAAACAAGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

165

Amino Acids

19.13

Weight (kDa)

7.83

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 52 1.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 8 - 66 1.6e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 297
AccII CGCG 2 cut(s) 264, 286
AcyI GRCGYC 1 cut(s) 298
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 5 cut(s) 101, 148, 157, 185, 452
AluBI AGCT 3 cut(s) 129, 223, 254
AluI AGCT 3 cut(s) 129, 223, 254
Alw26I GTCTC 1 cut(s) 171
ApeKI GCWGC 2 cut(s) 129, 251
AscI GGCGCGCC 2 cut(s) 262, 284
Asp700I GAANNNNTTC 2 cut(s) 16, 307
AspLEI GCGC 5 cut(s) 264, 266, 286, 288, 300
AspS9I GGNCC 2 cut(s) 24, 457
AsuHPI GGTGA 4 cut(s) 19, 83, 284, 315
AvaII GGWCC 2 cut(s) 24, 457
BanI GGYRCC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 116, 263
BccI CCATC 1 cut(s) 75
BciVI GTATCC 1 cut(s) 394
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 171
BfoI RGCGCY 1 cut(s) 301
BfuI GTATCC 1 cut(s) 394
BisI GCNGC 2 cut(s) 130, 252
BlsI GCNGC 2 cut(s) 131, 253
Bme18I GGWCC 2 cut(s) 24, 457
BmgT120I GGNCC 2 cut(s) 24, 457
BmiI GGNNCC 2 cut(s) 93, 299
BmsI GCATC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse118I RCCGGY 1 cut(s) 294
Bse1I ACTGG 1 cut(s) 356
BseGI GGATG 2 cut(s) 141, 196
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMII CTCAG 2 cut(s) 38, 429
BseNI ACTGG 1 cut(s) 356
BsePI GCGCGC 2 cut(s) 262, 284
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 2 cut(s) 116, 263
Bsh1236I CGCG 2 cut(s) 264, 286
BshNI GGYRCC 1 cut(s) 297
BsiSI CCGG 2 cut(s) 133, 295
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 171
Bsp143I GATC 3 cut(s) 37, 199, 207
BspCNI CTCAG 2 cut(s) 39, 430
BspFNI CGCG 2 cut(s) 264, 286
BspLI GGNNCC 2 cut(s) 93, 299
BspT107I GGYRCC 1 cut(s) 297
BsrFI RCCGGY 1 cut(s) 294
BsrI ACTGG 1 cut(s) 356
BssAI RCCGGY 1 cut(s) 294
BssHII GCGCGC 2 cut(s) 262, 284
BssMI GATC 3 cut(s) 37, 199, 207
BssNI GRCGYC 1 cut(s) 298
Bst6I CTCTTC 2 cut(s) 102, 180
BstACI GRCGYC 1 cut(s) 298
BstC8I GCNNGC 3 cut(s) 106, 264, 286
BstDEI CTNAG 2 cut(s) 47, 438
BstF5I GGATG 2 cut(s) 141, 196
BstFNI CGCG 2 cut(s) 264, 286
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 5 cut(s) 264, 266, 286, 288, 300
BstKTI GATC 3 cut(s) 40, 202, 210
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 3 cut(s) 37, 199, 207
BstMWI GCNNNNNNNGC 2 cut(s) 126, 220
BstUI CGCG 2 cut(s) 264, 286
BstV1I GCAGC 2 cut(s) 116, 263
BsuI GTATCC 1 cut(s) 394
BtsCI GGATG 2 cut(s) 141, 196
Cac8I GCNNGC 3 cut(s) 106, 264, 286
CfoI GCGC 5 cut(s) 264, 266, 286, 288, 300
Cfr10I RCCGGY 1 cut(s) 294
Cfr13I GGNCC 2 cut(s) 24, 457
CviAII CATG 3 cut(s) 21, 68, 368
CviJI RGCY 7 cut(s) 108, 129, 160, 214, 223, 254, 407
CviKI_1 RGCY 7 cut(s) 108, 129, 160, 214, 223, 254, 407
DdeI CTNAG 2 cut(s) 47, 438
DinI GGCGCC 1 cut(s) 299
DpnI GATC 3 cut(s) 39, 201, 209
DpnII GATC 3 cut(s) 37, 199, 207
Eam1104I CTCTTC 2 cut(s) 102, 180
EarI CTCTTC 2 cut(s) 102, 180
Eco47I GGWCC 2 cut(s) 24, 457
EgeI GGCGCC 1 cut(s) 299
EheI GGCGCC 1 cut(s) 299
FaeI CATG 3 cut(s) 24, 71, 371
FaiI YATR 5 cut(s) 22, 69, 332, 369, 422
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 3 cut(s) 20, 67, 367
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 2 cut(s) 130, 252
FokI GGATG 2 cut(s) 148, 203
Fsp4HI GCNGC 2 cut(s) 130, 252
GlaI GCGC 5 cut(s) 263, 265, 285, 287, 299
GluI GCNGC 2 cut(s) 130, 252
GsuI CTGGAG 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 301
HapII CCGG 2 cut(s) 133, 295
HhaI GCGC 5 cut(s) 264, 266, 286, 288, 300
Hin1I GRCGYC 1 cut(s) 298
Hin1II CATG 3 cut(s) 24, 71, 371
Hin6I GCGC 5 cut(s) 262, 264, 284, 286, 298
HinP1I GCGC 5 cut(s) 262, 264, 284, 286, 298
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HindIII AAGCTT 1 cut(s) 221
HpaII CCGG 2 cut(s) 133, 295
HphI GGTGA 4 cut(s) 19, 83, 284, 315
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 2 cut(s) 48, 219
Hpy188III TCNNGA 2 cut(s) 169, 379
Hpy8I GTNNAC 1 cut(s) 318
HpyCH4V TGCA 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 220
HpyF3I CTNAG 2 cut(s) 47, 438
Hsp92I GRCGYC 1 cut(s) 298
Hsp92II CATG 3 cut(s) 24, 71, 371
HspAI GCGC 5 cut(s) 262, 264, 284, 286, 298
KasI GGCGCC 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 3 cut(s) 37, 199, 207
LpnPI CCDG 9 cut(s) 90, 146, 196, 220, 240, 308, 337, 392, 473
Lsp1109I GCAGC 2 cut(s) 116, 263
LweI GCATC 1 cut(s) 107
MalI GATC 3 cut(s) 39, 201, 209
MboI GATC 3 cut(s) 37, 199, 207
MboII GAAGA 7 cut(s) 35, 47, 89, 90, 197, 383, 491
MluCI AATT 3 cut(s) 148, 342, 430
Mly113I GGCGCC 1 cut(s) 298
MroXI GAANNNNTTC 2 cut(s) 16, 307
MseI TTAA 1 cut(s) 110
MslI CAYNNNNRTG 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 2 cut(s) 133, 295
MvnI CGCG 2 cut(s) 264, 286
MwoI GCNNNNNNNGC 2 cut(s) 126, 220
NarI GGCGCC 1 cut(s) 298
NdeII GATC 3 cut(s) 37, 199, 207
NlaIII CATG 3 cut(s) 24, 71, 371
NlaIV GGNNCC 2 cut(s) 93, 299
PalAI GGCGCGCC 2 cut(s) 262, 284
PauI GCGCGC 2 cut(s) 262, 284
PdmI GAANNNNTTC 2 cut(s) 16, 307
PkrI GCNGC 2 cut(s) 131, 253
PluTI GGCGCC 1 cut(s) 301
PspN4I GGNNCC 2 cut(s) 93, 299
PspPI GGNCC 2 cut(s) 24, 457
PteI GCGCGC 2 cut(s) 262, 284
PvuII CAGCTG 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 2 cut(s) 130, 252
Sau3AI GATC 3 cut(s) 37, 199, 207
Sau96I GGNCC 2 cut(s) 24, 457
SfaNI GCATC 1 cut(s) 107
SfoI GGCGCC 1 cut(s) 299
SgrAI CRCCGGYG 1 cut(s) 294
SgsI GGCGCGCC 2 cut(s) 262, 284
SinI GGWCC 2 cut(s) 24, 457
SmiMI CAYNNNNRTG 1 cut(s) 372
Sse9I AATT 3 cut(s) 148, 342, 430
SspDI GGCGCC 1 cut(s) 297
TaqI TCGA 1 cut(s) 198
TasI AATT 3 cut(s) 148, 342, 430
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TseI GCWGC 2 cut(s) 129, 251
TspDTI ATGAA 4 cut(s) 9, 207, 300, 384
VpaK11BI GGWCC 2 cut(s) 24, 457
XmnI GAANNNNTTC 2 cut(s) 16, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.