Rh7DG216200
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003639
Physical Location & Seq
Reverse (-)
20839950 .. 20843245
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG216200.1

Sequence Viewer

Length: 453 bp
ATGTGCCAATGGGATGTTATGTTTTCAGACTGTCAATCTAAAGTTGAATTGTCGAACTTGTGTAGGTGGTCGTTGATTGCGGGGAGACTCCCAGGCCGAACAGACAATGAAATAAAGAACTACTGGAATTCACATTTGAGCAAGAAAATAAAGCAGAAGAATGAGAAAGCTACATTGGCTTCGGCAGCGCAAGAGACTAGTACCACTAGTACTACGACCACTACTCCTCCCCAGAAGGCATTAAACGAGACAAGTAGTGTTCCAGCAGACAAAGACGAAGAAGAACGAGTAAAGTTAGGAACAAGTTCGGATGGTAACTTCGATGTGAACGAGTTCTTTGACTTCTCCACTGAAGGCTCGTATGGGTTGGAGTGGGTGAACAAGTTTCTTGAGCTTGATGAAGACCCCATGGCTGCTGCTTACAGAGAAAATAACAAGGTGAGCATTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

150

Amino Acids

16.89

Weight (kDa)

4.78

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 22 - 46 2.8e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 2 cut(s) 202, 211
AgsI TTSAA 1 cut(s) 47
AhlI ACTAGT 2 cut(s) 197, 206
AjnI CCWGG 1 cut(s) 91
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 2 cut(s) 170, 394
AluI AGCT 2 cut(s) 170, 394
Alw26I GTCTC 3 cut(s) 79, 188, 242
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 3 cut(s) 185, 413, 416
ApoI RAATTY 1 cut(s) 127
Asp700I GAANNNNTTC 2 cut(s) 304, 332
AspLEI GCGC 1 cut(s) 190
AsuHPI GGTGA 2 cut(s) 388, 451
BbsI GAAGAC 1 cut(s) 408
BbvI GCAGC 3 cut(s) 197, 400, 403
BccI CCATC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 93
BcoDI GTCTC 3 cut(s) 79, 188, 242
BcuI ACTAGT 2 cut(s) 197, 206
BfaI CTAG 2 cut(s) 198, 207
BisI GCNGC 3 cut(s) 186, 414, 417
BlsI GCNGC 3 cut(s) 187, 415, 418
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 410
BsaJI CCNNGG 2 cut(s) 91, 408
BsaXI ACNNNNNCTCC 4 cut(s) 208, 211, 238, 241
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 91, 408
BseGI GGATG 2 cut(s) 19, 316
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 3 cut(s) 197, 400, 403
BshFI GGCC 1 cut(s) 96
BsmAI GTCTC 3 cut(s) 79, 188, 242
BsnI GGCC 1 cut(s) 96
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 1 cut(s) 80
BspANI GGCC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 91, 408
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 2 cut(s) 19, 316
BstHHI GCGC 1 cut(s) 190
BstMAI GTCTC 3 cut(s) 79, 188, 242
BstMWI GCNNNNNNNGC 2 cut(s) 176, 185
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstV1I GCAGC 3 cut(s) 197, 400, 403
BstV2I GAAGAC 1 cut(s) 408
BsuRI GGCC 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 408
BtsCI GGATG 2 cut(s) 19, 316
BtsIMutI CAGTG 1 cut(s) 348
CfoI GCGC 1 cut(s) 190
Csp6I GTAC 2 cut(s) 201, 210
CviAII CATG 1 cut(s) 409
CviJI RGCY 6 cut(s) 96, 170, 179, 357, 394, 413
CviKI_1 RGCY 6 cut(s) 96, 170, 179, 357, 394, 413
CviQI GTAC 2 cut(s) 201, 210
Eco130I CCWWGG 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 1 cut(s) 412
FaiI YATR 3 cut(s) 20, 363, 410
FatI CATG 1 cut(s) 408
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 186, 414, 417
FokI GGATG 2 cut(s) 26, 323
Fsp4HI GCNGC 3 cut(s) 186, 414, 417
FspBI CTAG 2 cut(s) 198, 207
GlaI GCGC 1 cut(s) 189
GluI GCNGC 3 cut(s) 186, 414, 417
HaeIII GGCC 1 cut(s) 96
HhaI GCGC 1 cut(s) 190
Hin1II CATG 1 cut(s) 412
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 1 cut(s) 87
HphI GGTGA 2 cut(s) 388, 451
Hpy166II GTNNAC 2 cut(s) 328, 379
Hpy188I TCNGA 2 cut(s) 28, 310
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 2 cut(s) 328, 379
HpyAV CCTTC 2 cut(s) 229, 347
HpyCH4III ACNGT 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 185
Hsp92II CATG 1 cut(s) 412
HspAI GCGC 1 cut(s) 188
LpnPI CCDG 5 cut(s) 78, 105, 109, 245, 276
Lsp1109I GCAGC 3 cut(s) 197, 400, 403
MaeI CTAG 2 cut(s) 198, 207
MaeIII GTNAC 1 cut(s) 314
MboII GAAGA 4 cut(s) 169, 290, 293, 413
MluCI AATT 2 cut(s) 47, 127
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 1 cut(s) 237
MroXI GAANNNNTTC 2 cut(s) 304, 332
MseI TTAA 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 176, 185
NcoI CCATGG 1 cut(s) 408
NlaIII CATG 1 cut(s) 412
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PdmI GAANNNNTTC 2 cut(s) 304, 332
PkrI GCNGC 3 cut(s) 187, 415, 418
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
RsaI GTAC 2 cut(s) 202, 211
RsaNI GTAC 2 cut(s) 201, 210
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 3 cut(s) 186, 414, 417
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 93
SetI ASST 4 cut(s) 68, 172, 396, 441
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SpeI ACTAGT 2 cut(s) 197, 206
Sse9I AATT 2 cut(s) 47, 127
SsiI CCGC 1 cut(s) 80
SspMI CTAG 2 cut(s) 198, 207
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 2 cut(s) 53, 321
TasI AATT 2 cut(s) 47, 127
TatI WGTACW 1 cut(s) 209
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 1 cut(s) 355
TseI GCWGC 3 cut(s) 185, 413, 416
TspDTI ATGAA 2 cut(s) 123, 414
TspRI CASTG 1 cut(s) 355
XapI RAATTY 1 cut(s) 127
XmnI GAANNNNTTC 2 cut(s) 304, 332
XspI CTAG 2 cut(s) 198, 207
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.