Rorug07G0079300
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003639
Physical Location & Seq
Forward (+)
6180508 .. 6182843
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0079300.1

Sequence Viewer

Length: 1473 bp
ATGGCTCCGCCCCTGTTTGTGTATGTCCAGACTTCAAAAAAAGGTGGCAAGAAAAGAAAAAAGCAAAAAAAGAGTATAGAGGCAGTTGTTATTGCTATTAATAGGGAAGAAAGGAATTCAGGAATAAGAATTTCGGATGGAGGTTCTAATAACTCACATAGGGAATCACATACTCCAGCACCTAATAGTCCAATTAGGTGTGAAAATGAGACAACCTCAGATTATTCGAAGAGACCTCTAAGGGACAAAGCAAAGGGGGATAATAAAGATTTTAAGAACAAGGGTCGGGTTGAAGTTCAGTTCAATGTCAGAGGTCAGCCTTATGGGGAATATGCAGCAGGGTTCTCCTCCTTCCTTGGAGTCACAACAAGAGAGTTCGTACCATTGACAACTGAGTGGAAAAACCTCACTGATAAGTACAAAATACAAATTTGGGAACATATCATGCAAAAATATATTGTTCCAGAAATTTGCAAAAGAAATGTGTTCCATAAAATGATGAAGCTTTGGCGAGATTACAGATCATTGACAATGAAAGAAGTGATGCAGCAAGCTGAATCGGTAGGCTTACCACGTGCTGCTGCCCTCCTCAAACCTGATAATATAGATTCAATGGAAGTGTGGTTGGATTTTGTAAAATCCAGAACCACAGAAGCATTTAGGGAAAAGTGTGAAAGATTCAGGTTGATGCGACAAGGCAGAACCTTATTGCATAGAACAAGTAGAAAGAGTTTTGCATGTCTTGAAGAAGAGCTGAAACTAGTACGAAAGTACAAGGAAGAAGAAGAAGTAACACAACCATGTTCGATAAAAACTGATGCTGTTGCAAAGGCACTTGGTCCTGACCCGCGAGGACGAGTTAGAGGACTTGGGTTTGGTGCACTCCCTTCAAAAGTGGATGGTCAGACACACGTTGCTAATAAGGTGGACCGATTAACAGAGTTAGTGCAAGGTCTCGTTGCTCGGCTAGACAAAGGAGAGAATGTCAATGAAAACACAAGTGTGCAACATTCTGCTAATTGGATTGCACAGAGAAAACGAAAAGAGAATCTGAACTGTTCTAGTGATATAGCACAAAGCAAGCAGAAAGATGCTAGTGTTATAAGTTCTAACAGGGAGAGGGGCAGTAGGGAGCAAATCAAAGAAAATACCTACGGAAATGAGCCACATTTGGGAAATGGTAGGCCAAAAAAGAGCCAAAAGACAGATGCAGCGGAAAAAGTGTACTTGCTAAGTTGGTTTGCTAAAGAAGAAGAAGTCGTTGCTACTGGTGGCATTTTGTCAAAAGATCCAGAAGCTTTGGTGCATCATATGCCTTTTGGCCATGATTGTTGGAAAATTTCAGTGCACGAAGTTTTTCATGATATAGCTTTGTATCGACCGACAAGTGAGTTCAATAAGCTTGATGCATCTAGAGGAAGTGTAATCGCATGGCCTGTCAAATATATCAAGATGAATTCGGCTGTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

490

Amino Acids

55.86

Weight (kDa)

9.6

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 415 - 485 5.2e-07 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1103
AccII CGCG 1 cut(s) 850
AciI CCGC 3 cut(s) 8, 848, 1214
AclWI GGATC 1 cut(s) 1283
AcoI YGGCCR 1 cut(s) 1321
AcsI RAATTY 6 cut(s) 115, 129, 429, 468, 1338, 1456
AcvI CACGTG 1 cut(s) 575
AfaI GTAC 5 cut(s) 381, 419, 765, 773, 1226
AfiI CCNNNNNNNGG 1 cut(s) 1172
AflIII ACRYGT 1 cut(s) 910
AgsI TTSAA 7 cut(s) 36, 293, 304, 612, 746, 891, 1396
AhlI ACTAGT 1 cut(s) 760
AleI CACNNNNGTG 1 cut(s) 1001
AluBI AGCT 6 cut(s) 505, 554, 754, 1298, 1370, 1402
AluI AGCT 6 cut(s) 505, 554, 754, 1298, 1370, 1402
Alw21I GWGCWC 2 cut(s) 883, 1350
Alw26I GTCTC 3 cut(s) 203, 226, 959
Alw44I GTGCAC 2 cut(s) 879, 1346
AlwI GGATC 1 cut(s) 1283
AoxI GGCC 3 cut(s) 1184, 1321, 1433
ApaLI GTGCAC 2 cut(s) 879, 1346
ApeKI GCWGC 5 cut(s) 335, 547, 578, 581, 1211
ApoI RAATTY 6 cut(s) 115, 129, 429, 468, 1338, 1456
AseI ATTAAT 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 1356
AspS9I GGNCC 2 cut(s) 839, 928
AsuII TTCGAA 1 cut(s) 227
AvaII GGWCC 2 cut(s) 839, 928
BaeGI GKGCMC 2 cut(s) 883, 1350
BalI TGGCCA 1 cut(s) 1323
BbrPI CACGTG 1 cut(s) 575
Bbv12I GWGCWC 2 cut(s) 883, 1350
BbvI GCAGC 5 cut(s) 347, 559, 565, 568, 1223
BccI CCATC 2 cut(s) 131, 893
BcoDI GTCTC 3 cut(s) 203, 226, 959
BcuI ACTAGT 1 cut(s) 760
BfaI CTAG 5 cut(s) 761, 968, 1062, 1095, 1413
BisI GCNGC 5 cut(s) 336, 548, 579, 582, 1212
BlsI GCNGC 5 cut(s) 337, 549, 580, 583, 1213
Bme18I GGWCC 2 cut(s) 839, 928
BmgT120I GGNCC 2 cut(s) 839, 928
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 8 cut(s) 534, 678, 808, 1081, 1198, 1315, 1396, 1418
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpmI CTGGAG 1 cut(s) 159
Bpu14I TTCGAA 1 cut(s) 227
BsaAI YACGTR 1 cut(s) 575
BsaI GGTCTC 2 cut(s) 226, 959
BsaJI CCNNGG 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 969, 999
Bsc4I CCNNNNNNNGG 1 cut(s) 1172
Bse1I ACTGG 1 cut(s) 1273
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 2 cut(s) 142, 904
BseLI CCNNNNNNNGG 1 cut(s) 1172
BseMII CTCAG 2 cut(s) 231, 384
BseNI ACTGG 1 cut(s) 1273
BseRI GAGGAG 2 cut(s) 337, 578
BseSI GKGCMC 2 cut(s) 883, 1350
BseXI GCAGC 5 cut(s) 347, 559, 565, 568, 1223
Bsh1236I CGCG 1 cut(s) 850
Bsh1285I CGRYCG 1 cut(s) 1382
BshFI GGCC 3 cut(s) 1186, 1323, 1435
BsiEI CGRYCG 1 cut(s) 1382
BsiHKAI GWGCWC 2 cut(s) 883, 1350
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 1172
BsmAI GTCTC 3 cut(s) 203, 226, 959
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 3 cut(s) 1186, 1323, 1435
Bso31I GGTCTC 2 cut(s) 226, 959
Bsp119I TTCGAA 1 cut(s) 227
Bsp1286I GDGCHC 2 cut(s) 883, 1350
Bsp143I GATC 2 cut(s) 521, 1288
BspACI CCGC 3 cut(s) 8, 848, 1214
BspANI GGCC 3 cut(s) 1186, 1323, 1435
BspCNI CTCAG 2 cut(s) 230, 385
BspFNI CGCG 1 cut(s) 850
BspHI TCATGA 1 cut(s) 1360
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 1283
BspQI GCTCTTC 1 cut(s) 744
BspT104I TTCGAA 1 cut(s) 227
BspTNI GGTCTC 2 cut(s) 226, 959
BsrI ACTGG 1 cut(s) 1273
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 2 cut(s) 521, 1288
BssT1I CCWWGG 1 cut(s) 355
Bst4CI ACNGT 1 cut(s) 1058
Bst6I CTCTTC 2 cut(s) 224, 744
BstAPI GCANNNNNTGC 1 cut(s) 1312
BstBAI YACGTR 1 cut(s) 575
BstBI TTCGAA 1 cut(s) 227
BstC8I GCNNGC 2 cut(s) 552, 1082
BstDEI CTNAG 4 cut(s) 217, 239, 393, 1232
BstF5I GGATG 2 cut(s) 142, 904
BstFNI CGCG 1 cut(s) 850
BstKTI GATC 2 cut(s) 524, 1291
BstMAI GTCTC 3 cut(s) 203, 226, 959
BstMBI GATC 2 cut(s) 521, 1288
BstMCI CGRYCG 1 cut(s) 1382
BstMWI GCNNNNNNNGC 1 cut(s) 1312
BstNSI RCATGY 1 cut(s) 741
BstSLI GKGCMC 2 cut(s) 883, 1350
BstUI CGCG 1 cut(s) 850
BstV1I GCAGC 5 cut(s) 347, 559, 565, 568, 1223
BstX2I RGATCY 1 cut(s) 1288
BstYI RGATCY 1 cut(s) 1288
BsuRI GGCC 3 cut(s) 1186, 1323, 1435
BtsCI GGATG 2 cut(s) 142, 904
BtsIMutI CAGTG 2 cut(s) 408, 1350
Cac8I GCNNGC 2 cut(s) 552, 1082
CciI TCATGA 1 cut(s) 1360
Cfr13I GGNCC 2 cut(s) 839, 928
Csp6I GTAC 5 cut(s) 380, 418, 764, 772, 1225
CviAII CATG 6 cut(s) 445, 738, 801, 1325, 1361, 1431
CviQI GTAC 5 cut(s) 380, 418, 764, 772, 1225
DdeI CTNAG 4 cut(s) 217, 239, 393, 1232
DpnI GATC 2 cut(s) 523, 1290
DpnII GATC 2 cut(s) 521, 1288
EaeI YGGCCR 1 cut(s) 1321
Eam1104I CTCTTC 2 cut(s) 224, 744
EarI CTCTTC 2 cut(s) 224, 744
Eco130I CCWWGG 1 cut(s) 355
Eco31I GGTCTC 2 cut(s) 226, 959
Eco47I GGWCC 2 cut(s) 839, 928
Eco72I CACGTG 1 cut(s) 575
EcoRI GAATTC 2 cut(s) 115, 1456
EcoT14I CCWWGG 1 cut(s) 355
EcoT22I ATGCAT 1 cut(s) 1411
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 6 cut(s) 448, 741, 804, 1328, 1364, 1434
FaqI GGGAC 1 cut(s) 257
FatI CATG 6 cut(s) 444, 737, 800, 1324, 1360, 1430
FauI CCCGC 1 cut(s) 855
FauNDI CATATG 1 cut(s) 1311
Fnu4HI GCNGC 5 cut(s) 336, 548, 579, 582, 1212
FokI GGATG 2 cut(s) 149, 911
Fsp4HI GCNGC 5 cut(s) 336, 548, 579, 582, 1212
FspBI CTAG 5 cut(s) 761, 968, 1062, 1095, 1413
GluI GCNGC 5 cut(s) 336, 548, 579, 582, 1212
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 3 cut(s) 1186, 1323, 1435
Hin1II CATG 6 cut(s) 448, 741, 804, 1328, 1364, 1434
HindIII AAGCTT 3 cut(s) 503, 1296, 1400
HinfI GANTC 6 cut(s) 164, 360, 557, 608, 678, 1048
Hpy166II GTNNAC 4 cut(s) 881, 928, 1225, 1348
Hpy188I TCNGA 5 cut(s) 136, 220, 311, 906, 1053
Hpy8I GTNNAC 4 cut(s) 881, 928, 1225, 1348
HpyAV CCTTC 2 cut(s) 361, 897
HpyCH4III ACNGT 1 cut(s) 1058
HpyCH4IV ACGT 2 cut(s) 574, 912
HpyF10VI GCNNNNNNNGC 1 cut(s) 1312
HpyF3I CTNAG 4 cut(s) 217, 239, 393, 1232
HpySE526I ACGT 2 cut(s) 574, 912
Hsp92II CATG 6 cut(s) 448, 741, 804, 1328, 1364, 1434
Kzo9I GATC 2 cut(s) 521, 1288
LguI GCTCTTC 1 cut(s) 744
LmnI GCTCC 2 cut(s) 10, 1132
Lsp1109I GCAGC 5 cut(s) 347, 559, 565, 568, 1223
LweI GCATC 8 cut(s) 534, 678, 808, 1081, 1198, 1315, 1396, 1418
MaeI CTAG 5 cut(s) 761, 968, 1062, 1095, 1413
MaeII ACGT 2 cut(s) 574, 912
MaeIII GTNAC 2 cut(s) 361, 790
MalI GATC 2 cut(s) 523, 1290
MboI GATC 2 cut(s) 521, 1288
MboII GAAGA 9 cut(s) 119, 241, 758, 761, 791, 794, 797, 1262, 1265
MfeI CAATTG 1 cut(s) 1468
MflI RGATCY 1 cut(s) 1288
MhlI GDGCHC 2 cut(s) 883, 1350
MlsI TGGCCA 1 cut(s) 1323
MluCI AATT 9 cut(s) 115, 129, 192, 429, 468, 1018, 1338, 1456, 1468
MluNI TGGCCA 1 cut(s) 1323
MlyI GAGTC 1 cut(s) 369
MmeI TCCRAC 2 cut(s) 606, 1313
Mox20I TGGCCA 1 cut(s) 1323
Mph1103I ATGCAT 1 cut(s) 1411
MroXI GAANNNNTTC 1 cut(s) 1356
MscI TGGCCA 1 cut(s) 1323
MseI TTAA 3 cut(s) 99, 273, 935
MslI CAYNNNNRTG 2 cut(s) 799, 1001
Msp20I TGGCCA 1 cut(s) 1323
MspA1I CMGCKG 1 cut(s) 1214
MunI CAATTG 1 cut(s) 1468
MvnI CGCG 1 cut(s) 850
MwoI GCNNNNNNNGC 1 cut(s) 1312
NdeI CATATG 1 cut(s) 1311
NdeII GATC 2 cut(s) 521, 1288
NlaIII CATG 6 cut(s) 448, 741, 804, 1328, 1364, 1434
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 943
NmuCI GTSAC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 1411
NspI RCATGY 1 cut(s) 741
NspV TTCGAA 1 cut(s) 227
OliI CACNNNNGTG 1 cut(s) 1001
PagI TCATGA 1 cut(s) 1360
PciSI GCTCTTC 1 cut(s) 744
PdmI GAANNNNTTC 1 cut(s) 1356
PfeI GAWTC 5 cut(s) 164, 557, 608, 678, 1048
PkrI GCNGC 5 cut(s) 337, 549, 580, 583, 1213
PleI GAGTC 1 cut(s) 368
PmaCI CACGTG 1 cut(s) 575
PmlI CACGTG 1 cut(s) 575
PpsI GAGTC 1 cut(s) 368
Ppu21I YACGTR 1 cut(s) 575
PshBI ATTAAT 1 cut(s) 99
PsiI TTATAA 1 cut(s) 1103
PspCI CACGTG 1 cut(s) 575
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 839, 928
PsuI RGATCY 1 cut(s) 1288
RsaI GTAC 5 cut(s) 381, 419, 765, 773, 1226
RsaNI GTAC 5 cut(s) 380, 418, 764, 772, 1225
RseI CAYNNNNRTG 2 cut(s) 799, 1001
SapI GCTCTTC 1 cut(s) 744
SaqAI TTAA 3 cut(s) 99, 273, 935
SatI GCNGC 5 cut(s) 336, 548, 579, 582, 1212
Sau3AI GATC 2 cut(s) 521, 1288
Sau96I GGNCC 2 cut(s) 839, 928
SchI GAGTC 1 cut(s) 369
SduI GDGCHC 2 cut(s) 883, 1350
SfaNI GCATC 8 cut(s) 534, 678, 808, 1081, 1198, 1315, 1396, 1418
SfuI TTCGAA 1 cut(s) 227
SinI GGWCC 2 cut(s) 839, 928
SmiMI CAYNNNNRTG 2 cut(s) 799, 1001
SpeI ACTAGT 1 cut(s) 760
Sse9I AATT 9 cut(s) 115, 129, 192, 429, 468, 1018, 1338, 1456, 1468
SsiI CCGC 3 cut(s) 8, 848, 1214
SspMI CTAG 5 cut(s) 761, 968, 1062, 1095, 1413
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 1 cut(s) 1058
TaiI ACGT 2 cut(s) 577, 915
TaqI TCGA 3 cut(s) 227, 806, 1378
TaqII GACCGA 2 cut(s) 945, 1396
TasI AATT 9 cut(s) 115, 129, 192, 429, 468, 1018, 1338, 1456, 1468
TatI WGTACW 3 cut(s) 417, 771, 1224
TfiI GAWTC 5 cut(s) 164, 557, 608, 678, 1048
Tru1I TTAA 3 cut(s) 99, 273, 935
Tru9I TTAA 3 cut(s) 99, 273, 935
TscAI CASTG 2 cut(s) 415, 1350
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 5 cut(s) 335, 547, 578, 581, 1211
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 5 cut(s) 515, 548, 1005, 1349, 1469
TspGWI ACGGA 1 cut(s) 1170
TspRI CASTG 2 cut(s) 415, 1350
VneI GTGCAC 2 cut(s) 879, 1346
VpaK11BI GGWCC 2 cut(s) 839, 928
VspI ATTAAT 1 cut(s) 99
XapI RAATTY 6 cut(s) 115, 129, 429, 468, 1338, 1456
XbaI TCTAGA 1 cut(s) 1412
XceI RCATGY 1 cut(s) 741
XmnI GAANNNNTTC 1 cut(s) 1356
XspI CTAG 5 cut(s) 761, 968, 1062, 1095, 1413
Zsp2I ATGCAT 1 cut(s) 1411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.