Rh3AG069900
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000402
Physical Location & Seq
Forward (+)
4900304 .. 4900759
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG069900.1

Sequence Viewer

Length: 264 bp
ATGAAGGACCACTCGGTTTTACGAAAAGGTGCATGGACCATTGAAGAAGATAAACTTCTGACTCAGTGCATTGAAAAGCACGGAGAAGGAAGATGGCACCTGGTTCCTCGAGCTACAGGCTTAAAGAGATGCAGGAAGAGCTGTAGGTTGAGGTGGTTGAATTATCTAAAACCGGATATAAAGAGAGGAGAATTTGATAAGGACGAAATTGATCTCATGCTTAGGCTTCACAAGCTTTTAGGCAACAGGCAAGCAGAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

87

Amino Acids

10.39

Weight (kDa)

9.67

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 9 - 56 1.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 12 - 71 1.4e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 96
AcsI RAATTY 2 cut(s) 191, 258
AgsI TTSAA 3 cut(s) 44, 74, 160
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 3 cut(s) 113, 141, 235
AluI AGCT 3 cut(s) 113, 141, 235
Ama87I CYCGRG 1 cut(s) 108
ApoI RAATTY 2 cut(s) 191, 258
AspS9I GGNCC 2 cut(s) 7, 36
AvaI CYCGRG 1 cut(s) 108
AvaII GGWCC 2 cut(s) 7, 36
BanI GGYRCC 1 cut(s) 96
BccI CCATC 1 cut(s) 87
BciT130I CCWGG 1 cut(s) 101
BfmI CTRYAG 2 cut(s) 114, 142
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 2 cut(s) 7, 36
BmeT110I CYCGRG 1 cut(s) 108
BmgT120I GGNCC 2 cut(s) 7, 36
BmiI GGNNCC 2 cut(s) 98, 105
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 119
Bpu10I CCTNAGC 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 172
BseBI CCWGG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 108
BsiSI CCGG 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 108
Bsp143I GATC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 98, 105
BspQI GCTCTTC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 96
BssMI GATC 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 2 cut(s) 63, 221
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 138, 232
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 2 cut(s) 114, 142
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 252
Cfr13I GGNCC 2 cut(s) 7, 36
CsiI ACCWGGT 1 cut(s) 99
CviAII CATG 2 cut(s) 33, 217
CviJI RGCY 5 cut(s) 113, 120, 141, 226, 235
CviKI_1 RGCY 5 cut(s) 113, 120, 141, 226, 235
DdeI CTNAG 2 cut(s) 63, 221
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 7, 36
Eco88I CYCGRG 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 99
FaeI CATG 2 cut(s) 36, 220
FaiI YATR 3 cut(s) 34, 179, 218
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 2 cut(s) 32, 216
HapII CCGG 1 cut(s) 173
Hin1II CATG 2 cut(s) 36, 220
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 1 cut(s) 61
HpaII CCGG 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 60
HpyAV CCTTC 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 32, 69, 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 232
HpyF3I CTNAG 2 cut(s) 63, 221
Hsp92II CATG 2 cut(s) 36, 220
Kzo9I GATC 1 cut(s) 211
LguI GCTCTTC 1 cut(s) 131
LpnPI CCDG 6 cut(s) 86, 102, 113, 118, 186, 232
LweI GCATC 1 cut(s) 119
MabI ACCWGGT 1 cut(s) 99
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 4 cut(s) 56, 59, 102, 148
MluCI AATT 4 cut(s) 160, 191, 207, 258
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 3 cut(s) 117, 144, 179
MseI TTAA 2 cut(s) 122, 262
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 138, 232
NdeII GATC 1 cut(s) 211
NlaIII CATG 2 cut(s) 36, 220
NlaIV GGNNCC 2 cut(s) 98, 105
PaeR7I CTCGAG 1 cut(s) 108
PciSI GCTCTTC 1 cut(s) 131
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 98, 105
PspPI GGNCC 2 cut(s) 7, 36
PspXI VCTCGAGB 1 cut(s) 108
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 122, 262
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 2 cut(s) 7, 36
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 101
SetI ASST 7 cut(s) 31, 102, 115, 143, 149, 155, 237
SexAI ACCWGGT 1 cut(s) 99
SfaNI GCATC 1 cut(s) 119
SfcI CTRYAG 2 cut(s) 114, 142
Sfr274I CTCGAG 1 cut(s) 108
SinI GGWCC 2 cut(s) 7, 36
SlaI CTCGAG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 4 cut(s) 160, 191, 207, 258
StyD4I CCNGG 1 cut(s) 99
TaqI TCGA 1 cut(s) 109
TasI AATT 4 cut(s) 160, 191, 207, 258
Tru1I TTAA 2 cut(s) 122, 262
Tru9I TTAA 2 cut(s) 122, 262
TscAI CASTG 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 1 cut(s) 71
VpaK11BI GGWCC 2 cut(s) 7, 36
XapI RAATTY 2 cut(s) 191, 258
XhoI CTCGAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.