MD06G1053100.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0003639
Physical Location & Seq
Reverse (-)
7745001 .. 7746229
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1053100.v1.1.491

Sequence Viewer

Length: 624 bp
ATGGCTCCAAAGAACGACGCGTCAACAAAAAAGCTTATGAGCAAAGGACCATGGACAGGAGAGGAAGATAGAAAACTTGCAGAATATATTGAAATTCATGGTGCAAAGAGGTGGAAGACAGTTGCTTCGATAGCAGGTTTGAATCGTTGCGGGAAGAGTTGCAGGTTGAGATGGTTGAACTATTTGAGACCCAATATTAAGAGAGGCAACATTTCTGATGATGAAGAGGACTTGATACTTAGGCTTCATAAACTACTAGGAAACAGGTGGTCATTGATTGCCGGGAGACTTCCAGGCCGAACAGACAATGAAATAAAAAATTACTGGAATTCTCATTTGAGCAAGAAAATAAATCAGAAGGAAAAGACATCGCTCGCTTCAACAGCCCAAGAGACAATGACGACTATTACTGCAATTGCACCTTCCCAGAAAGCATCAGACAATAGCGCCGATACTACAACTACACCTTCCCAGAAAGCATCAGACGATAGCGCTGATACGAACTTTGATGTGAATGAGTTCTTTGACTTCTCTGCTGAAGGTTCTTATGGGTTGGAGTGGGTGAACAAGTTTCTCGAGCTTGATGAAGACACCATGGCTGCCCAAGAAAAGGTCATTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

208

Amino Acids

23.29

Weight (kDa)

6.85

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 1.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 76 5e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 113 1.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 121 1.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 125, 153
AccII CGCG 1 cut(s) 20
AciI CCGC 1 cut(s) 150
AcsI RAATTY 2 cut(s) 93, 328
AcuI CTGAAG 1 cut(s) 558
AfeI AGCGCT 1 cut(s) 493
AfiI CCNNNNNNNGG 2 cut(s) 56, 610
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 4 cut(s) 92, 142, 178, 381
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 2 cut(s) 34, 580
AluI AGCT 2 cut(s) 34, 580
Alw26I GTCTC 3 cut(s) 181, 280, 386
Ama87I CYCGRG 1 cut(s) 575
Aor51HI AGCGCT 1 cut(s) 493
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 599
ApoI RAATTY 2 cut(s) 93, 328
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
Asp700I GAANNNNTTC 1 cut(s) 518
AspLEI GCGC 2 cut(s) 449, 494
AspS9I GGNCC 1 cut(s) 47
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 574
AvaI CYCGRG 1 cut(s) 575
AvaII GGWCC 1 cut(s) 47
BbsI GAAGAC 2 cut(s) 122, 594
BbvI GCAGC 1 cut(s) 586
BccI CCATC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 294
BcnI CCSGG 1 cut(s) 283
BcoDI GTCTC 3 cut(s) 181, 280, 386
BfaI CTAG 1 cut(s) 257
BfoI RGCGCY 2 cut(s) 450, 495
BfuAI ACCTGC 2 cut(s) 125, 153
BisI GCNGC 1 cut(s) 600
BlsI GCNGC 1 cut(s) 601
Bme1390I CCNGG 2 cut(s) 283, 294
Bme18I GGWCC 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 575
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 283, 294
BmsI GCATC 2 cut(s) 443, 488
BpiI GAAGAC 2 cut(s) 122, 594
BpuMI CCSGG 1 cut(s) 283
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 2 cut(s) 50, 594
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 610
Bse1I ACTGG 1 cut(s) 329
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 50, 594
BseLI CCNNNNNNNGG 2 cut(s) 56, 610
BseNI ACTGG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 586
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 1 cut(s) 297
BsiHKCI CYCGRG 1 cut(s) 575
BsiSI CCGG 1 cut(s) 282
BslI CCNNNNNNNGG 2 cut(s) 56, 610
BsmAI GTCTC 3 cut(s) 181, 280, 386
BsnI GGCC 1 cut(s) 297
Bso31I GGTCTC 1 cut(s) 181
BsoBI CYCGRG 1 cut(s) 575
Bsp19I CCATGG 2 cut(s) 50, 594
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 297
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 2 cut(s) 125, 153
BspTNI GGTCTC 1 cut(s) 181
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 50, 594
BssT1I CCWWGG 2 cut(s) 50, 594
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 2 cut(s) 149, 219
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 1 cut(s) 239
BstDSI CCRYGG 2 cut(s) 50, 594
BstFNI CGCG 1 cut(s) 20
BstH2I RGCGCY 2 cut(s) 450, 495
BstHHI GCGC 2 cut(s) 449, 494
BstMAI GTCTC 3 cut(s) 181, 280, 386
BstMWI GCNNNNNNNGC 2 cut(s) 131, 383
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 281, 292
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 586
BstV2I GAAGAC 2 cut(s) 122, 594
BsuRI GGCC 1 cut(s) 297
BtgI CCRYGG 2 cut(s) 50, 594
BtgZI GCGATG 1 cut(s) 354
BveI ACCTGC 2 cut(s) 125, 153
Cac8I GCNNGC 1 cut(s) 375
CfoI GCGC 2 cut(s) 449, 494
Cfr13I GGNCC 1 cut(s) 47
CseI GACGC 2 cut(s) 9, 26
CviAII CATG 3 cut(s) 51, 98, 595
CviJI RGCY 7 cut(s) 5, 34, 244, 297, 386, 580, 599
CviKI_1 RGCY 7 cut(s) 5, 34, 244, 297, 386, 580, 599
DdeI CTNAG 1 cut(s) 239
Eam1104I CTCTTC 2 cut(s) 149, 219
EarI CTCTTC 2 cut(s) 149, 219
Eco130I CCWWGG 2 cut(s) 50, 594
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 47
Eco47III AGCGCT 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 575
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 2 cut(s) 50, 594
ErhI CCWWGG 2 cut(s) 50, 594
FaeI CATG 3 cut(s) 54, 101, 598
FaiI YATR 7 cut(s) 38, 52, 87, 99, 249, 549, 596
FatI CATG 3 cut(s) 50, 97, 594
FauI CCCGC 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 600
Fsp4HI GCNGC 1 cut(s) 600
FspBI CTAG 1 cut(s) 257
GlaI GCGC 2 cut(s) 448, 493
GluI GCNGC 1 cut(s) 600
HaeII RGCGCY 2 cut(s) 450, 495
HaeIII GGCC 1 cut(s) 297
HapII CCGG 1 cut(s) 282
HgaI GACGC 2 cut(s) 9, 26
HhaI GCGC 2 cut(s) 449, 494
Hin1II CATG 3 cut(s) 54, 101, 598
Hin6I GCGC 2 cut(s) 447, 492
HinP1I GCGC 2 cut(s) 447, 492
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 574
Hpy166II GTNNAC 2 cut(s) 24, 565
Hpy188I TCNGA 4 cut(s) 217, 357, 439, 484
Hpy188III TCNNGA 1 cut(s) 575
Hpy8I GTNNAC 2 cut(s) 24, 565
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 4 cut(s) 352, 432, 477, 533
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 5 cut(s) 80, 104, 162, 413, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 383
HpyF3I CTNAG 1 cut(s) 239
Hsp92II CATG 3 cut(s) 54, 101, 598
HspAI GCGC 2 cut(s) 447, 492
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 1 cut(s) 586
LweI GCATC 2 cut(s) 443, 488
MaeI CTAG 1 cut(s) 257
MboII GAAGA 5 cut(s) 77, 127, 166, 236, 599
MfeI CAATTG 1 cut(s) 414
MluCI AATT 4 cut(s) 93, 319, 328, 414
MluI ACGCGT 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 534
MnlI CCTC 4 cut(s) 55, 102, 197, 220
MroXI GAANNNNTTC 1 cut(s) 518
MseI TTAA 1 cut(s) 198
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 2 cut(s) 283, 294
MunI CAATTG 1 cut(s) 414
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 131, 383
NciI CCSGG 1 cut(s) 283
NcoI CCATGG 2 cut(s) 50, 594
NlaIII CATG 3 cut(s) 54, 101, 598
NlaIV GGNNCC 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 575
PdmI GAANNNNTTC 1 cut(s) 518
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 1 cut(s) 601
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 600
Sau96I GGNCC 1 cut(s) 47
ScrFI CCNGG 2 cut(s) 283, 294
SfaNI GCATC 2 cut(s) 443, 488
Sfr274I CTCGAG 1 cut(s) 575
SinI GGWCC 1 cut(s) 47
SlaI CTCGAG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
Sse9I AATT 4 cut(s) 93, 319, 328, 414
SsiI CCGC 1 cut(s) 150
SspI AATATT 1 cut(s) 196
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 2 cut(s) 281, 292
StyI CCWWGG 2 cut(s) 50, 594
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 2 cut(s) 128, 576
TasI AATT 4 cut(s) 93, 319, 328, 414
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseI GCWGC 1 cut(s) 599
TspDTI ATGAA 5 cut(s) 86, 236, 237, 324, 600
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 2 cut(s) 93, 328
XhoI CTCGAG 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 518
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.