Rh2AG259100
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000402
Physical Location & Seq
Reverse (-)
29755239 .. 29757656
2418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG259100.1

Sequence Viewer

Length: 474 bp
ATGGTTGTAAGGTGGTCTTTAATTGCTGGAAGACTACCGGGAAGAACAGCCAACGATGTAAAGAACTACTGGAATACTTATCAACGGAAAAAGAATCAAAAGATGACTTCAGGCGCAAAAAAAAAGAAAGATAAATCCCAAAAAAACACAATCGCCCCTTTGGTTGTAAGACCTCGACCACGAACCTTCATAAAAAGGTTGAATTTTTTGGAAAGAGATGCCAATTTAGAGCATATTCATTCAGAAGAGAATTCTTCCACTTCTTTACCAACAGCACCACCACAAACTCTAGAATTAGAGAATGTAATTGATTGGTGGAAAGTTGTATCTGAAGACAGTACAGGAAGCATTGATAGGACAACATGTTCTAGTATTGGTTTAGAGGACGACTTCTTCACAAACTTCTGGGTTGAAGATATGGTACAATTGTCAAGTATAGATGGCCATGATCTAGTCAACAACTTCTACGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

157

Amino Acids

18.07

Weight (kDa)

8.69

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 4 - 27 1.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 442
AcsI RAATTY 2 cut(s) 202, 250
AcuI CTGAAG 2 cut(s) 93, 351
AfaI GTAC 2 cut(s) 340, 423
AflIII ACRYGT 1 cut(s) 362
AgsI TTSAA 2 cut(s) 202, 413
AloI GAACNNNNNNTCC 2 cut(s) 349, 381
AoxI GGCC 1 cut(s) 442
ApoI RAATTY 2 cut(s) 202, 250
AspLEI GCGC 1 cut(s) 116
AsuC2I CCSGG 1 cut(s) 39
BaeI ACNNNNGTAYC 2 cut(s) 413, 446
BalI TGGCCA 1 cut(s) 444
BarI GAAGNNNNNNTAC 2 cut(s) 405, 437
BbsI GAAGAC 2 cut(s) 37, 339
BccI CCATC 1 cut(s) 434
BcnI CCSGG 1 cut(s) 39
BfaI CTAG 3 cut(s) 290, 369, 452
Bme1390I CCNGG 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 2 cut(s) 37, 339
BpuMI CCSGG 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 74
BshFI GGCC 1 cut(s) 444
BsiSI CCGG 1 cut(s) 38
BsnI GGCC 1 cut(s) 444
Bsp143I GATC 1 cut(s) 448
BspANI GGCC 1 cut(s) 444
BsrI ACTGG 1 cut(s) 74
BssMI GATC 1 cut(s) 448
Bst4CI ACNGT 1 cut(s) 338
Bst6I CTCTTC 1 cut(s) 240
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 451
BstMBI GATC 1 cut(s) 448
BstNSI RCATGY 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 37
BstV2I GAAGAC 2 cut(s) 37, 339
BsuRI GGCC 1 cut(s) 444
CfoI GCGC 1 cut(s) 116
Csp6I GTAC 2 cut(s) 339, 422
CviAII CATG 3 cut(s) 363, 446, 471
CviJI RGCY 2 cut(s) 50, 444
CviKI_1 RGCY 2 cut(s) 50, 444
CviQI GTAC 2 cut(s) 339, 422
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 442
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco57I CTGAAG 2 cut(s) 93, 351
EcoRI GAATTC 1 cut(s) 250
FaeI CATG 3 cut(s) 366, 449, 474
FaiI YATR 7 cut(s) 191, 234, 364, 419, 437, 447, 472
FalI AAGNNNNNCTT 1 cut(s) 33
FatI CATG 3 cut(s) 362, 445, 470
FspBI CTAG 3 cut(s) 290, 369, 452
GlaI GCGC 1 cut(s) 115
HaeIII GGCC 1 cut(s) 444
HapII CCGG 1 cut(s) 38
HhaI GCGC 1 cut(s) 116
Hin1II CATG 3 cut(s) 366, 449, 474
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 1 cut(s) 94
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 2 cut(s) 244, 331
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 457
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 338
Hsp92II CATG 3 cut(s) 366, 449, 474
HspAI GCGC 1 cut(s) 114
Kzo9I GATC 1 cut(s) 448
LpnPI CCDG 6 cut(s) 12, 51, 55, 96, 327, 391
LweI GCATC 1 cut(s) 208
MaeI CTAG 3 cut(s) 290, 369, 452
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 7 cut(s) 42, 54, 246, 257, 344, 385, 425
MfeI CAATTG 1 cut(s) 425
MlsI TGGCCA 1 cut(s) 444
MluCI AATT 7 cut(s) 21, 202, 223, 250, 293, 306, 425
MluNI TGGCCA 1 cut(s) 444
MnlI CCTC 2 cut(s) 183, 376
Mox20I TGGCCA 1 cut(s) 444
MscI TGGCCA 1 cut(s) 444
MseI TTAA 1 cut(s) 20
Msp20I TGGCCA 1 cut(s) 444
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 39
MunI CAATTG 1 cut(s) 425
NciI CCSGG 1 cut(s) 39
NdeII GATC 1 cut(s) 448
NlaIII CATG 3 cut(s) 366, 449, 474
NspI RCATGY 1 cut(s) 366
PciI ACATGT 1 cut(s) 362
PfeI GAWTC 1 cut(s) 94
PscI ACATGT 1 cut(s) 362
RsaI GTAC 2 cut(s) 340, 423
RsaNI GTAC 2 cut(s) 339, 422
SaqAI TTAA 1 cut(s) 20
Sau3AI GATC 1 cut(s) 448
ScrFI CCNGG 1 cut(s) 39
SetI ASST 4 cut(s) 14, 175, 188, 200
SfaNI GCATC 1 cut(s) 208
Sse9I AATT 7 cut(s) 21, 202, 223, 250, 293, 306, 425
SspMI CTAG 3 cut(s) 290, 369, 452
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 338
TaqI TCGA 1 cut(s) 175
TasI AATT 7 cut(s) 21, 202, 223, 250, 293, 306, 425
TatI WGTACW 1 cut(s) 338
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 178, 227
TspGWI ACGGA 1 cut(s) 100
XapI RAATTY 2 cut(s) 202, 250
XbaI TCTAGA 1 cut(s) 289
XceI RCATGY 1 cut(s) 366
XspI CTAG 3 cut(s) 290, 369, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.