FvH4_2g36372

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002777
Physical Location & Seq
Forward (+)
26641183 .. 26643304
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36372.t1

Sequence Viewer

Length: 1320 bp
ATGGCTAACGATCAGTGGATCTATGACACACCTCCCCTCTCTGATGTAGAGGCCAAGCTCAGGCCACTCCTAGTTCAGCTTGGAAAAGACAACAAACTATTAGGAGTTCAGGTTTGCGCTTACAAAGATGGAAAGGTTATTGTTGACACTGCTGGTGGATTGCTCGAAAAAGATAGTGACCGGCGGGTACAGCCGGATAGCCTTTTTCCAGTTTTTTCTGTAACAAAGGGAATAACAGCTGGAATGTTACATTGGTTGATCGACGCCGGGAAATTGAAGCTTGAGGATTGTGTTGCAAACATATGGCCAGAATTTGGATCAAATGGAAAAGATCACATAAAGGTCCATCATGCGCTTAACCATACATCTGGACTGCACAATGCCTTGGCAGACGTAGTGTTAGGGAACCCTTTTCTCATGTCTAACTGGGAAGAGTGTTTAAAAAGCACTGCCATGTCAGAACCTGAGACCGAGCCTGGAAAGGAGCAGACATACCACTACATATCCTATGGTTATATCTGCGGCGGAATCATTGAGCATGCATCAGGGAAGAAATATCAGGAGATTCTTGAAGAAGCATTCATTCGCCCCCTAAAACTCGAAGGAGAGTTGTATGTTGGAATCCCTGCAGGAGTGGAAGCTCGGCTTGCAAGCCTTGCACCCTATGGAGATGATCCGAAGAAGCTTTCAGAGATTGGCAGCCGTTTGGACTTGCCCTCCAGCCTCAAGCCAGACAACATTCAACAAGCTGCTACCATGGTGCCTGCTCTATTCAACATGCTCAACATCCGCCGCGCCATCATCCCAGCAGCCAACGCACATTGTTCAGCACGCGCGCTAGCACGTTACTATGCATCCCTAGTTGATGGTGGTGCTATTCCACCACCACATCCCACTTCCTCCTCGACACCACCTCTCGGTAGCCATCCTCACAATCCCCACTCTCCTGCTGTTGAAAACTCACCATCCAGTCCTAAGAAAGATAAGCTGTTCAGCAACCCCAAAATTCATGATGCTTTTTTGGGGGTGGGGGAGTATGCAAGTTTGGTTATGCAGGATGGGATATTTGGACTCGGGTTCAAGAGGTGCCACCACTCGAAGGACAATTCACTTATCGGCTTTGGGCACTCAGGAATGGGTGGATCTACTGGCTTTTGTGACATACAAAACAAGTTTGCTATTGCTGTAACTTTGAATAAGATGTCATATGGTGCTGAGACAGCAAGAATAATACAGTTGGTTTGTTCAGAGCTGAATATCCCAGTGCCAGAGGAGTACTCAGGTTTTGAAGACAGTGATGCAAAAGTTTTGGTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1 Beta-lactamase WaaY

Protein Analysis

440

Amino Acids

47.58

Weight (kDa)

5.93

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-lactamase PF00144 23 - 405 6.5e-48 Beta-lactamase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 760, 1086
AccB7I CCANNNNNTGG 1 cut(s) 314
AccII CGCG 3 cut(s) 795, 834, 836
AciI CCGC 5 cut(s) 184, 522, 525, 790, 793
AclWI GGATC 4 cut(s) 26, 325, 668, 1150
AcoI YGGCCR 1 cut(s) 305
AcsI RAATTY 2 cut(s) 311, 1005
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 2 cut(s) 189, 1277
AfiI CCNNNNNNNGG 4 cut(s) 60, 314, 917, 1099
AgsI TTSAA 8 cut(s) 277, 572, 743, 775, 956, 1081, 1195, 1289
AjnI CCWGG 1 cut(s) 475
AjuI GAANNNNNNNTTGG 2 cut(s) 235, 267
AluBI AGCT 9 cut(s) 58, 79, 239, 280, 641, 685, 749, 988, 1252
AluI AGCT 9 cut(s) 58, 79, 239, 280, 641, 685, 749, 988, 1252
Alw26I GTCTC 2 cut(s) 461, 1211
AlwI GGATC 4 cut(s) 26, 325, 668, 1150
AlwNI CAGNNNCTG 1 cut(s) 464
Ama87I CYCGRG 1 cut(s) 1073
AoxI GGCC 3 cut(s) 51, 62, 305
ApeKI GCWGC 3 cut(s) 699, 749, 809
ApoI RAATTY 2 cut(s) 311, 1005
AspLEI GCGC 5 cut(s) 119, 355, 797, 836, 838
AspS9I GGNCC 1 cut(s) 343
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 954
AsuNHI GCTAGC 1 cut(s) 838
AvaI CYCGRG 1 cut(s) 1073
AvaII GGWCC 1 cut(s) 343
BaeGI GKGCMC 1 cut(s) 1128
BalI TGGCCA 1 cut(s) 307
BanI GGYRCC 2 cut(s) 760, 1086
BbsI GAAGAC 1 cut(s) 1296
BbvI GCAGC 3 cut(s) 711, 736, 821
BccI CCATC 7 cut(s) 122, 354, 806, 860, 933, 973, 1052
BceAI ACGGC 1 cut(s) 687
BciT130I CCWGG 1 cut(s) 477
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 461, 1211
BfaI CTAG 3 cut(s) 71, 839, 860
BfmI CTRYAG 1 cut(s) 627
BisI GCNGC 5 cut(s) 523, 700, 750, 793, 810
BlsI GCNGC 5 cut(s) 524, 701, 751, 794, 811
BmcAI AGTACT 1 cut(s) 1277
Bme1390I CCNGG 2 cut(s) 268, 477
Bme18I GGWCC 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 1073
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 3 cut(s) 407, 762, 1088
BmrFI CCNGG 2 cut(s) 268, 477
BmrI ACTGGG 2 cut(s) 436, 1256
BmsI GCATC 4 cut(s) 551, 863, 1003, 1288
BmtI GCTAGC 1 cut(s) 842
BmuI ACTGGG 2 cut(s) 436, 1256
BpiI GAAGAC 1 cut(s) 1296
BplI GAGNNNNNCTC 2 cut(s) 1262, 1294
BpmI CTGGAG 1 cut(s) 703
Bpu10I CCTNAGC 1 cut(s) 59
BpuEI CTTGAG 2 cut(s) 302, 710
BpuMI CCSGG 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 2 cut(s) 384, 756
BsaXI ACNNNNNCTCC 4 cut(s) 96, 126, 701, 731
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 314, 917, 1099
Bse118I RCCGGY 1 cut(s) 180
Bse1I ACTGG 5 cut(s) 209, 431, 969, 1153, 1262
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 384, 756
BseGI GGATG 7 cut(s) 786, 801, 854, 889, 925, 965, 1063
BseLI CCNNNNNNNGG 4 cut(s) 60, 314, 917, 1099
BseMII CTCAG 5 cut(s) 73, 456, 1143, 1206, 1293
BseNI ACTGG 5 cut(s) 209, 431, 969, 1153, 1262
BsePI GCGCGC 1 cut(s) 834
BseRI GAGGAG 2 cut(s) 892, 1286
BseSI GKGCMC 1 cut(s) 1128
BseXI GCAGC 3 cut(s) 711, 736, 821
BseYI CCCAGC 1 cut(s) 805
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 3 cut(s) 795, 834, 836
BshFI GGCC 3 cut(s) 53, 64, 307
BshNI GGYRCC 2 cut(s) 760, 1086
BsiHKCI CYCGRG 1 cut(s) 1073
BsiSI CCGG 3 cut(s) 181, 194, 267
BslI CCNNNNNNNGG 4 cut(s) 60, 314, 917, 1099
BsmAI GTCTC 2 cut(s) 461, 1211
BsmI GAATGC 1 cut(s) 578
BsnI GGCC 3 cut(s) 53, 64, 307
Bso31I GGTCTC 1 cut(s) 461
BsoBI CYCGRG 1 cut(s) 1073
Bsp1286I GDGCHC 1 cut(s) 1128
Bsp143I GATC 7 cut(s) 10, 18, 258, 317, 331, 673, 1142
Bsp19I CCATGG 1 cut(s) 756
BspACI CCGC 5 cut(s) 184, 522, 525, 790, 793
BspANI GGCC 3 cut(s) 53, 64, 307
BspCNI CTCAG 5 cut(s) 72, 457, 1142, 1207, 1292
BspFNI CGCG 3 cut(s) 795, 834, 836
BspHI TCATGA 1 cut(s) 1009
BspLI GGNNCC 3 cut(s) 407, 762, 1088
BspMAI CTGCAG 1 cut(s) 631
BspOI GCTAGC 1 cut(s) 842
BspPI GGATC 4 cut(s) 26, 325, 668, 1150
BspT107I GGYRCC 2 cut(s) 760, 1086
BspTNI GGTCTC 1 cut(s) 461
BsrFI RCCGGY 1 cut(s) 180
BsrI ACTGG 5 cut(s) 209, 431, 969, 1153, 1262
BssAI RCCGGY 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 384, 756
BssHII GCGCGC 1 cut(s) 834
BssMI GATC 7 cut(s) 10, 18, 258, 317, 331, 673, 1142
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 2 cut(s) 384, 756
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 2 cut(s) 1236, 1295
Bst6I CTCTTC 1 cut(s) 426
BstACI GRCGYC 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 656
BstC8I GCNNGC 7 cut(s) 540, 648, 652, 765, 832, 836, 840
BstDEI CTNAG 6 cut(s) 59, 465, 975, 1129, 1215, 1279
BstDSI CCRYGG 1 cut(s) 756
BstF5I GGATG 7 cut(s) 786, 801, 854, 889, 925, 965, 1063
BstFNI CGCG 3 cut(s) 795, 834, 836
BstHHI GCGC 5 cut(s) 119, 355, 797, 836, 838
BstKTI GATC 7 cut(s) 13, 21, 261, 320, 334, 676, 1145
BstMAI GTCTC 2 cut(s) 461, 1211
BstMBI GATC 7 cut(s) 10, 18, 258, 317, 331, 673, 1142
BstMWI GCNNNNNNNGC 5 cut(s) 190, 647, 656, 815, 1220
BstNI CCWGG 1 cut(s) 477
BstNSI RCATGY 2 cut(s) 542, 781
BstSCI CCNGG 2 cut(s) 266, 475
BstSFI CTRYAG 1 cut(s) 627
BstSLI GKGCMC 1 cut(s) 1128
BstUI CGCG 3 cut(s) 795, 834, 836
BstV1I GCAGC 3 cut(s) 711, 736, 821
BstV2I GAAGAC 1 cut(s) 1296
BstX2I RGATCY 2 cut(s) 18, 1142
BstXI CCANNNNNNTGG 1 cut(s) 368
BstYI RGATCY 2 cut(s) 18, 1142
BsuRI GGCC 3 cut(s) 53, 64, 307
BtgI CCRYGG 1 cut(s) 756
BtsCI GGATG 7 cut(s) 786, 801, 854, 889, 925, 965, 1063
BtsI GCAGTG 2 cut(s) 147, 447
BtsIMutI CAGTG 5 cut(s) 20, 147, 447, 1269, 1300
Cac8I GCNNGC 7 cut(s) 540, 648, 652, 765, 832, 836, 840
CaiI CAGNNNCTG 1 cut(s) 464
CciI TCATGA 1 cut(s) 1009
CfoI GCGC 5 cut(s) 119, 355, 797, 836, 838
Cfr10I RCCGGY 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 343
CseI GACGC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 188, 1276
CviAII CATG 7 cut(s) 350, 418, 454, 539, 757, 778, 1010
CviQI GTAC 2 cut(s) 188, 1276
DdeI CTNAG 6 cut(s) 59, 465, 975, 1129, 1215, 1279
DpnI GATC 7 cut(s) 12, 20, 260, 319, 333, 675, 1144
DpnII GATC 7 cut(s) 10, 18, 258, 317, 331, 673, 1142
DraI TTTAAA 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
EciI GGCGGA 2 cut(s) 540, 779
Eco130I CCWWGG 2 cut(s) 384, 756
Eco31I GGTCTC 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 343
Eco88I CYCGRG 1 cut(s) 1073
EcoRII CCWGG 1 cut(s) 475
EcoT14I CCWWGG 2 cut(s) 384, 756
EcoT22I ATGCAT 2 cut(s) 544, 856
ErhI CCWWGG 2 cut(s) 384, 756
FaeI CATG 7 cut(s) 353, 421, 457, 542, 760, 781, 1013
FalI AAGNNNNNCTT 2 cut(s) 630, 662
FatI CATG 7 cut(s) 349, 417, 453, 538, 756, 777, 1009
FauI CCCGC 1 cut(s) 177
FauNDI CATATG 2 cut(s) 302, 1207
Fnu4HI GCNGC 5 cut(s) 523, 700, 750, 793, 810
FokI GGATG 7 cut(s) 773, 788, 841, 876, 912, 952, 1070
Fsp4HI GCNGC 5 cut(s) 523, 700, 750, 793, 810
FspBI CTAG 3 cut(s) 71, 839, 860
GlaI GCGC 5 cut(s) 118, 354, 796, 835, 837
GluI GCNGC 5 cut(s) 523, 700, 750, 793, 810
GsaI CCCAGC 1 cut(s) 809
GsuI CTGGAG 1 cut(s) 703
HaeIII GGCC 3 cut(s) 53, 64, 307
HapII CCGG 3 cut(s) 181, 194, 267
HgaI GACGC 1 cut(s) 272
HhaI GCGC 5 cut(s) 119, 355, 797, 836, 838
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 7 cut(s) 353, 421, 457, 542, 760, 781, 1013
Hin6I GCGC 5 cut(s) 117, 353, 795, 834, 836
HinP1I GCGC 5 cut(s) 117, 353, 795, 834, 836
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 2 cut(s) 278, 683
HinfI GANTC 4 cut(s) 528, 565, 621, 1071
HpaII CCGG 3 cut(s) 181, 194, 267
HphI GGTGA 1 cut(s) 954
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 5 cut(s) 43, 460, 678, 691, 1249
Hpy188III TCNNGA 6 cut(s) 369, 560, 569, 1010, 1081, 1131
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 2 cut(s) 596, 1093
HpyCH4III ACNGT 2 cut(s) 1236, 1295
HpyCH4IV ACGT 2 cut(s) 393, 844
HpyF10VI GCNNNNNNNGC 5 cut(s) 190, 647, 656, 815, 1220
HpyF3I CTNAG 6 cut(s) 59, 465, 975, 1129, 1215, 1279
HpySE526I ACGT 2 cut(s) 393, 844
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 7 cut(s) 353, 421, 457, 542, 760, 781, 1013
HspAI GCGC 5 cut(s) 117, 353, 795, 834, 836
Kzo9I GATC 7 cut(s) 10, 18, 258, 317, 331, 673, 1142
LmnI GCTCC 1 cut(s) 484
Lsp1109I GCAGC 3 cut(s) 711, 736, 821
LweI GCATC 4 cut(s) 551, 863, 1003, 1288
MaeI CTAG 3 cut(s) 71, 839, 860
MaeII ACGT 2 cut(s) 393, 844
MaeIII GTNAC 6 cut(s) 176, 220, 246, 845, 1157, 1186
MalI GATC 7 cut(s) 12, 20, 260, 319, 333, 675, 1144
MboI GATC 7 cut(s) 10, 18, 258, 317, 331, 673, 1142
MboII GAAGA 5 cut(s) 443, 562, 584, 691, 1301
MflI RGATCY 2 cut(s) 18, 1142
MhlI GDGCHC 1 cut(s) 1128
MlsI TGGCCA 1 cut(s) 307
MluCI AATT 5 cut(s) 272, 311, 1005, 1105, 1315
MluNI TGGCCA 1 cut(s) 307
MlyI GAGTC 1 cut(s) 1065
MmeI TCCRAC 1 cut(s) 598
Mox20I TGGCCA 1 cut(s) 307
Mph1103I ATGCAT 2 cut(s) 544, 856
MscI TGGCCA 1 cut(s) 307
MseI TTAA 3 cut(s) 357, 440, 1314
MslI CAYNNNNRTG 1 cut(s) 452
Msp20I TGGCCA 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 3 cut(s) 181, 194, 267
MspR9I CCNGG 2 cut(s) 268, 477
Mva1269I GAATGC 1 cut(s) 578
MvaI CCWGG 1 cut(s) 477
MvnI CGCG 3 cut(s) 795, 834, 836
MwoI GCNNNNNNNGC 5 cut(s) 190, 647, 656, 815, 1220
NciI CCSGG 1 cut(s) 268
NcoI CCATGG 1 cut(s) 756
NdeI CATATG 2 cut(s) 302, 1207
NdeII GATC 7 cut(s) 10, 18, 258, 317, 331, 673, 1142
NheI GCTAGC 1 cut(s) 838
NlaIII CATG 7 cut(s) 353, 421, 457, 542, 760, 781, 1013
NlaIV GGNNCC 3 cut(s) 407, 762, 1088
NmeAIII GCCGAG 1 cut(s) 622
NmuCI GTSAC 2 cut(s) 176, 1157
NsiI ATGCAT 2 cut(s) 544, 856
NspI RCATGY 2 cut(s) 542, 781
PaeI GCATGC 1 cut(s) 542
PagI TCATGA 1 cut(s) 1009
PauI GCGCGC 1 cut(s) 834
PctI GAATGC 1 cut(s) 578
PfeI GAWTC 3 cut(s) 528, 565, 621
PflMI CCANNNNNTGG 1 cut(s) 314
PkrI GCNGC 5 cut(s) 524, 701, 751, 794, 811
PleI GAGTC 1 cut(s) 1065
PpsI GAGTC 1 cut(s) 1065
Psp6I CCWGG 1 cut(s) 475
PspFI CCCAGC 1 cut(s) 805
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 3 cut(s) 407, 762, 1088
PspPI GGNCC 1 cut(s) 343
PstI CTGCAG 1 cut(s) 631
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 2 cut(s) 18, 1142
PteI GCGCGC 1 cut(s) 834
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 2 cut(s) 189, 1277
RsaNI GTAC 2 cut(s) 188, 1276
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 3 cut(s) 357, 440, 1314
SatI GCNGC 5 cut(s) 523, 700, 750, 793, 810
Sau3AI GATC 7 cut(s) 10, 18, 258, 317, 331, 673, 1142
Sau96I GGNCC 1 cut(s) 343
SbfI CCTGCAGG 1 cut(s) 631
ScaI AGTACT 1 cut(s) 1277
SchI GAGTC 1 cut(s) 1065
ScrFI CCNGG 2 cut(s) 268, 477
SdaI CCTGCAGG 1 cut(s) 631
SduI GDGCHC 1 cut(s) 1128
SfaNI GCATC 4 cut(s) 551, 863, 1003, 1288
SfcI CTRYAG 1 cut(s) 627
SinI GGWCC 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 2 cut(s) 281, 725
SmoI CTYRAG 2 cut(s) 281, 725
SphI GCATGC 1 cut(s) 542
Sse8387I CCTGCAGG 1 cut(s) 631
Sse9I AATT 5 cut(s) 272, 311, 1005, 1105, 1315
SsiI CCGC 5 cut(s) 184, 522, 525, 790, 793
SspMI CTAG 3 cut(s) 71, 839, 860
StyD4I CCNGG 2 cut(s) 266, 475
StyI CCWWGG 2 cut(s) 384, 756
TaaI ACNGT 2 cut(s) 1236, 1295
TaiI ACGT 2 cut(s) 396, 847
TaqI TCGA 5 cut(s) 165, 261, 600, 905, 1097
TaqII GACCGA 1 cut(s) 485
TasI AATT 5 cut(s) 272, 311, 1005, 1105, 1315
TatI WGTACW 1 cut(s) 1275
TauI GCSGC 2 cut(s) 525, 795
TfiI GAWTC 3 cut(s) 528, 565, 621
Tru1I TTAA 3 cut(s) 357, 440, 1314
Tru9I TTAA 3 cut(s) 357, 440, 1314
TscAI CASTG 5 cut(s) 20, 154, 454, 1269, 1300
TseFI GTSAC 2 cut(s) 176, 1157
TseI GCWGC 3 cut(s) 699, 749, 809
Tsp45I GTSAC 2 cut(s) 176, 1157
TspDTI ATGAA 2 cut(s) 571, 998
TspRI CASTG 5 cut(s) 20, 154, 454, 1269, 1300
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 2 cut(s) 311, 1005
XceI RCATGY 2 cut(s) 542, 781
XspI CTAG 3 cut(s) 71, 839, 860
ZrmI AGTACT 1 cut(s) 1277
Zsp2I ATGCAT 2 cut(s) 544, 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.