Rroxscaffold_5G00359730
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000402
Physical Location & Seq
Forward (+)
39997504 .. 40001736
4233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359730.1

Sequence Viewer

Length: 648 bp
ATGGAGTTGAGAAAAGGTGCATGGACCAAAGAGGAAGATCATCTTCTCAGGAAATGCATTGAAAAACATGGAGAAGGAAGATGGCACAAGATTCCTCTCCAAGCAGGCTTAAAGAGATGCAGAAAGAGCTGTAGAATGAGGTGGTTGAACTACCTGAAGCCAACCATCAAGAGAGGAGAATTTGAAGACGATGAAGTCGATCTAATGATTAAGCTTTATAAGCTTTTAGGAAACAGGTGGTCATTGATTGCTGGCCGACTTCCAGGAAGAACCTCAAATGATGTGAAAAACTATTGGAATGCTCGGCGAAGGAGAAATATGGATTTGAACATCGTAAAAAATAAATCTCGACAAATGACAAAGACCACTATAATAAAGCCTCGACCACGAATCTTCACAAAAAGTTTACATATTCCGGGTGGCAGAGCAGCAACCTCAAAGAATAGTAATATGAACATATCATTACCTCCAGTAAATGAACTTGATGAGTGGAAAATTGTACTAGCGGAACATGTCCCTACAAACTTATGGGTTCAAGACATGGCCCGAGTGACCGAAACATGTGTCAATGTTGCCGAACAGAGTTTCGAATCTGACCTCTGGCATTTTCTCGAAGAAGAGATGAGAGAGCAAGATTCAGACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

215

Amino Acids

25.41

Weight (kDa)

9.64

Isoelectric Point (pI)

58.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 52 3.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 8 - 67 2.5e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 58 - 100 1.6e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 62 - 103 9.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
AasI GACNNNNNNGTC 1 cut(s) 194
AciI CCGC 1 cut(s) 506
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 1 cut(s) 501
AflIII ACRYGT 2 cut(s) 511, 560
AgsI TTSAA 5 cut(s) 62, 148, 185, 328, 536
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 3 cut(s) 129, 214, 223
AluI AGCT 3 cut(s) 129, 214, 223
Ama87I CYCGRG 1 cut(s) 546
AoxI GGCC 2 cut(s) 253, 543
ApeKI GCWGC 1 cut(s) 428
ApoI RAATTY 1 cut(s) 179
ArsI GACNNNNNNTTYG 2 cut(s) 549, 581
AspS9I GGNCC 2 cut(s) 24, 544
AsuC2I CCSGG 1 cut(s) 417
AsuII TTCGAA 1 cut(s) 588
AvaI CYCGRG 1 cut(s) 546
AvaII GGWCC 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 440
BccI CCATC 2 cut(s) 75, 173
BciT130I CCWGG 1 cut(s) 264
BcnI CCSGG 1 cut(s) 417
BfaI CTAG 1 cut(s) 503
BfmI CTRYAG 1 cut(s) 130
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
Bme1390I CCNGG 2 cut(s) 264, 417
Bme18I GGWCC 1 cut(s) 24
BmeT110I CYCGRG 1 cut(s) 546
BmgT120I GGNCC 2 cut(s) 24, 544
BmrFI CCNGG 2 cut(s) 264, 417
BmsI GCATC 1 cut(s) 107
BpiI GAAGAC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 453
Bpu14I TTCGAA 1 cut(s) 588
BpuMI CCSGG 1 cut(s) 417
Bse1I ACTGG 1 cut(s) 470
BseBI CCWGG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 1 cut(s) 440
BshFI GGCC 2 cut(s) 255, 545
BsiHKCI CYCGRG 1 cut(s) 546
BsiSI CCGG 1 cut(s) 416
BslFI GGGAC 1 cut(s) 500
BsmFI GGGAC 1 cut(s) 500
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 2 cut(s) 255, 545
BsoBI CYCGRG 1 cut(s) 546
Bsp119I TTCGAA 1 cut(s) 588
Bsp143I GATC 2 cut(s) 37, 199
BspACI CCGC 1 cut(s) 506
BspANI GGCC 2 cut(s) 255, 545
BspCNI CTCAG 1 cut(s) 60
BspT104I TTCGAA 1 cut(s) 588
BsrI ACTGG 1 cut(s) 470
BssMI GATC 2 cut(s) 37, 199
Bst2UI CCWGG 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 612
BstBI TTCGAA 1 cut(s) 588
BstC8I GCNNGC 2 cut(s) 106, 253
BstDEI CTNAG 1 cut(s) 47
BstKTI GATC 2 cut(s) 40, 202
BstMBI GATC 2 cut(s) 37, 199
BstMWI GCNNNNNNNGC 2 cut(s) 126, 220
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 2 cut(s) 515, 564
BstSCI CCNGG 2 cut(s) 262, 415
BstSFI CTRYAG 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 440
BstV2I GAAGAC 1 cut(s) 192
BsuRI GGCC 2 cut(s) 255, 545
Cac8I GCNNGC 2 cut(s) 106, 253
Cfr13I GGNCC 2 cut(s) 24, 544
Csp6I GTAC 1 cut(s) 500
CviAII CATG 5 cut(s) 21, 68, 512, 541, 561
CviJI RGCY 8 cut(s) 108, 129, 160, 214, 223, 255, 379, 545
CviKI_1 RGCY 8 cut(s) 108, 129, 160, 214, 223, 255, 379, 545
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 1 cut(s) 47
DpnI GATC 2 cut(s) 39, 201
DpnII GATC 2 cut(s) 37, 199
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco47I GGWCC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 546
EcoRII CCWGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 59
FaeI CATG 5 cut(s) 24, 71, 515, 544, 564
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 1 cut(s) 500
FatI CATG 5 cut(s) 20, 67, 511, 540, 560
Fnu4HI GCNGC 1 cut(s) 429
Fsp4HI GCNGC 1 cut(s) 429
FspBI CTAG 1 cut(s) 503
GluI GCNGC 1 cut(s) 429
GsuI CTGGAG 1 cut(s) 453
HaeIII GGCC 2 cut(s) 255, 545
HapII CCGG 1 cut(s) 416
Hin1II CATG 5 cut(s) 24, 71, 515, 544, 564
HindIII AAGCTT 2 cut(s) 212, 221
HinfI GANTC 4 cut(s) 91, 390, 590, 635
HpaII CCGG 1 cut(s) 416
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 2 cut(s) 595, 640
Hpy188III TCNNGA 5 cut(s) 49, 169, 348, 536, 611
Hpy8I GTNNAC 1 cut(s) 407
HpyAV CCTTC 2 cut(s) 68, 303
HpyCH4V TGCA 3 cut(s) 20, 57, 120
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 220
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 5 cut(s) 24, 71, 515, 544, 564
Kzo9I GATC 2 cut(s) 37, 199
Lsp1109I GCAGC 1 cut(s) 440
LweI GCATC 1 cut(s) 107
MaeI CTAG 1 cut(s) 503
MaeIII GTNAC 1 cut(s) 550
MalI GATC 2 cut(s) 39, 201
MboI GATC 2 cut(s) 37, 199
MboII GAAGA 8 cut(s) 35, 47, 90, 197, 279, 385, 626, 629
MluCI AATT 2 cut(s) 179, 495
MnlI CCTC 9 cut(s) 25, 105, 132, 167, 283, 390, 445, 477, 608
Mph1103I ATGCAT 1 cut(s) 59
MseI TTAA 2 cut(s) 110, 210
MspI CCGG 1 cut(s) 416
MspR9I CCNGG 2 cut(s) 264, 417
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 126, 220
NciI CCSGG 1 cut(s) 417
NdeII GATC 2 cut(s) 37, 199
NlaIII CATG 5 cut(s) 24, 71, 515, 544, 564
NmeAIII GCCGAG 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 550
NsiI ATGCAT 1 cut(s) 59
NspI RCATGY 2 cut(s) 515, 564
NspV TTCGAA 1 cut(s) 588
PciI ACATGT 2 cut(s) 511, 560
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 4 cut(s) 91, 390, 590, 635
PfoI TCCNGGA 1 cut(s) 262
PkrI GCNGC 1 cut(s) 430
PscI ACATGT 2 cut(s) 511, 560
PsiI TTATAA 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspPI GGNCC 2 cut(s) 24, 544
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
SaqAI TTAA 2 cut(s) 110, 210
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 2 cut(s) 37, 199
Sau96I GGNCC 2 cut(s) 24, 544
ScrFI CCNGG 2 cut(s) 264, 417
SfaNI GCATC 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 130
SfuI TTCGAA 1 cut(s) 588
SinI GGWCC 1 cut(s) 24
Sse9I AATT 2 cut(s) 179, 495
SsiI CCGC 1 cut(s) 506
SspMI CTAG 1 cut(s) 503
StyD4I CCNGG 2 cut(s) 262, 415
TaqI TCGA 5 cut(s) 198, 349, 382, 588, 612
TaqII GACCGA 1 cut(s) 569
TasI AATT 2 cut(s) 179, 495
TatI WGTACW 1 cut(s) 499
TfiI GAWTC 4 cut(s) 91, 390, 590, 635
Tru1I TTAA 2 cut(s) 110, 210
Tru9I TTAA 2 cut(s) 110, 210
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 1 cut(s) 428
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 3 cut(s) 207, 467, 492
VpaK11BI GGWCC 1 cut(s) 24
XapI RAATTY 1 cut(s) 179
XceI RCATGY 2 cut(s) 515, 564
XspI CTAG 1 cut(s) 503
Zsp2I ATGCAT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.