pycom06g04480
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0003639
Physical Location & Seq
Reverse (-)
5716202 .. 5717830
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g04480.3

Sequence Viewer

Length: 831 bp
ATGGATGTAGTCATTGACATTGACCCTTCAAATTTCCTCCTCACAAAACTGTACCAACCAGCAGGATATAAACCCTCAGTAGTTGTTGATAGCCAACAATCAGTCTTTCTTGCTATTTTCTTATGTGATATATTTAACACCAAATTTAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCTACGTACGTCATGGCTCCAAAGAACGACGCGTCAACAAAAAAGCCTGTGAACAAAGGACCATGGACAGGAGAGGAAGATAGAAAACTTGCAGAATATATTGAAATTCATGGTGCAAAGAGGTGGAAGACAGTTGCTTCGATAGCAGGTTTGAATCGTTGCGGGAAGAGTTGCAGGTTGAGATGGTTGAACTATTTGAGACCCAATATTAAGAGAGGCAACATTTCTGATGATGAAGAGGACTTGATACTTAGGCTTCATAAACTACTAGGAAACAGGTGGTCATTGATTGCCGGGAGACTTCCAGGTCGAACAGACAGTGAAATAAAGAATTACTGGAATTCTCATTTGAGCAAGAAAATGAATCAGAAGGTAAAAACATCTCTGGCTTCAACAGCCCAAGAGACAATGACGACTATTACTGCAACTGCACCTTCCCAGAAAACATCAGACAGTAGCGCCGATACTACAACTACACCTTCCCAGAAAGCATCAGACGATAGCGCTGATACGAACTTTGATGTGAATGAGTTCTTTGACTTCTCTGCTGAAGGTTCTTATGGGTTGGAGTGGGTGAACAAGTTTCTCGAGCTTGATGAAGACACCATGGCTGCCCAAGAAAAGGTCATTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

277

Amino Acids

30.81

Weight (kDa)

6.34

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 501
Acc36I ACCTGC 2 cut(s) 332, 360
AccII CGCG 1 cut(s) 227
AciI CCGC 1 cut(s) 357
AcsI RAATTY 4 cut(s) 31, 143, 300, 535
AcuI CTGAAG 1 cut(s) 765
AfaI GTAC 2 cut(s) 53, 203
AfeI AGCGCT 1 cut(s) 700
AfiI CCNNNNNNNGG 2 cut(s) 263, 817
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 5 cut(s) 30, 299, 349, 385, 588
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 1 cut(s) 787
AluI AGCT 1 cut(s) 787
Alw26I GTCTC 3 cut(s) 388, 487, 593
Ama87I CYCGRG 1 cut(s) 782
Aor51HI AGCGCT 1 cut(s) 700
ApeKI GCWGC 1 cut(s) 806
ApoI RAATTY 4 cut(s) 31, 143, 300, 535
ArsI GACNNNNNNTTYG 2 cut(s) 316, 348
Asp700I GAANNNNTTC 1 cut(s) 725
AspLEI GCGC 2 cut(s) 656, 701
AspS9I GGNCC 1 cut(s) 254
AsuC2I CCSGG 1 cut(s) 490
AsuHPI GGTGA 1 cut(s) 781
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 1 cut(s) 254
BbsI GAAGAC 2 cut(s) 329, 801
BbvI GCAGC 1 cut(s) 793
BccI CCATC 1 cut(s) 372
BciT130I CCWGG 1 cut(s) 501
BcnI CCSGG 1 cut(s) 490
BcoDI GTCTC 3 cut(s) 388, 487, 593
BfaI CTAG 1 cut(s) 464
BfoI RGCGCY 2 cut(s) 657, 702
BfuAI ACCTGC 2 cut(s) 332, 360
BisI GCNGC 1 cut(s) 807
BlsI GCNGC 1 cut(s) 808
Bme1390I CCNGG 2 cut(s) 490, 501
Bme18I GGWCC 1 cut(s) 254
BmeT110I CYCGRG 1 cut(s) 782
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 2 cut(s) 490, 501
BmsI GCATC 1 cut(s) 695
BpiI GAAGAC 2 cut(s) 329, 801
BpuMI CCSGG 1 cut(s) 490
BsaAI YACGTR 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 2 cut(s) 257, 801
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 817
Bse1I ACTGG 1 cut(s) 536
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 2 cut(s) 257, 801
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 263, 817
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 536
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 793
BsgI GTGCAG 1 cut(s) 609
Bsh1236I CGCG 1 cut(s) 227
BsiHKCI CYCGRG 1 cut(s) 782
BsiSI CCGG 1 cut(s) 489
BsiWI CGTACG 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 263, 817
BsmAI GTCTC 3 cut(s) 388, 487, 593
Bso31I GGTCTC 1 cut(s) 388
BsoBI CYCGRG 1 cut(s) 782
Bsp19I CCATGG 2 cut(s) 257, 801
BspACI CCGC 1 cut(s) 357
BspCNI CTCAG 1 cut(s) 89
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 213
BspMI ACCTGC 2 cut(s) 332, 360
BspTNI GGTCTC 1 cut(s) 388
BsrI ACTGG 1 cut(s) 536
BssECI CCNNGG 2 cut(s) 257, 801
BssT1I CCWWGG 2 cut(s) 257, 801
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 4 cut(s) 51, 328, 515, 650
Bst6I CTCTTC 2 cut(s) 356, 426
BstBAI YACGTR 1 cut(s) 201
BstDEI CTNAG 2 cut(s) 76, 446
BstDSI CCRYGG 2 cut(s) 257, 801
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 227
BstH2I RGCGCY 2 cut(s) 657, 702
BstHHI GCGC 2 cut(s) 656, 701
BstMAI GTCTC 3 cut(s) 388, 487, 593
BstMWI GCNNNNNNNGC 2 cut(s) 338, 590
BstNI CCWGG 1 cut(s) 501
BstSCI CCNGG 2 cut(s) 488, 499
BstSNI TACGTA 1 cut(s) 201
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 793
BstV2I GAAGAC 2 cut(s) 329, 801
BtgI CCRYGG 2 cut(s) 257, 801
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 520
BveI ACCTGC 2 cut(s) 332, 360
CfoI GCGC 2 cut(s) 656, 701
Cfr13I GGNCC 1 cut(s) 254
CseI GACGC 2 cut(s) 216, 233
Csp6I GTAC 2 cut(s) 52, 202
CviAII CATG 4 cut(s) 208, 258, 305, 802
CviJI RGCY 8 cut(s) 93, 212, 241, 451, 584, 593, 787, 806
CviKI_1 RGCY 8 cut(s) 93, 212, 241, 451, 584, 593, 787, 806
CviQI GTAC 2 cut(s) 52, 202
DdeI CTNAG 2 cut(s) 76, 446
DrdI GACNNNNNNGTC 1 cut(s) 501
DseDI GACNNNNNNGTC 1 cut(s) 501
Eam1104I CTCTTC 2 cut(s) 356, 426
EarI CTCTTC 2 cut(s) 356, 426
Eco105I TACGTA 1 cut(s) 201
Eco130I CCWWGG 2 cut(s) 257, 801
Eco31I GGTCTC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 254
Eco47III AGCGCT 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 765
Eco88I CYCGRG 1 cut(s) 782
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 2 cut(s) 257, 801
ErhI CCWWGG 2 cut(s) 257, 801
FaeI CATG 4 cut(s) 211, 261, 308, 805
FatI CATG 4 cut(s) 207, 257, 304, 801
FauI CCCGC 1 cut(s) 350
Fnu4HI GCNGC 1 cut(s) 807
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 807
FspBI CTAG 1 cut(s) 464
GlaI GCGC 2 cut(s) 655, 700
GluI GCNGC 1 cut(s) 807
HaeII RGCGCY 2 cut(s) 657, 702
HapII CCGG 1 cut(s) 489
HgaI GACGC 2 cut(s) 216, 233
HhaI GCGC 2 cut(s) 656, 701
Hin1II CATG 4 cut(s) 211, 261, 308, 805
Hin6I GCGC 2 cut(s) 654, 699
HinP1I GCGC 2 cut(s) 654, 699
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HinfI GANTC 2 cut(s) 349, 559
HpaII CCGG 1 cut(s) 489
HphI GGTGA 1 cut(s) 781
Hpy166II GTNNAC 3 cut(s) 231, 247, 772
Hpy188I TCNGA 4 cut(s) 424, 564, 646, 691
Hpy188III TCNNGA 1 cut(s) 782
Hpy8I GTNNAC 3 cut(s) 231, 247, 772
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 5 cut(s) 36, 559, 639, 684, 740
HpyCH4III ACNGT 4 cut(s) 51, 328, 515, 650
HpyCH4IV ACGT 2 cut(s) 200, 204
HpyCH4V TGCA 5 cut(s) 287, 311, 369, 620, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 590
HpyF3I CTNAG 2 cut(s) 76, 446
HpySE526I ACGT 2 cut(s) 200, 204
Hsp92II CATG 4 cut(s) 211, 261, 308, 805
HspAI GCGC 2 cut(s) 654, 699
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 1 cut(s) 793
LweI GCATC 1 cut(s) 695
MaeI CTAG 1 cut(s) 464
MaeII ACGT 2 cut(s) 200, 204
MboII GAAGA 5 cut(s) 284, 334, 373, 443, 806
MluCI AATT 5 cut(s) 31, 143, 300, 526, 535
MluI ACGCGT 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 741
MnlI CCTC 7 cut(s) 47, 50, 85, 262, 309, 404, 427
MroXI GAANNNNTTC 1 cut(s) 725
MseI TTAA 3 cut(s) 135, 147, 405
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 2 cut(s) 490, 501
MvaI CCWGG 1 cut(s) 501
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 338, 590
NciI CCSGG 1 cut(s) 490
NcoI CCATGG 2 cut(s) 257, 801
NlaIII CATG 4 cut(s) 211, 261, 308, 805
NlaIV GGNNCC 1 cut(s) 213
PaeR7I CTCGAG 1 cut(s) 782
PdmI GAANNNNTTC 1 cut(s) 725
PfeI GAWTC 2 cut(s) 349, 559
Pfl23II CGTACG 1 cut(s) 201
PkrI GCNGC 1 cut(s) 808
Ppu21I YACGTR 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspLI CGTACG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 254
RsaI GTAC 2 cut(s) 53, 203
RsaNI GTAC 2 cut(s) 52, 202
SaqAI TTAA 3 cut(s) 135, 147, 405
SatI GCNGC 1 cut(s) 807
Sau96I GGNCC 1 cut(s) 254
ScrFI CCNGG 2 cut(s) 490, 501
SfaNI GCATC 1 cut(s) 695
Sfr274I CTCGAG 1 cut(s) 782
SinI GGWCC 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 782
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
SnaBI TACGTA 1 cut(s) 201
Sse9I AATT 5 cut(s) 31, 143, 300, 526, 535
SsiI CCGC 1 cut(s) 357
SspI AATATT 1 cut(s) 403
SspMI CTAG 1 cut(s) 464
StyD4I CCNGG 2 cut(s) 488, 499
StyI CCWWGG 2 cut(s) 257, 801
TaaI ACNGT 4 cut(s) 51, 328, 515, 650
TaiI ACGT 2 cut(s) 203, 207
TaqI TCGA 3 cut(s) 335, 505, 783
TasI AATT 5 cut(s) 31, 143, 300, 526, 535
TfiI GAWTC 2 cut(s) 349, 559
Tru1I TTAA 3 cut(s) 135, 147, 405
Tru9I TTAA 3 cut(s) 135, 147, 405
TscAI CASTG 1 cut(s) 520
TseI GCWGC 1 cut(s) 806
TspDTI ATGAA 5 cut(s) 293, 443, 444, 572, 807
TspRI CASTG 1 cut(s) 520
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 4 cut(s) 31, 143, 300, 535
XhoI CTCGAG 1 cut(s) 782
XmnI GAANNNNTTC 1 cut(s) 725
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.