pycom05g25770
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000402
Physical Location & Seq
Forward (+)
27101018 .. 27103432
2415 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g25770.2

Sequence Viewer

Length: 714 bp
ATGGAGGATAGTAATTTGCTGGGAATAATGAGGAAGGGTGCCTGGACTCAACAGGAAGATGATATTCTGAGGCAGTACGTTGAAAAGCATGGAGATGGAAAGTGGCACCAGGTTCCTCGCGAAACAGGTCTAAACAGATGCAGGAAAAGCTGCAGACAGAGGTGGTTGAACTATTTGAAGCCGAATCTCAAGAGCGGAGATTTCACAGAGGATGAAATAGATCTAATCCATAGACTTCAGAAACTTTTGGGAAACAGGTGGTCAATAATTGCTGGAAGACTCCCAGGAAGAACAGCAGGCAAGGTAAAAAATTATTGGAATAGCAAGCAACGAAAGGAGTTGGAATATATGAAGGATAAATCCAAAGAAAGAACAAAAGCCACATCCGTCATAAGACCTCAACCACGGAGAGCTAGAGTTGCAATTTTTCAATCTGAAGAGAACTGTAGCAGGTTATTACAGACATCATCACCACCTACAGAAAACGCTATTGATTCATGGAAGGCCATGTTGCATGATACAGACAATGTTGATGGAACACCATTTTCTAGTTTAGGGTTAGGGGAAGACCTCTTCACAAACTTTTGGGTTGAAGATATTGCACAGTCGACAATGGTAGGCATGAATTCTGCTGATGAAGGGTTACACATGAGTGGCAACTTTTCCTTTAGAGAGAACTTTTGGAATCTAGAAGAAGAGAGAACTAAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

238

Amino Acids

27.55

Weight (kDa)

8.7

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 441
AccB1I GGYRCC 2 cut(s) 38, 105
AccBSI CCGCTC 1 cut(s) 195
AccI GTMKAC 1 cut(s) 608
AccII CGCG 1 cut(s) 120
AciI CCGC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 625
AcuI CTGAAG 2 cut(s) 221, 456
AfaI GTAC 1 cut(s) 77
AgsI TTSAA 5 cut(s) 83, 169, 178, 431, 593
AjnI CCWGG 3 cut(s) 41, 108, 283
AleI CACNNNNGTG 1 cut(s) 651
AluBI AGCT 2 cut(s) 150, 413
AluI AGCT 2 cut(s) 150, 413
AoxI GGCC 1 cut(s) 504
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 625
AsuHPI GGTGA 1 cut(s) 462
BanI GGYRCC 2 cut(s) 38, 105
BbsI GAAGAC 2 cut(s) 283, 573
BbvI GCAGC 1 cut(s) 137
BccI CCATC 2 cut(s) 89, 527
BciT130I CCWGG 3 cut(s) 43, 110, 285
BfaI CTAG 3 cut(s) 414, 549, 689
BfmI CTRYAG 3 cut(s) 151, 445, 477
BfuAI ACCTGC 1 cut(s) 441
BglII AGATCT 1 cut(s) 220
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 3 cut(s) 43, 110, 285
BmiI GGNNCC 3 cut(s) 40, 107, 114
BmrFI CCNGG 3 cut(s) 43, 110, 285
BmsI GCATC 1 cut(s) 128
BpiI GAAGAC 2 cut(s) 283, 573
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 283, 404
BseBI CCWGG 3 cut(s) 43, 110, 285
BseDI CCNNGG 2 cut(s) 283, 404
BseGI GGATG 2 cut(s) 217, 383
BseMII CTCAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 137
BseYI CCCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 506
BshNI GGYRCC 2 cut(s) 38, 105
BsnI GGCC 1 cut(s) 506
Bsp143I GATC 1 cut(s) 220
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 1 cut(s) 195
BspANI GGCC 1 cut(s) 506
BspCNI CTCAG 1 cut(s) 60
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 3 cut(s) 40, 107, 114
BspMAI CTGCAG 1 cut(s) 155
BspMI ACCTGC 1 cut(s) 441
BspT107I GGYRCC 2 cut(s) 38, 105
BsrBI CCGCTC 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 283, 404
BssMI GATC 1 cut(s) 220
Bst2UI CCWGG 3 cut(s) 43, 110, 285
Bst4CI ACNGT 2 cut(s) 446, 606
Bst6I CTCTTC 3 cut(s) 432, 578, 690
BstC8I GCNNGC 2 cut(s) 298, 326
BstDEI CTNAG 2 cut(s) 68, 705
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 2 cut(s) 217, 383
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 2 cut(s) 147, 419
BstNI CCWGG 3 cut(s) 43, 110, 285
BstSCI CCNGG 3 cut(s) 41, 108, 283
BstSFI CTRYAG 3 cut(s) 151, 445, 477
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 137
BstV2I GAAGAC 2 cut(s) 283, 573
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 1 cut(s) 506
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 2 cut(s) 217, 383
BtuMI TCGCGA 1 cut(s) 120
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 2 cut(s) 298, 326
CsiI ACCWGGT 1 cut(s) 108
Csp6I GTAC 1 cut(s) 76
CviAII CATG 6 cut(s) 89, 498, 508, 515, 622, 649
CviJI RGCY 5 cut(s) 150, 181, 380, 413, 506
CviKI_1 RGCY 5 cut(s) 150, 181, 380, 413, 506
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 2 cut(s) 68, 705
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eam1104I CTCTTC 3 cut(s) 432, 578, 690
EarI CTCTTC 3 cut(s) 432, 578, 690
Eco57I CTGAAG 2 cut(s) 221, 456
EcoRI GAATTC 1 cut(s) 625
EcoRII CCWGG 3 cut(s) 41, 108, 283
FaeI CATG 6 cut(s) 92, 501, 511, 518, 625, 652
FatI CATG 6 cut(s) 88, 497, 507, 514, 621, 648
FblI GTMKAC 1 cut(s) 608
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 2 cut(s) 224, 370
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 3 cut(s) 414, 549, 689
GluI GCNGC 1 cut(s) 151
GsaI CCCAGC 1 cut(s) 23
HaeIII GGCC 1 cut(s) 506
Hin1II CATG 6 cut(s) 92, 501, 511, 518, 625, 652
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HinfI GANTC 5 cut(s) 46, 184, 279, 494, 685
HphI GGTGA 1 cut(s) 462
Hpy166II GTNNAC 1 cut(s) 609
Hpy188I TCNGA 3 cut(s) 69, 240, 436
Hpy188III TCNNGA 3 cut(s) 119, 190, 689
Hpy8I GTNNAC 1 cut(s) 609
HpyAV CCTTC 4 cut(s) 28, 346, 496, 632
HpyCH4III ACNGT 2 cut(s) 446, 606
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 5 cut(s) 141, 153, 422, 514, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 419
HpyF3I CTNAG 2 cut(s) 68, 705
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 6 cut(s) 92, 501, 511, 518, 625, 652
Kzo9I GATC 1 cut(s) 220
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 1 cut(s) 128
MabI ACCWGGT 1 cut(s) 108
MaeI CTAG 3 cut(s) 414, 549, 689
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 642
MalI GATC 1 cut(s) 222
MbiI CCGCTC 1 cut(s) 195
MboI GATC 1 cut(s) 220
MboII GAAGA 9 cut(s) 68, 288, 300, 449, 565, 578, 605, 704, 707
MflI RGATCY 1 cut(s) 220
MluCI AATT 5 cut(s) 13, 267, 310, 423, 625
MlyI GAGTC 2 cut(s) 40, 273
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 7 cut(s) 24, 63, 126, 153, 202, 408, 581
MslI CAYNNNNRTG 2 cut(s) 93, 651
MspR9I CCNGG 3 cut(s) 43, 110, 285
MvaI CCWGG 3 cut(s) 43, 110, 285
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 147, 419
NdeII GATC 1 cut(s) 220
NlaIII CATG 6 cut(s) 92, 501, 511, 518, 625, 652
NlaIV GGNNCC 3 cut(s) 40, 107, 114
NruI TCGCGA 1 cut(s) 120
OliI CACNNNNGTG 1 cut(s) 651
PfeI GAWTC 3 cut(s) 184, 494, 685
PkrI GCNGC 1 cut(s) 152
PleI GAGTC 2 cut(s) 40, 273
PpsI GAGTC 2 cut(s) 40, 273
Psp6I CCWGG 3 cut(s) 41, 108, 283
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 3 cut(s) 41, 108, 283
PspN4I GGNNCC 3 cut(s) 40, 107, 114
PstI CTGCAG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 220
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 2 cut(s) 93, 651
SalI GTCGAC 1 cut(s) 607
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 1 cut(s) 220
SchI GAGTC 2 cut(s) 40, 273
ScrFI CCNGG 3 cut(s) 43, 110, 285
SexAI ACCWGGT 1 cut(s) 108
SfaNI GCATC 1 cut(s) 128
SfcI CTRYAG 3 cut(s) 151, 445, 477
SmiMI CAYNNNNRTG 2 cut(s) 93, 651
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 5 cut(s) 13, 267, 310, 423, 625
SsiI CCGC 1 cut(s) 195
SspMI CTAG 3 cut(s) 414, 549, 689
StyD4I CCNGG 3 cut(s) 41, 108, 283
TaaI ACNGT 2 cut(s) 446, 606
TaiI ACGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 608
TasI AATT 5 cut(s) 13, 267, 310, 423, 625
TfiI GAWTC 3 cut(s) 184, 494, 685
TseI GCWGC 1 cut(s) 150
TspDTI ATGAA 5 cut(s) 228, 365, 486, 638, 651
TspGWI ACGGA 2 cut(s) 376, 421
XapI RAATTY 1 cut(s) 625
XbaI TCTAGA 1 cut(s) 688
XmiI GTMKAC 1 cut(s) 608
XspI CTAG 3 cut(s) 414, 549, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.