domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G24810 AT5G24810 |
| fragaria_vesca | FvH4_2g36370 FvH4_2g36370 FvH4_2g36370 FvH4_2g36372 |
| malus_domestica | MD08G1123100.v1.1 MD15G1100800.v1.1 MD15G1102100.v1.1 |
| prunus_persica | Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1 |
| pyrus_communis | pycom08g10200 pycom08g10210 pycom15g09330 |
| rosa_chinensis | RchiOBHm_Chr6g0305511 |
| rosa_laevigata | RLG00000010882 RLG00000010885 |
| rosa_multiflora | Rmu_co8395109.1_g000001 Rmu_sc0001809.1_g000002 Rmu_sc0001809.1_g000004 Rmu_sc0029548.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00162720 Rroxscaffold_7G00162740 |
| rosa_rugosa | Rorug06G0340800.1 Rorug06G0341000 Rorug06G0341100 |
| rosa_samantha | Rh6AG453000 Rh6AG453200 Rh6BG448600 Rh6BG448800 Rh6CG466700 Rh6CG467000 Rh6DG453400 Rh6DG453600 |
| rosa_wichuraiana | Rw6G039470 Rw6G039490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1429, 3245 |
| Acc36I | ACCTGC | 3 cut(s) | 1429, 2203, 3245 |
| Acc65I | GGTACC | 1 cut(s) | 3085 |
| AccB1I | GGYRCC | 4 cut(s) | 2149, 3085, 3385, 3711 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1703 |
| AccBSI | CCGCTC | 1 cut(s) | 154 |
| AccI | GTMKAC | 2 cut(s) | 227, 2058 |
| AccII | CGCG | 4 cut(s) | 417, 1273, 3420, 3469 |
| AciI | CCGC | 9 cut(s) | 154, 1318, 2049, 2273, 3147, 3150, 3328, 3415, 3418 |
| AcoI | YGGCCR | 6 cut(s) | 1694, 1867, 2592, 2807, 3075, 3748 |
| AcsI | RAATTY | 9 cut(s) | 889, 1485, 1700, 1943, 2327, 2587, 2936, 3179, 3630 |
| AcuI | CTGAAG | 2 cut(s) | 270, 2087 |
| AcvI | CACGTG | 2 cut(s) | 830, 3458 |
| AcyI | GRCGYC | 1 cut(s) | 2889 |
| AfaI | GTAC | 4 cut(s) | 1114, 1851, 2608, 3087 |
| AflII | CTTAAG | 1 cut(s) | 1052 |
| AflIII | ACRYGT | 1 cut(s) | 827 |
| AhlI | ACTAGT | 1 cut(s) | 2426 |
| AjnI | CCWGG | 7 cut(s) | 883, 1249, 1864, 1869, 2017, 3100, 3183 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 977, 1009, 1624, 1656, 2860, 2892 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 344, 376 |
| Alw21I | GWGCWC | 2 cut(s) | 148, 2227 |
| Alw26I | GTCTC | 6 cut(s) | 84, 1137, 1336, 1850, 2080, 3836 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 223, 1853 |
| Ama87I | CYCGRG | 3 cut(s) | 2671, 2906, 3698 |
| AoxI | GGCC | 8 cut(s) | 48, 1694, 1867, 2418, 2592, 2807, 3075, 3748 |
| ApoI | RAATTY | 9 cut(s) | 889, 1485, 1700, 1943, 2327, 2587, 2936, 3179, 3630 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 2633, 2665, 2915, 2947, 3716, 3748 |
| AseI | ATTAAT | 2 cut(s) | 1377, 1785 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 711, 989, 3179 |
| Asp718I | GGTACC | 1 cut(s) | 3085 |
| AspLEI | GCGC | 6 cut(s) | 419, 1062, 1273, 2980, 3422, 3469 |
| AspS9I | GGNCC | 6 cut(s) | 1012, 1385, 1732, 2419, 2649, 2968 |
| AsuC2I | CCSGG | 1 cut(s) | 2499 |
| AsuHPI | GGTGA | 6 cut(s) | 217, 884, 1265, 2303, 2813, 3203 |
| AvaI | CYCGRG | 3 cut(s) | 2671, 2906, 3698 |
| AvaII | GGWCC | 5 cut(s) | 1012, 1385, 1732, 2649, 2968 |
| BaeGI | GKGCMC | 1 cut(s) | 2670 |
| BalI | TGGCCA | 4 cut(s) | 1696, 1869, 2594, 3750 |
| BanI | GGYRCC | 4 cut(s) | 2149, 3085, 3385, 3711 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1956, 1988 |
| BbrPI | CACGTG | 2 cut(s) | 830, 3458 |
| BbsI | GAAGAC | 1 cut(s) | 3921 |
| Bbv12I | GWGCWC | 2 cut(s) | 148, 2227 |
| BbvCI | CCTCAGC | 2 cut(s) | 1005, 1448 |
| BceAI | ACGGC | 1 cut(s) | 3090 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2131, 2165, 3479, 3513 |
| BciT130I | CCWGG | 7 cut(s) | 885, 1251, 1866, 1871, 2019, 3102, 3185 |
| BclI | TGATCA | 1 cut(s) | 1399 |
| BcnI | CCSGG | 1 cut(s) | 2499 |
| BcoDI | GTCTC | 6 cut(s) | 84, 1137, 1336, 1850, 2080, 3836 |
| BcuI | ACTAGT | 1 cut(s) | 2426 |
| BfaI | CTAG | 6 cut(s) | 1064, 1331, 1553, 2427, 3485, 3666 |
| BfmI | CTRYAG | 3 cut(s) | 1539, 2196, 3252 |
| BfrI | CTTAAG | 1 cut(s) | 1052 |
| BfuAI | ACCTGC | 3 cut(s) | 1429, 2203, 3245 |
| BglII | AGATCT | 1 cut(s) | 2956 |
| BlpI | GCTNAGC | 3 cut(s) | 534, 2215, 3451 |
| Bme1390I | CCNGG | 8 cut(s) | 885, 1251, 1866, 1871, 2019, 2499, 3102, 3185 |
| Bme18I | GGWCC | 5 cut(s) | 1012, 1385, 1732, 2649, 2968 |
| BmeT110I | CYCGRG | 3 cut(s) | 2671, 2906, 3698 |
| BmgT120I | GGNCC | 6 cut(s) | 1012, 1385, 1732, 2419, 2649, 2968 |
| BmrFI | CCNGG | 8 cut(s) | 885, 1251, 1866, 1871, 2019, 2499, 3102, 3185 |
| BmrI | ACTGGG | 5 cut(s) | 1568, 1825, 2445, 3061, 3881 |
| BmsI | GCATC | 8 cut(s) | 404, 1188, 1231, 1940, 2548, 3488, 3628, 3913 |
| BmuI | ACTGGG | 5 cut(s) | 1568, 1825, 2445, 3061, 3881 |
| BpiI | GAAGAC | 1 cut(s) | 3921 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 347, 379 |
| BpmI | CTGGAG | 3 cut(s) | 1566, 2001, 3328 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1005, 1448 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 534, 2215, 3451 |
| BpuEI | CTTGAG | 5 cut(s) | 254, 1484, 1691, 2496, 3335 |
| BpuMI | CCSGG | 1 cut(s) | 2499 |
| BsaAI | YACGTR | 2 cut(s) | 830, 3458 |
| BsaHI | GRCGYC | 1 cut(s) | 2889 |
| BsaI | GGTCTC | 2 cut(s) | 1336, 2080 |
| BsaJI | CCNNGG | 4 cut(s) | 1773, 2497, 3009, 3381 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1485, 1515, 1865, 1895 |
| Bse118I | RCCGGY | 2 cut(s) | 2805, 2809 |
| Bse3DI | GCAATG | 3 cut(s) | 1089, 2209, 3445 |
| BseBI | CCWGG | 7 cut(s) | 885, 1251, 1866, 1871, 2019, 3102, 3185 |
| BseDI | CCNNGG | 4 cut(s) | 1773, 2497, 3009, 3381 |
| BseMI | GCAATG | 3 cut(s) | 1089, 2209, 3445 |
| BseRI | GAGGAG | 3 cut(s) | 2145, 3511, 3514 |
| BseSI | GKGCMC | 1 cut(s) | 2670 |
| BseX3I | CGGCCG | 1 cut(s) | 2807 |
| BseYI | CCCAGC | 2 cut(s) | 1468, 3430 |
| BsgI | GTGCAG | 1 cut(s) | 2984 |
| Bsh1236I | CGCG | 4 cut(s) | 417, 1273, 3420, 3469 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2810 |
| BshFI | GGCC | 8 cut(s) | 50, 1696, 1869, 2420, 2594, 2809, 3077, 3750 |
| BshNI | GGYRCC | 4 cut(s) | 2149, 3085, 3385, 3711 |
| BsiEI | CGRYCG | 1 cut(s) | 2810 |
| BsiHKAI | GWGCWC | 2 cut(s) | 148, 2227 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2671, 2906, 3698 |
| BsiSI | CCGG | 4 cut(s) | 2499, 2806, 2810, 2892 |
| BslFI | GGGAC | 6 cut(s) | 365, 1025, 1062, 1398, 2135, 2635 |
| BsmAI | GTCTC | 6 cut(s) | 84, 1137, 1336, 1850, 2080, 3836 |
| BsmFI | GGGAC | 6 cut(s) | 365, 1025, 1062, 1398, 2135, 2635 |
| BsmI | GAATGC | 4 cut(s) | 163, 756, 1967, 3203 |
| BsnI | GGCC | 8 cut(s) | 50, 1696, 1869, 2420, 2594, 2809, 3077, 3750 |
| Bso31I | GGTCTC | 2 cut(s) | 1336, 2080 |
| BsoBI | CYCGRG | 3 cut(s) | 2671, 2906, 3698 |
| Bsp1286I | GDGCHC | 3 cut(s) | 148, 2227, 2670 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 534, 2215, 3451 |
| Bsp19I | CCATGG | 1 cut(s) | 3381 |
| BspACI | CCGC | 9 cut(s) | 154, 1318, 2049, 2273, 3147, 3150, 3328, 3415, 3418 |
| BspANI | GGCC | 8 cut(s) | 50, 1696, 1869, 2420, 2594, 2809, 3077, 3750 |
| BspFNI | CGCG | 4 cut(s) | 417, 1273, 3420, 3469 |
| BspHI | TCATGA | 4 cut(s) | 148, 607, 1338, 3634 |
| BspMAI | CTGCAG | 3 cut(s) | 1543, 2200, 3256 |
| BspMI | ACCTGC | 3 cut(s) | 1429, 2203, 3245 |
| BspT107I | GGYRCC | 4 cut(s) | 2149, 3085, 3385, 3711 |
| BspTI | CTTAAG | 1 cut(s) | 1052 |
| BspTNI | GGTCTC | 2 cut(s) | 1336, 2080 |
| BsrBI | CCGCTC | 1 cut(s) | 154 |
| BsrDI | GCAATG | 3 cut(s) | 1089, 2209, 3445 |
| BsrFI | RCCGGY | 2 cut(s) | 2805, 2809 |
| BssAI | RCCGGY | 2 cut(s) | 2805, 2809 |
| BssECI | CCNNGG | 4 cut(s) | 1773, 2497, 3009, 3381 |
| BssNI | GRCGYC | 1 cut(s) | 2889 |
| BssT1I | CCWWGG | 3 cut(s) | 1773, 3009, 3381 |
| Bst2UI | CCWGG | 7 cut(s) | 885, 1251, 1866, 1871, 2019, 3102, 3185 |
| Bst4CI | ACNGT | 6 cut(s) | 46, 631, 1099, 2471, 3861, 3920 |
| Bst6I | CTCTTC | 6 cut(s) | 270, 294, 1815, 2290, 3051, 3532 |
| BstACI | GRCGYC | 1 cut(s) | 2889 |
| BstAFI | CTTAAG | 1 cut(s) | 1052 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 111, 3281, 3440 |
| BstBAI | YACGTR | 2 cut(s) | 830, 3458 |
| BstC8I | GCNNGC | 9 cut(s) | 1080, 1929, 2143, 2418, 2575, 3165, 3273, 3277, 3390 |
| BstDSI | CCRYGG | 1 cut(s) | 3381 |
| BstEII | GGTNACC | 2 cut(s) | 872, 2801 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2514 |
| BstFNI | CGCG | 4 cut(s) | 417, 1273, 3420, 3469 |
| BstHHI | GCGC | 6 cut(s) | 419, 1062, 1273, 2980, 3422, 3469 |
| BstMAI | GTCTC | 6 cut(s) | 84, 1137, 1336, 1850, 2080, 3836 |
| BstMCI | CGRYCG | 1 cut(s) | 2810 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 111, 401, 433, 2591, 2815, 3272, 3281, 3440, 3845 |
| BstNI | CCWGG | 7 cut(s) | 885, 1251, 1866, 1871, 2019, 3102, 3185 |
| BstNSI | RCATGY | 5 cut(s) | 1931, 2170, 2323, 3167, 3406 |
| BstPI | GGTNACC | 2 cut(s) | 872, 2801 |
| BstSCI | CCNGG | 8 cut(s) | 883, 1249, 1864, 1869, 2017, 2497, 3100, 3183 |
| BstSFI | CTRYAG | 3 cut(s) | 1539, 2196, 3252 |
| BstSLI | GKGCMC | 1 cut(s) | 2670 |
| BstUI | CGCG | 4 cut(s) | 417, 1273, 3420, 3469 |
| BstV2I | GAAGAC | 1 cut(s) | 3921 |
| BstX2I | RGATCY | 4 cut(s) | 1407, 1720, 2956, 3767 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 688, 1757, 2993 |
| BstYI | RGATCY | 4 cut(s) | 1407, 1720, 2956, 3767 |
| BstZI | CGGCCG | 1 cut(s) | 2807 |
| BsuRI | GGCC | 8 cut(s) | 50, 1696, 1869, 2420, 2594, 2809, 3077, 3750 |
| BtgI | CCRYGG | 1 cut(s) | 3381 |
| BtgZI | GCGATG | 1 cut(s) | 398 |
| BtsI | GCAGTG | 2 cut(s) | 1536, 2772 |
| BtsIMutI | CAGTG | 7 cut(s) | 51, 636, 1409, 1536, 2772, 3894, 3925 |
| BveI | ACCTGC | 3 cut(s) | 1429, 2203, 3245 |
| Cac8I | GCNNGC | 9 cut(s) | 1080, 1929, 2143, 2418, 2575, 3165, 3273, 3277, 3390 |
| CaiI | CAGNNNCTG | 2 cut(s) | 223, 1853 |
| CciI | TCATGA | 4 cut(s) | 148, 607, 1338, 3634 |
| CfoI | GCGC | 6 cut(s) | 419, 1062, 1273, 2980, 3422, 3469 |
| Cfr10I | RCCGGY | 2 cut(s) | 2805, 2809 |
| Cfr13I | GGNCC | 6 cut(s) | 1012, 1385, 1732, 2419, 2649, 2968 |
| CseI | GACGC | 1 cut(s) | 2897 |
| Csp6I | GTAC | 4 cut(s) | 1113, 1850, 2607, 3086 |
| CviQI | GTAC | 4 cut(s) | 1113, 1850, 2607, 3086 |
| DraI | TTTAAA | 3 cut(s) | 765, 1830, 3066 |
| EaeI | YGGCCR | 6 cut(s) | 1694, 1867, 2592, 2807, 3075, 3748 |
| EagI | CGGCCG | 1 cut(s) | 2807 |
| Eam1104I | CTCTTC | 6 cut(s) | 270, 294, 1815, 2290, 3051, 3532 |
| EarI | CTCTTC | 6 cut(s) | 270, 294, 1815, 2290, 3051, 3532 |
| EciI | GGCGGA | 2 cut(s) | 3165, 3404 |
| EclXI | CGGCCG | 1 cut(s) | 2807 |
| Eco130I | CCWWGG | 3 cut(s) | 1773, 3009, 3381 |
| Eco31I | GGTCTC | 2 cut(s) | 1336, 2080 |
| Eco32I | GATATC | 2 cut(s) | 1336, 2704 |
| Eco47I | GGWCC | 5 cut(s) | 1012, 1385, 1732, 2649, 2968 |
| Eco52I | CGGCCG | 1 cut(s) | 2807 |
| Eco57I | CTGAAG | 2 cut(s) | 270, 2087 |
| Eco72I | CACGTG | 2 cut(s) | 830, 3458 |
| Eco88I | CYCGRG | 3 cut(s) | 2671, 2906, 3698 |
| Eco91I | GGTNACC | 2 cut(s) | 872, 2801 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2514 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2419, 2649 |
| EcoO65I | GGTNACC | 2 cut(s) | 872, 2801 |
| EcoRII | CCWGG | 7 cut(s) | 883, 1249, 1864, 1869, 2017, 3100, 3183 |
| EcoRV | GATATC | 2 cut(s) | 1336, 2704 |
| EcoT14I | CCWWGG | 3 cut(s) | 1773, 3009, 3381 |
| EcoT22I | ATGCAT | 3 cut(s) | 1246, 1933, 3481 |
| ErhI | CCWWGG | 3 cut(s) | 1773, 3009, 3381 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 115, 147, 977, 1009, 3255, 3287 |
| FaqI | GGGAC | 6 cut(s) | 365, 1025, 1062, 1398, 2135, 2635 |
| FauNDI | CATATG | 2 cut(s) | 835, 3832 |
| FbaI | TGATCA | 1 cut(s) | 1399 |
| FblI | GTMKAC | 2 cut(s) | 227, 2058 |
| FspBI | CTAG | 6 cut(s) | 1064, 1331, 1553, 2427, 3485, 3666 |
| GlaI | GCGC | 6 cut(s) | 418, 1061, 1272, 2979, 3421, 3468 |
| GsaI | CCCAGC | 2 cut(s) | 1472, 3434 |
| GsuI | CTGGAG | 3 cut(s) | 1566, 2001, 3328 |
| HaeIII | GGCC | 8 cut(s) | 50, 1696, 1869, 2420, 2594, 2809, 3077, 3750 |
| HapII | CCGG | 4 cut(s) | 2499, 2806, 2810, 2892 |
| HgaI | GACGC | 1 cut(s) | 2897 |
| HhaI | GCGC | 6 cut(s) | 419, 1062, 1273, 2980, 3422, 3469 |
| Hin1I | GRCGYC | 1 cut(s) | 2889 |
| Hin6I | GCGC | 6 cut(s) | 417, 1060, 1271, 2978, 3420, 3467 |
| HinP1I | GCGC | 6 cut(s) | 417, 1060, 1271, 2978, 3420, 3467 |
| HincII | GTYRAC | 4 cut(s) | 517, 720, 799, 1651 |
| HindII | GTYRAC | 4 cut(s) | 517, 720, 799, 1651 |
| HindIII | AAGCTT | 2 cut(s) | 1667, 3308 |
| HpaII | CCGG | 4 cut(s) | 2499, 2806, 2810, 2892 |
| HphI | GGTGA | 6 cut(s) | 217, 884, 1265, 2303, 2813, 3203 |
| Hpy166II | GTNNAC | 6 cut(s) | 228, 517, 720, 799, 1651, 2059 |
| Hpy8I | GTNNAC | 6 cut(s) | 228, 517, 720, 799, 1651, 2059 |
| Hpy99I | CGWCG | 1 cut(s) | 2184 |
| HpyCH4III | ACNGT | 6 cut(s) | 46, 631, 1099, 2471, 3861, 3920 |
| HpyCH4IV | ACGT | 4 cut(s) | 829, 1314, 2233, 3457 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 111, 401, 433, 2591, 2815, 3272, 3281, 3440, 3845 |
| HpySE526I | ACGT | 4 cut(s) | 829, 1314, 2233, 3457 |
| Hsp92I | GRCGYC | 1 cut(s) | 2889 |
| HspAI | GCGC | 6 cut(s) | 417, 1060, 1271, 2978, 3420, 3467 |
| KflI | GGGWCCC | 1 cut(s) | 2649 |
| KpnI | GGTACC | 1 cut(s) | 3089 |
| Ksp22I | TGATCA | 1 cut(s) | 1399 |
| LmnI | GCTCC | 2 cut(s) | 1873, 3109 |
| LweI | GCATC | 8 cut(s) | 404, 1188, 1231, 1940, 2548, 3488, 3628, 3913 |
| MaeI | CTAG | 6 cut(s) | 1064, 1331, 1553, 2427, 3485, 3666 |
| MaeII | ACGT | 4 cut(s) | 829, 1314, 2233, 3457 |
| MbiI | CCGCTC | 1 cut(s) | 154 |
| MfeI | CAATTG | 1 cut(s) | 510 |
| MflI | RGATCY | 4 cut(s) | 1407, 1720, 2956, 3767 |
| MhlI | GDGCHC | 3 cut(s) | 148, 2227, 2670 |
| MlsI | TGGCCA | 4 cut(s) | 1696, 1869, 2594, 3750 |
| MluNI | TGGCCA | 4 cut(s) | 1696, 1869, 2594, 3750 |
| MlyI | GAGTC | 5 cut(s) | 278, 1139, 1284, 1449, 3690 |
| MmeI | TCCRAC | 1 cut(s) | 171 |
| Mox20I | TGGCCA | 4 cut(s) | 1696, 1869, 2594, 3750 |
| Mph1103I | ATGCAT | 3 cut(s) | 1246, 1933, 3481 |
| MroXI | GAANNNNTTC | 3 cut(s) | 711, 989, 3179 |
| MscI | TGGCCA | 4 cut(s) | 1696, 1869, 2594, 3750 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1841, 3077 |
| Msp20I | TGGCCA | 4 cut(s) | 1696, 1869, 2594, 3750 |
| MspA1I | CMGCKG | 4 cut(s) | 1544, 1628, 2051, 2864 |
| MspCI | CTTAAG | 1 cut(s) | 1052 |
| MspI | CCGG | 4 cut(s) | 2499, 2806, 2810, 2892 |
| MspR9I | CCNGG | 8 cut(s) | 885, 1251, 1866, 1871, 2019, 2499, 3102, 3185 |
| MunI | CAATTG | 1 cut(s) | 510 |
| Mva1269I | GAATGC | 4 cut(s) | 163, 756, 1967, 3203 |
| MvaI | CCWGG | 7 cut(s) | 885, 1251, 1866, 1871, 2019, 3102, 3185 |
| MvnI | CGCG | 4 cut(s) | 417, 1273, 3420, 3469 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 111, 401, 433, 2591, 2815, 3272, 3281, 3440, 3845 |
| NciI | CCSGG | 1 cut(s) | 2499 |
| NcoI | CCATGG | 1 cut(s) | 3381 |
| NdeI | CATATG | 2 cut(s) | 835, 3832 |
| NmeAIII | GCCGAG | 1 cut(s) | 3247 |
| NmuCI | GTSAC | 7 cut(s) | 872, 1609, 2309, 2474, 2801, 3732, 3782 |
| NsiI | ATGCAT | 3 cut(s) | 1246, 1933, 3481 |
| NspI | RCATGY | 5 cut(s) | 1931, 2170, 2323, 3167, 3406 |
| PaeI | GCATGC | 2 cut(s) | 1931, 3167 |
| PaeR7I | CTCGAG | 1 cut(s) | 2906 |
| PagI | TCATGA | 4 cut(s) | 148, 607, 1338, 3634 |
| PaqCI | CACCTGC | 2 cut(s) | 1429, 3245 |
| PctI | GAATGC | 4 cut(s) | 163, 756, 1967, 3203 |
| PdmI | GAANNNNTTC | 3 cut(s) | 711, 989, 3179 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1703 |
| PfoI | TCCNGGA | 2 cut(s) | 883, 3183 |
| PleI | GAGTC | 5 cut(s) | 278, 1138, 1283, 1449, 3690 |
| PmaCI | CACGTG | 2 cut(s) | 830, 3458 |
| PmlI | CACGTG | 2 cut(s) | 830, 3458 |
| PpsI | GAGTC | 5 cut(s) | 278, 1138, 1283, 1449, 3690 |
| Ppu21I | YACGTR | 2 cut(s) | 830, 3458 |
| PpuMI | RGGWCCY | 1 cut(s) | 2649 |
| PshBI | ATTAAT | 2 cut(s) | 1377, 1785 |
| Psp5II | RGGWCCY | 1 cut(s) | 2649 |
| Psp6I | CCWGG | 7 cut(s) | 883, 1249, 1864, 1869, 2017, 3100, 3183 |
| PspCI | CACGTG | 2 cut(s) | 830, 3458 |
| PspEI | GGTNACC | 2 cut(s) | 872, 2801 |
| PspFI | CCCAGC | 2 cut(s) | 1468, 3430 |
| PspGI | CCWGG | 7 cut(s) | 883, 1249, 1864, 1869, 2017, 3100, 3183 |
| PspPI | GGNCC | 6 cut(s) | 1012, 1385, 1732, 2419, 2649, 2968 |
| PspPPI | RGGWCCY | 1 cut(s) | 2649 |
| PspXI | VCTCGAGB | 1 cut(s) | 2906 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 438, 470 |
| PstI | CTGCAG | 3 cut(s) | 1543, 2200, 3256 |
| PstNI | CAGNNNCTG | 2 cut(s) | 223, 1853 |
| PsuI | RGATCY | 4 cut(s) | 1407, 1720, 2956, 3767 |
| PvuII | CAGCTG | 3 cut(s) | 1544, 1628, 2864 |
| RsaI | GTAC | 4 cut(s) | 1114, 1851, 2608, 3087 |
| RsaNI | GTAC | 4 cut(s) | 1113, 1850, 2607, 3086 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1841, 3077 |
| Sau96I | GGNCC | 6 cut(s) | 1012, 1385, 1732, 2419, 2649, 2968 |
| SbfI | CCTGCAGG | 1 cut(s) | 3256 |
| SchI | GAGTC | 5 cut(s) | 278, 1139, 1284, 1449, 3690 |
| ScrFI | CCNGG | 8 cut(s) | 885, 1251, 1866, 1871, 2019, 2499, 3102, 3185 |
| SdaI | CCTGCAGG | 1 cut(s) | 3256 |
| SduI | GDGCHC | 3 cut(s) | 148, 2227, 2670 |
| SfaNI | GCATC | 8 cut(s) | 404, 1188, 1231, 1940, 2548, 3488, 3628, 3913 |
| SfcI | CTRYAG | 3 cut(s) | 1539, 2196, 3252 |
| Sfr274I | CTCGAG | 1 cut(s) | 2906 |
| SinI | GGWCC | 5 cut(s) | 1012, 1385, 1732, 2649, 2968 |
| SlaI | CTCGAG | 1 cut(s) | 2906 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1841, 3077 |
| SmlI | CTYRAG | 7 cut(s) | 269, 1052, 1463, 1670, 2511, 2906, 3350 |
| SmoI | CTYRAG | 7 cut(s) | 269, 1052, 1463, 1670, 2511, 2906, 3350 |
| SpeI | ACTAGT | 1 cut(s) | 2426 |
| SphI | GCATGC | 2 cut(s) | 1931, 3167 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 3256 |
| SsiI | CCGC | 9 cut(s) | 154, 1318, 2049, 2273, 3147, 3150, 3328, 3415, 3418 |
| SspI | AATATT | 1 cut(s) | 3902 |
| SspMI | CTAG | 6 cut(s) | 1064, 1331, 1553, 2427, 3485, 3666 |
| StyD4I | CCNGG | 8 cut(s) | 883, 1249, 1864, 1869, 2017, 2497, 3100, 3183 |
| StyI | CCWWGG | 3 cut(s) | 1773, 3009, 3381 |
| TaaI | ACNGT | 6 cut(s) | 46, 631, 1099, 2471, 3861, 3920 |
| TaiI | ACGT | 4 cut(s) | 832, 1317, 2236, 3460 |
| TatI | WGTACW | 1 cut(s) | 1112 |
| TauI | GCSGC | 3 cut(s) | 3150, 3330, 3420 |
| TscAI | CASTG | 7 cut(s) | 51, 636, 1409, 1543, 2779, 3894, 3925 |
| TseFI | GTSAC | 7 cut(s) | 872, 1609, 2309, 2474, 2801, 3732, 3782 |
| Tsp45I | GTSAC | 7 cut(s) | 872, 1609, 2309, 2474, 2801, 3732, 3782 |
| TspGWI | ACGGA | 6 cut(s) | 1097, 1294, 1348, 1671, 2168, 2220 |
| TspRI | CASTG | 7 cut(s) | 51, 636, 1409, 1543, 2779, 3894, 3925 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1703 |
| Vha464I | CTTAAG | 1 cut(s) | 1052 |
| VpaK11BI | GGWCC | 5 cut(s) | 1012, 1385, 1732, 2649, 2968 |
| VspI | ATTAAT | 2 cut(s) | 1377, 1785 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2514 |
| XapI | RAATTY | 9 cut(s) | 889, 1485, 1700, 1943, 2327, 2587, 2936, 3179, 3630 |
| XbaI | TCTAGA | 1 cut(s) | 1330 |
| XceI | RCATGY | 5 cut(s) | 1931, 2170, 2323, 3167, 3406 |
| XhoI | CTCGAG | 1 cut(s) | 2906 |
| XmiI | GTMKAC | 2 cut(s) | 227, 2058 |
| XmnI | GAANNNNTTC | 3 cut(s) | 711, 989, 3179 |
| XspI | CTAG | 6 cut(s) | 1064, 1331, 1553, 2427, 3485, 3666 |
| Zsp2I | ATGCAT | 3 cut(s) | 1246, 1933, 3481 |