RLG00000003500
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003639
Physical Location & Seq
Forward (+)
49296374 .. 49298901
2528 bp
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UTR
Exon/CDS
Intron
RLM00000003500

Sequence Viewer

Length: 684 bp
ATGGCTCCAAAGAACGACGGATCCACAAAAAAGGTCATGAACAAAGGAGCCTGGACTGCAGAAGAAGATAGAAAACTTGCAGAGTACATTGAAATCCATGGTGCCAAGAGGTGGAAGACTGTGGCTTACATAGCAGGTTTGAATCGATGTGGAAAGAGCTGCAGACTGAGATGGTTGAACTACCTGAGACCGAATATCAAGAGAGGAAACATATCTGATGATGAAGAGGACTTGATACTTCGTCTTCATAAGCTACTCGGAAACAGGTGGTCGTTGATTGCGGGGAGACTCCCAGGCCGAACAGACAATGAAATAAAGAACTACTGGAATTCACATTTGAGCAAGAAAATAAAGCAGAAGAATGAGAAAGCTACATTGGCTTCGACAGCGCAAGAGACTAGTACCACTAGTACCACGACCACTACTCCCCAGAAGGCATTAAACGAGACCAGTAGTGCTCCAGCAGACAAAGACGAAGAAGAACGAGTAAAGTTAGGAACAAGTTCGGATGGTAACTTCGATGTGAACGAGTTCTTTGACTTCTCCACTGAAGGCTCGTATGGGTTGGAGTGGGTGAACAAGTTTCTTGAGCTTGATGAAGACCCCATGGCTGCTGCTTACAGAGAAAATAATAAGGCAATGCCCAAGGAAAGCCAGAGTCAACATAGATCTAAGTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

228

Amino Acids

25.77

Weight (kDa)

8.82

Isoelectric Point (pI)

55.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 3.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 77 1.7e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 113 1.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 120 1.8e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 111
AciI CCGC 1 cut(s) 281
AclWI GGATC 2 cut(s) 15, 28
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 3 cut(s) 86, 403, 412
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 3 cut(s) 92, 142, 178
AhlI ACTAGT 2 cut(s) 398, 407
AjnI CCWGG 2 cut(s) 50, 292
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 4 cut(s) 159, 253, 371, 592
AluI AGCT 4 cut(s) 159, 253, 371, 592
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 4 cut(s) 181, 280, 389, 440
AlwI GGATC 2 cut(s) 15, 28
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 3 cut(s) 159, 611, 614
ApoI RAATTY 1 cut(s) 328
Asp700I GAANNNNTTC 2 cut(s) 502, 530
AspLEI GCGC 1 cut(s) 391
AsuHPI GGTGA 1 cut(s) 586
BaeGI GKGCMC 1 cut(s) 680
BamHI GGATCC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 101
BbsI GAAGAC 3 cut(s) 122, 236, 606
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 3 cut(s) 146, 598, 601
BccI CCATC 2 cut(s) 165, 503
BciT130I CCWGG 2 cut(s) 52, 294
BcoDI GTCTC 4 cut(s) 181, 280, 389, 440
BcuI ACTAGT 2 cut(s) 398, 407
BfaI CTAG 2 cut(s) 399, 408
BfmI CTRYAG 2 cut(s) 57, 160
BfuAI ACCTGC 1 cut(s) 125
BglII AGATCT 1 cut(s) 668
BisI GCNGC 3 cut(s) 160, 612, 615
BlsI GCNGC 3 cut(s) 161, 613, 616
Bme1390I CCNGG 2 cut(s) 52, 294
BmiI GGNNCC 4 cut(s) 6, 22, 49, 103
BmrFI CCNGG 2 cut(s) 52, 294
BpiI GAAGAC 3 cut(s) 122, 236, 606
BpmI CTGGAG 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 608
Bsa29I ATCGAT 1 cut(s) 145
BsaI GGTCTC 2 cut(s) 181, 440
BsaJI CCNNGG 4 cut(s) 97, 292, 606, 645
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 2 cut(s) 329, 450
Bse3DI GCAATG 1 cut(s) 645
BseBI CCWGG 2 cut(s) 52, 294
BseCI ATCGAT 1 cut(s) 145
BseDI CCNNGG 4 cut(s) 97, 292, 606, 645
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 2 cut(s) 158, 176
BseNI ACTGG 2 cut(s) 329, 450
BseSI GKGCMC 1 cut(s) 680
BseXI GCAGC 3 cut(s) 146, 598, 601
BshFI GGCC 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 460
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 4 cut(s) 181, 280, 389, 440
BsnI GGCC 1 cut(s) 297
Bso31I GGTCTC 2 cut(s) 181, 440
Bsp1286I GDGCHC 2 cut(s) 460, 680
Bsp143I GATC 2 cut(s) 20, 668
Bsp19I CCATGG 2 cut(s) 97, 606
BspACI CCGC 1 cut(s) 281
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 2 cut(s) 159, 177
BspDI ATCGAT 1 cut(s) 145
BspHI TCATGA 1 cut(s) 36
BspLI GGNNCC 4 cut(s) 6, 22, 49, 103
BspMAI CTGCAG 2 cut(s) 61, 164
BspMI ACCTGC 1 cut(s) 125
BspPI GGATC 2 cut(s) 15, 28
BspT107I GGYRCC 1 cut(s) 101
BspTNI GGTCTC 2 cut(s) 181, 440
BsrDI GCAATG 1 cut(s) 645
BsrI ACTGG 2 cut(s) 329, 450
BssECI CCNNGG 4 cut(s) 97, 292, 606, 645
BssMI GATC 2 cut(s) 20, 668
BssT1I CCWWGG 3 cut(s) 97, 606, 645
Bst2UI CCWGG 2 cut(s) 52, 294
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 219
BstDEI CTNAG 3 cut(s) 167, 185, 672
BstDSI CCRYGG 2 cut(s) 97, 606
BstF5I GGATG 1 cut(s) 514
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 2 cut(s) 23, 671
BstMAI GTCTC 4 cut(s) 181, 280, 389, 440
BstMBI GATC 2 cut(s) 20, 668
BstMWI GCNNNNNNNGC 4 cut(s) 56, 131, 377, 386
BstNI CCWGG 2 cut(s) 52, 294
BstSCI CCNGG 2 cut(s) 50, 292
BstSFI CTRYAG 2 cut(s) 57, 160
BstSLI GKGCMC 1 cut(s) 680
BstV1I GCAGC 3 cut(s) 146, 598, 601
BstV2I GAAGAC 3 cut(s) 122, 236, 606
BstX2I RGATCY 2 cut(s) 20, 668
BstYI RGATCY 2 cut(s) 20, 668
Bsu15I ATCGAT 1 cut(s) 145
BsuRI GGCC 1 cut(s) 297
BsuTUI ATCGAT 1 cut(s) 145
BtgI CCRYGG 2 cut(s) 97, 606
BtsCI GGATG 1 cut(s) 514
BtsIMutI CAGTG 1 cut(s) 546
BveI ACCTGC 1 cut(s) 125
CciI TCATGA 1 cut(s) 36
CfoI GCGC 1 cut(s) 391
ClaI ATCGAT 1 cut(s) 145
Csp6I GTAC 3 cut(s) 85, 402, 411
CviAII CATG 3 cut(s) 37, 98, 607
CviQI GTAC 3 cut(s) 85, 402, 411
DdeI CTNAG 3 cut(s) 167, 185, 672
DpnI GATC 2 cut(s) 22, 670
DpnII GATC 2 cut(s) 20, 668
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 3 cut(s) 97, 606, 645
Eco31I GGTCTC 2 cut(s) 181, 440
Eco57I CTGAAG 1 cut(s) 570
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 50, 292
EcoT14I CCWWGG 3 cut(s) 97, 606, 645
ErhI CCWWGG 3 cut(s) 97, 606, 645
FaeI CATG 3 cut(s) 40, 101, 610
FaiI YATR 8 cut(s) 38, 99, 131, 212, 249, 561, 608, 666
FatI CATG 3 cut(s) 36, 97, 606
FauI CCCGC 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 160, 612, 615
FokI GGATG 1 cut(s) 521
Fsp4HI GCNGC 3 cut(s) 160, 612, 615
FspBI CTAG 2 cut(s) 399, 408
GlaI GCGC 1 cut(s) 390
GluI GCNGC 3 cut(s) 160, 612, 615
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 1 cut(s) 297
HhaI GCGC 1 cut(s) 391
Hin1II CATG 3 cut(s) 40, 101, 610
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HincII GTYRAC 1 cut(s) 662
HindII GTYRAC 1 cut(s) 662
HinfI GANTC 3 cut(s) 142, 288, 658
HphI GGTGA 1 cut(s) 586
Hpy166II GTNNAC 3 cut(s) 526, 577, 662
Hpy188I TCNGA 3 cut(s) 217, 260, 508
Hpy188III TCNNGA 3 cut(s) 37, 199, 587
Hpy8I GTNNAC 3 cut(s) 526, 577, 662
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 427, 545
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 3 cut(s) 59, 80, 162
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 131, 377, 386
HpyF3I CTNAG 3 cut(s) 167, 185, 672
Hsp92II CATG 3 cut(s) 40, 101, 610
HspAI GCGC 1 cut(s) 389
Kzo9I GATC 2 cut(s) 20, 668
LmnI GCTCC 3 cut(s) 10, 47, 463
Lsp1109I GCAGC 3 cut(s) 146, 598, 601
MaeI CTAG 2 cut(s) 399, 408
MaeIII GTNAC 1 cut(s) 512
MalI GATC 2 cut(s) 22, 670
MboI GATC 2 cut(s) 20, 668
MboII GAAGA 9 cut(s) 74, 77, 127, 236, 236, 370, 488, 491, 611
MflI RGATCY 2 cut(s) 20, 668
MhlI GDGCHC 2 cut(s) 460, 680
MluCI AATT 1 cut(s) 328
MlyI GAGTC 2 cut(s) 282, 667
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 3 cut(s) 102, 197, 220
MroXI GAANNNNTTC 2 cut(s) 502, 530
MseI TTAA 2 cut(s) 440, 682
MspR9I CCNGG 2 cut(s) 52, 294
MvaI CCWGG 2 cut(s) 52, 294
MwoI GCNNNNNNNGC 4 cut(s) 56, 131, 377, 386
NcoI CCATGG 2 cut(s) 97, 606
NdeII GATC 2 cut(s) 20, 668
NlaIII CATG 3 cut(s) 40, 101, 610
NlaIV GGNNCC 4 cut(s) 6, 22, 49, 103
PagI TCATGA 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 525
PdmI GAANNNNTTC 2 cut(s) 502, 530
PfeI GAWTC 1 cut(s) 142
PflMI CCANNNNNTGG 1 cut(s) 111
PkrI GCNGC 3 cut(s) 161, 613, 616
PleI GAGTC 2 cut(s) 282, 666
PpsI GAGTC 2 cut(s) 282, 666
Psp6I CCWGG 2 cut(s) 50, 292
PspGI CCWGG 2 cut(s) 50, 292
PspN4I GGNNCC 4 cut(s) 6, 22, 49, 103
PstI CTGCAG 2 cut(s) 61, 164
PsuI RGATCY 2 cut(s) 20, 668
RsaI GTAC 3 cut(s) 86, 403, 412
RsaNI GTAC 3 cut(s) 85, 402, 411
SaqAI TTAA 2 cut(s) 440, 682
SatI GCNGC 3 cut(s) 160, 612, 615
Sau3AI GATC 2 cut(s) 20, 668
SchI GAGTC 2 cut(s) 282, 667
ScrFI CCNGG 2 cut(s) 52, 294
SduI GDGCHC 2 cut(s) 460, 680
SetI ASST 9 cut(s) 36, 113, 139, 161, 186, 255, 269, 373, 594
SfcI CTRYAG 2 cut(s) 57, 160
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
SpeI ACTAGT 2 cut(s) 398, 407
Sse9I AATT 1 cut(s) 328
SsiI CCGC 1 cut(s) 281
SspMI CTAG 2 cut(s) 399, 408
StyD4I CCNGG 2 cut(s) 50, 292
StyI CCWWGG 3 cut(s) 97, 606, 645
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 3 cut(s) 145, 383, 519
TaqII GACCGA 1 cut(s) 205
TasI AATT 1 cut(s) 328
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 2 cut(s) 440, 682
Tru9I TTAA 2 cut(s) 440, 682
TscAI CASTG 1 cut(s) 553
TseI GCWGC 3 cut(s) 159, 611, 614
TspDTI ATGAA 5 cut(s) 53, 236, 237, 324, 612
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 553
Van91I CCANNNNNTGG 1 cut(s) 111
XapI RAATTY 1 cut(s) 328
XmnI GAANNNNTTC 2 cut(s) 502, 530
XspI CTAG 2 cut(s) 399, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.