FvH4_5g19400
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003639
Physical Location & Seq
Reverse (-)
11235485 .. 11238633
3149 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19400.t2

Sequence Viewer

Length: 696 bp
ATGGCTCCAAAGAACGATGGATCCACAAAAAAGGTTATGAACAAAGGAGCCTGGACTGCAGAAGAAGATAGAAAACTTGCAGAGTACATTGAAATCCATGGTGCCAAGAGGTGGAAGACTGTTGCTTCCATAGCAGGATTGAATCGATGTGGAAAGAGTTGCAGACTGAGATGGCTGAACTACCTGAGACCGAATATCAAGAGAGGAAACATCTCTGATGATGAAGAGGACTTGATACTTCGTCTTCATAAGCTACTTGGAAACAGGTGGTCACTGATTGCGGGGAGACTCCCAGGCCGAACAGACAATGAAATAAAGAACTACTGGAATTCACATTTGAGCAAGAAAATAAAGCAGAAGAATGAGAAAGCGACAATGGCTTCGACAGCGAAAGAGACCAGTACCACTAGTACTACGACCACTACTCCTCCCCATAAGGCACTAAACGAGAGCAGTAGTGCTCGAGCAGACAAAGACGAAGAAGAAGAAGAAGAACGAGTAAAACTAGGAACAAGTTCGGAGGGTAACTTCGATGTGAACGAGTTCTTTGACTTCTCCACTGAAGGTTCGTATGGGTTAGACTGGGTGAACAAGTTTCTTGAGCTTGATGAAGACCCCATGGCTGCTGCTTACAGAGAAAATAATAAGGCAAGTCCCAAGGGAAGCCAGAGTCAACATAAATCTAAGTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

232

Amino Acids

26.11

Weight (kDa)

8.81

Isoelectric Point (pI)

58.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 3.3e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 77 8.2e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 113 1.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 121 1.6e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 111
AciI CCGC 1 cut(s) 281
AclWI GGATC 2 cut(s) 15, 28
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 582
AfaI GTAC 3 cut(s) 86, 403, 412
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 2 cut(s) 92, 142
AhlI ACTAGT 1 cut(s) 407
AjnI CCWGG 2 cut(s) 50, 292
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 2 cut(s) 253, 604
AluI AGCT 2 cut(s) 253, 604
Alw21I GWGCWC 1 cut(s) 463
Alw26I GTCTC 3 cut(s) 181, 280, 389
AlwI GGATC 2 cut(s) 15, 28
Ama87I CYCGRG 1 cut(s) 462
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 2 cut(s) 623, 626
ApoI RAATTY 1 cut(s) 328
ArsI GACNNNNNNTTYG 2 cut(s) 364, 396
Asp700I GAANNNNTTC 2 cut(s) 514, 542
AsuHPI GGTGA 1 cut(s) 598
AvaI CYCGRG 1 cut(s) 462
BaeGI GKGCMC 1 cut(s) 692
BamHI GGATCC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 101
BbsI GAAGAC 3 cut(s) 122, 236, 618
Bbv12I GWGCWC 1 cut(s) 463
BbvI GCAGC 2 cut(s) 610, 613
BccI CCATC 2 cut(s) 11, 165
BciT130I CCWGG 2 cut(s) 52, 294
BcoDI GTCTC 3 cut(s) 181, 280, 389
BcuI ACTAGT 1 cut(s) 407
BfaI CTAG 2 cut(s) 408, 506
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 2 cut(s) 624, 627
BlsI GCNGC 2 cut(s) 625, 628
BmcAI AGTACT 1 cut(s) 412
Bme1390I CCNGG 2 cut(s) 52, 294
BmeT110I CYCGRG 1 cut(s) 462
BmiI GGNNCC 4 cut(s) 6, 22, 49, 103
BmrFI CCNGG 2 cut(s) 52, 294
BmrI ACTGGG 1 cut(s) 592
BmuI ACTGGG 1 cut(s) 592
BpiI GAAGAC 3 cut(s) 122, 236, 618
BpuEI CTTGAG 1 cut(s) 620
Bsa29I ATCGAT 1 cut(s) 145
BsaI GGTCTC 2 cut(s) 181, 389
BsaJI CCNNGG 4 cut(s) 97, 292, 618, 657
BsaXI ACNNNNNCTCC 4 cut(s) 409, 412, 439, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 3 cut(s) 329, 399, 587
BseBI CCWGG 2 cut(s) 52, 294
BseCI ATCGAT 1 cut(s) 145
BseDI CCNNGG 4 cut(s) 97, 292, 618, 657
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 158, 176
BseNI ACTGG 3 cut(s) 329, 399, 587
BseRI GAGGAG 1 cut(s) 417
BseSI GKGCMC 1 cut(s) 692
BseXI GCAGC 2 cut(s) 610, 613
BshFI GGCC 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 463
BsiHKCI CYCGRG 1 cut(s) 462
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 3 cut(s) 181, 280, 389
BsmFI GGGAC 1 cut(s) 639
BsnI GGCC 1 cut(s) 297
Bso31I GGTCTC 2 cut(s) 181, 389
BsoBI CYCGRG 1 cut(s) 462
Bsp1286I GDGCHC 2 cut(s) 463, 692
Bsp143I GATC 1 cut(s) 20
Bsp19I CCATGG 2 cut(s) 97, 618
BspACI CCGC 1 cut(s) 281
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 2 cut(s) 159, 177
BspDI ATCGAT 1 cut(s) 145
BspLI GGNNCC 4 cut(s) 6, 22, 49, 103
BspMAI CTGCAG 1 cut(s) 61
BspPI GGATC 2 cut(s) 15, 28
BspT107I GGYRCC 1 cut(s) 101
BspTNI GGTCTC 2 cut(s) 181, 389
BsrI ACTGG 3 cut(s) 329, 399, 587
BssECI CCNNGG 4 cut(s) 97, 292, 618, 657
BssMI GATC 1 cut(s) 20
BssT1I CCWWGG 3 cut(s) 97, 618, 657
Bst2UI CCWGG 2 cut(s) 52, 294
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 219
BstDEI CTNAG 3 cut(s) 167, 185, 684
BstDSI CCRYGG 2 cut(s) 97, 618
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 3 cut(s) 181, 280, 389
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 4 cut(s) 56, 131, 377, 386
BstNI CCWGG 2 cut(s) 52, 294
BstSCI CCNGG 2 cut(s) 50, 292
BstSFI CTRYAG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 692
BstV1I GCAGC 2 cut(s) 610, 613
BstV2I GAAGAC 3 cut(s) 122, 236, 618
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
Bsu15I ATCGAT 1 cut(s) 145
BsuRI GGCC 1 cut(s) 297
BsuTUI ATCGAT 1 cut(s) 145
BtgI CCRYGG 2 cut(s) 97, 618
BtsIMutI CAGTG 2 cut(s) 272, 558
ClaI ATCGAT 1 cut(s) 145
Csp6I GTAC 3 cut(s) 85, 402, 411
CviAII CATG 2 cut(s) 98, 619
CviJI RGCY 9 cut(s) 5, 50, 175, 253, 297, 380, 604, 623, 666
CviKI_1 RGCY 9 cut(s) 5, 50, 175, 253, 297, 380, 604, 623, 666
CviQI GTAC 3 cut(s) 85, 402, 411
DdeI CTNAG 3 cut(s) 167, 185, 684
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 3 cut(s) 97, 618, 657
Eco31I GGTCTC 2 cut(s) 181, 389
Eco57I CTGAAG 1 cut(s) 582
Eco88I CYCGRG 1 cut(s) 462
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 50, 292
EcoT14I CCWWGG 3 cut(s) 97, 618, 657
ErhI CCWWGG 3 cut(s) 97, 618, 657
FaeI CATG 2 cut(s) 101, 622
FaiI YATR 8 cut(s) 38, 99, 131, 249, 435, 573, 620, 678
FaqI GGGAC 1 cut(s) 639
FatI CATG 2 cut(s) 97, 618
FauI CCCGC 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 624, 627
Fsp4HI GCNGC 2 cut(s) 624, 627
FspBI CTAG 2 cut(s) 408, 506
GluI GCNGC 2 cut(s) 624, 627
HaeIII GGCC 1 cut(s) 297
Hin1II CATG 2 cut(s) 101, 622
HincII GTYRAC 1 cut(s) 674
HindII GTYRAC 1 cut(s) 674
HinfI GANTC 3 cut(s) 142, 288, 670
HphI GGTGA 1 cut(s) 598
Hpy166II GTNNAC 3 cut(s) 538, 589, 674
Hpy188I TCNGA 2 cut(s) 217, 520
Hpy188III TCNNGA 2 cut(s) 199, 599
Hpy8I GTNNAC 3 cut(s) 538, 589, 674
HpyAV CCTTC 1 cut(s) 557
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 3 cut(s) 59, 80, 162
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 131, 377, 386
HpyF3I CTNAG 3 cut(s) 167, 185, 684
Hsp92II CATG 2 cut(s) 101, 622
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 2 cut(s) 10, 47
Lsp1109I GCAGC 2 cut(s) 610, 613
MaeI CTAG 2 cut(s) 408, 506
MaeIII GTNAC 2 cut(s) 270, 524
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 2 cut(s) 463, 692
MluCI AATT 1 cut(s) 328
MlyI GAGTC 2 cut(s) 282, 679
MnlI CCTC 5 cut(s) 102, 197, 220, 438, 514
MroXI GAANNNNTTC 2 cut(s) 514, 542
MseI TTAA 1 cut(s) 694
MspR9I CCNGG 2 cut(s) 52, 294
MvaI CCWGG 2 cut(s) 52, 294
MwoI GCNNNNNNNGC 4 cut(s) 56, 131, 377, 386
NcoI CCATGG 2 cut(s) 97, 618
NdeII GATC 1 cut(s) 20
NlaIII CATG 2 cut(s) 101, 622
NlaIV GGNNCC 4 cut(s) 6, 22, 49, 103
NmuCI GTSAC 1 cut(s) 270
PaeR7I CTCGAG 1 cut(s) 462
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PdmI GAANNNNTTC 2 cut(s) 514, 542
PfeI GAWTC 1 cut(s) 142
PflMI CCANNNNNTGG 1 cut(s) 111
PkrI GCNGC 2 cut(s) 625, 628
PleI GAGTC 2 cut(s) 282, 678
PpsI GAGTC 2 cut(s) 282, 678
Psp6I CCWGG 2 cut(s) 50, 292
PspGI CCWGG 2 cut(s) 50, 292
PspN4I GGNNCC 4 cut(s) 6, 22, 49, 103
PspXI VCTCGAGB 1 cut(s) 462
PstI CTGCAG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 3 cut(s) 86, 403, 412
RsaNI GTAC 3 cut(s) 85, 402, 411
SaqAI TTAA 1 cut(s) 694
SatI GCNGC 2 cut(s) 624, 627
Sau3AI GATC 1 cut(s) 20
ScaI AGTACT 1 cut(s) 412
SchI GAGTC 2 cut(s) 282, 679
ScrFI CCNGG 2 cut(s) 52, 294
SduI GDGCHC 2 cut(s) 463, 692
SetI ASST 7 cut(s) 36, 113, 186, 255, 269, 568, 606
SfcI CTRYAG 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 462
SlaI CTCGAG 1 cut(s) 462
SmlI CTYRAG 2 cut(s) 462, 599
SmoI CTYRAG 2 cut(s) 462, 599
SpeI ACTAGT 1 cut(s) 407
Sse9I AATT 1 cut(s) 328
SsiI CCGC 1 cut(s) 281
SspMI CTAG 2 cut(s) 408, 506
StyD4I CCNGG 2 cut(s) 50, 292
StyI CCWWGG 3 cut(s) 97, 618, 657
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 4 cut(s) 145, 383, 463, 531
TaqII GACCGA 1 cut(s) 205
TasI AATT 1 cut(s) 328
TatI WGTACW 2 cut(s) 84, 410
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 694
Tru9I TTAA 1 cut(s) 694
TscAI CASTG 2 cut(s) 279, 565
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 2 cut(s) 623, 626
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 5 cut(s) 53, 236, 237, 324, 624
TspRI CASTG 2 cut(s) 279, 565
Van91I CCANNNNNTGG 1 cut(s) 111
XapI RAATTY 1 cut(s) 328
XhoI CTCGAG 1 cut(s) 462
XmnI GAANNNNTTC 2 cut(s) 514, 542
XspI CTAG 2 cut(s) 408, 506
ZrmI AGTACT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.