Rw7G036930
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000402
Physical Location & Seq
Forward (+)
56005637 .. 56006710
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G036930.1

Sequence Viewer

Length: 702 bp
ATGGAGGACCAGTCGGGTTTGAGAAGAGGTGCGTGGACCATAGAAGAAGATAATCTTCTGAGGCAGTGTATTGCAAAGCATGGAGAAGGAAGATGGCGCCAGATTCCTCCAGCTGCAGGCTTAAACAGATGCGGGAAGAGCTGTAGGCTAAGATGGGTCAATTATCTGAAACCGGATATAAAGAGAGGAGATTTCGAGGACGATGAAGTAGATCTCCTCCATAGGCTTCACAACCTTTTAGGCAACAGGTGGTCATTGATTGCTGGAAGACTTCCGGGAAGAACAGCAAATGATGTGAAAAACTTTTGGAACACCAAGCGGCGTCGGGACAAACCACAAAGATTGGTGAAGCCCATCATACTAAGACCTAAACCACGAAGGTTAATCTCGACCAGTTCACTCTGTTTGACAGGTCAAGGTTTAATCGGAGATCAGAGTCAGTTAAAAAAGAACATTAGCATGGCTTTACCAACATCATCAGCGTCACCAACATCACCAATACAGCAGGAAATTGATCGGTTGAGAGCCTTTTTAGAGGAGGAGGAGAGTATTCGAACCACAACCTGTTTTAGTTTGACCCCTGAAAGATTATTTATTGAAGATCATATTCAATCAGAAAACAGCATTAGCTGCAGGGCTTTACCAACATCAACAGCATTAGAGGATCAGCTTGATTGGTGGATGACATTCTTAGATCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

233

Amino Acids

26.87

Weight (kDa)

9.29

Isoelectric Point (pI)

72.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 9 - 56 5.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 12 - 72 9.8e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 62 - 105 3.5e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 96
AciI CCGC 2 cut(s) 132, 319
AclWI GGATC 1 cut(s) 672
AcyI GRCGYC 2 cut(s) 97, 322
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 599, 611
AluBI AGCT 4 cut(s) 113, 141, 630, 670
AluI AGCT 4 cut(s) 113, 141, 630, 670
AlwI GGATC 1 cut(s) 672
ApeKI GCWGC 2 cut(s) 113, 630
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 7, 36
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 3 cut(s) 358, 477, 486
AsuII TTCGAA 1 cut(s) 553
AvaII GGWCC 2 cut(s) 7, 36
BanI GGYRCC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 274
BbvI GCAGC 2 cut(s) 100, 617
BccI CCATC 3 cut(s) 87, 147, 362
BcnI CCSGG 1 cut(s) 276
BfmI CTRYAG 3 cut(s) 114, 142, 631
BfoI RGCGCY 1 cut(s) 100
BglII AGATCT 1 cut(s) 211
BisI GCNGC 3 cut(s) 114, 320, 631
BlsI GCNGC 3 cut(s) 115, 321, 632
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 2 cut(s) 7, 36
BmgT120I GGNCC 2 cut(s) 7, 36
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 93
Bpu14I TTCGAA 1 cut(s) 553
BpuMI CCSGG 1 cut(s) 276
Bsa29I ATCGAT 1 cut(s) 697
BsaHI GRCGYC 2 cut(s) 97, 322
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 10, 393
BseCI ATCGAT 1 cut(s) 697
BseGI GGATG 1 cut(s) 687
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 2 cut(s) 10, 393
BseRI GAGGAG 5 cut(s) 201, 206, 551, 554, 557
BseXI GCAGC 2 cut(s) 100, 617
BshNI GGYRCC 1 cut(s) 96
BshVI ATCGAT 1 cut(s) 697
BsiSI CCGG 2 cut(s) 173, 275
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 341
Bsp119I TTCGAA 1 cut(s) 553
Bsp143I GATC 6 cut(s) 211, 430, 514, 601, 664, 694
BspACI CCGC 2 cut(s) 132, 319
BspCNI CTCAG 1 cut(s) 51
BspDI ATCGAT 1 cut(s) 697
BspLI GGNNCC 1 cut(s) 98
BspMAI CTGCAG 2 cut(s) 118, 635
BspPI GGATC 1 cut(s) 672
BspQI GCTCTTC 1 cut(s) 131
BspT104I TTCGAA 1 cut(s) 553
BspT107I GGYRCC 1 cut(s) 96
BsrI ACTGG 2 cut(s) 10, 393
BssMI GATC 6 cut(s) 211, 430, 514, 601, 664, 694
BssNI GRCGYC 2 cut(s) 97, 322
Bst6I CTCTTC 2 cut(s) 19, 131
BstACI GRCGYC 2 cut(s) 97, 322
BstAPI GCANNNNNTGC 1 cut(s) 630
BstBI TTCGAA 1 cut(s) 553
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 4 cut(s) 59, 149, 362, 691
BstF5I GGATG 1 cut(s) 687
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 6 cut(s) 214, 433, 517, 604, 667, 697
BstMBI GATC 6 cut(s) 211, 430, 514, 601, 664, 694
BstMWI GCNNNNNNNGC 2 cut(s) 138, 630
BstSCI CCNGG 1 cut(s) 274
BstSFI CTRYAG 3 cut(s) 114, 142, 631
BstV1I GCAGC 2 cut(s) 100, 617
BstV2I GAAGAC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
Bsu15I ATCGAT 1 cut(s) 697
BsuTUI ATCGAT 1 cut(s) 697
BtsCI GGATG 1 cut(s) 687
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 118
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 7, 36
ClaI ATCGAT 1 cut(s) 697
CseI GACGC 2 cut(s) 311, 471
CspCI CAANNNNNGTGG 2 cut(s) 324, 359
CviAII CATG 2 cut(s) 80, 460
DdeI CTNAG 4 cut(s) 59, 149, 362, 691
DinI GGCGCC 1 cut(s) 98
DpnI GATC 6 cut(s) 213, 432, 516, 603, 666, 696
DpnII GATC 6 cut(s) 211, 430, 514, 601, 664, 694
Eam1104I CTCTTC 2 cut(s) 19, 131
EarI CTCTTC 2 cut(s) 19, 131
Eco47I GGWCC 2 cut(s) 7, 36
EgeI GGCGCC 1 cut(s) 98
EheI GGCGCC 1 cut(s) 98
FaeI CATG 2 cut(s) 83, 463
FaiI YATR 7 cut(s) 41, 81, 179, 222, 359, 461, 606
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FaqI GGGAC 1 cut(s) 341
FatI CATG 2 cut(s) 79, 459
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 3 cut(s) 114, 320, 631
FokI GGATG 1 cut(s) 694
Fsp4HI GCNGC 3 cut(s) 114, 320, 631
GlaI GCGC 1 cut(s) 98
GluI GCNGC 3 cut(s) 114, 320, 631
GsuI CTGGAG 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 100
HapII CCGG 2 cut(s) 173, 275
HgaI GACGC 2 cut(s) 311, 471
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 2 cut(s) 97, 322
Hin1II CATG 2 cut(s) 83, 463
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 2 cut(s) 103, 436
HpaII CCGG 2 cut(s) 173, 275
HphI GGTGA 3 cut(s) 358, 477, 486
Hpy166II GTNNAC 2 cut(s) 36, 398
Hpy188I TCNGA 5 cut(s) 60, 168, 428, 435, 616
Hpy188III TCNNGA 2 cut(s) 326, 388
Hpy8I GTNNAC 2 cut(s) 36, 398
Hpy99I CGWCG 1 cut(s) 327
HpyAV CCTTC 2 cut(s) 80, 372
HpyCH4V TGCA 3 cut(s) 74, 116, 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 630
HpyF3I CTNAG 4 cut(s) 59, 149, 362, 691
Hsp92I GRCGYC 2 cut(s) 97, 322
Hsp92II CATG 2 cut(s) 83, 463
HspAI GCGC 1 cut(s) 97
KasI GGCGCC 1 cut(s) 96
Kzo9I GATC 6 cut(s) 211, 430, 514, 601, 664, 694
LguI GCTCTTC 1 cut(s) 131
Lsp1109I GCAGC 2 cut(s) 100, 617
LweI GCATC 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 483
MalI GATC 6 cut(s) 213, 432, 516, 603, 666, 696
MboI GATC 6 cut(s) 211, 430, 514, 601, 664, 694
MboII GAAGA 9 cut(s) 36, 47, 56, 59, 102, 148, 279, 291, 611
MflI RGATCY 1 cut(s) 211
MluCI AATT 2 cut(s) 160, 510
Mly113I GGCGCC 1 cut(s) 97
MlyI GAGTC 1 cut(s) 445
MseI TTAA 4 cut(s) 122, 383, 422, 443
MslI CAYNNNNRTG 1 cut(s) 458
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 2 cut(s) 173, 275
MspR9I CCNGG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 138, 630
NarI GGCGCC 1 cut(s) 97
NciI CCSGG 1 cut(s) 276
NdeII GATC 6 cut(s) 211, 430, 514, 601, 664, 694
NlaIII CATG 2 cut(s) 83, 463
NlaIV GGNNCC 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 483
NspV TTCGAA 1 cut(s) 553
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 103
PfoI TCCNGGA 1 cut(s) 274
PkrI GCNGC 3 cut(s) 115, 321, 632
PleI GAGTC 1 cut(s) 444
PluTI GGCGCC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 2 cut(s) 7, 36
PstI CTGCAG 2 cut(s) 118, 635
PsuI RGATCY 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 458
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 4 cut(s) 122, 383, 422, 443
SatI GCNGC 3 cut(s) 114, 320, 631
Sau3AI GATC 6 cut(s) 211, 430, 514, 601, 664, 694
Sau96I GGNCC 2 cut(s) 7, 36
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 276
SfaNI GCATC 1 cut(s) 119
SfcI CTRYAG 3 cut(s) 114, 142, 631
SfoI GGCGCC 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 553
SinI GGWCC 2 cut(s) 7, 36
SmiMI CAYNNNNRTG 1 cut(s) 458
Sse9I AATT 2 cut(s) 160, 510
SsiI CCGC 2 cut(s) 132, 319
SspDI GGCGCC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 274
TaqI TCGA 4 cut(s) 195, 389, 553, 697
TasI AATT 2 cut(s) 160, 510
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 4 cut(s) 122, 383, 422, 443
Tru9I TTAA 4 cut(s) 122, 383, 422, 443
TscAI CASTG 1 cut(s) 71
TseFI GTSAC 1 cut(s) 483
TseI GCWGC 2 cut(s) 113, 630
Tsp45I GTSAC 1 cut(s) 483
TspDTI ATGAA 1 cut(s) 219
TspRI CASTG 1 cut(s) 71
VpaK11BI GGWCC 2 cut(s) 7, 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.