Rroxscaffold_7G00162740

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002777
Physical Location & Seq
Forward (+)
5138791 .. 5140680
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162740.1

Sequence Viewer

Length: 1332 bp
ATGGCTAATGATCACTGGATCTATGATACACCTCCCCTCTCTGATGTAGAGGCCAAGCTCAGGCCGCTCCTAGTTCAGCTGGGAAATGACAACAAATTACTTGGAGTTCAGGTATGCGCTTACAAAGATGGAAAGGTTATTATTGACACTGCTGGTGGATTGCTCGAAAAAGATAGTGATCGGCCGGTTCAGCCTGACAGCCTTTTTCCAGTTTTTTCGGTAACAAAGGGAATAACAGCTGGAATGTTACATTGGTTGATTGATGCCGGAAAATTGAAGCTCGAGGATAGTGTTGCAAATATATGGTCAGAATTTGGATCACATGGAAAAGATCTCATAAAGGTCCATCATGCGCTTAACCATACATCTGGACTGCACAATGCCTTGGCAGACATTGTGTTAGGAAGCCCTTTTCTCATGTCTAACTGGGAAGAGTGTTTAAAAAGCACGGCCATGTCGGTACCTGAGAGTGAGCCTGGCAAGGAGCAGACATACCACTATATATCTTATGGTTATATCTGCGGCGGAATCATTGAGCATGCATCAGGGAAGAAATTCCAGGAGATTCTTGAAGAAGCATTCATTCACCCCCTACAAATTGAAGGCGAGTTATATATTGGAATCCCTGCAGGCAAGTCAGCGAGTGTGGAAGCTCGGCTTGCAAGCCTTGCACCCTATGGAGATGATCCAAAGAAGCTTTCAGAGGTTGGCAGCCGCTTGGATTTGCCCTCCAGCCTGAAGCCAGACAATATTCAACAAGCTGCTACCATGGTGCCTGCTCTATTCAACATGCTCAACATCCGCCGCGCCATCATCCCAGCAGCCAATGCACATTGCTCAGCACGTGCAATAGCGCGTTACTATGCATCCCTAGTCGATGGTGGTGCTATTCCACCACCTCATTCCTCCTCCTCTTCGACACCACCTCTCGGTAGCCATCCTCACATTCCCCACTCTACTGCTGCTGAAAACTCATCATCCAGTCCTAAAATAGATAAGCTATTCAGCAACCCAAAAATTCATGATGCTTTTTTGGGGGTGGGGGAATATGATAGTTTGGTAAAGCAGGATGGGATATTTGGACTCGGGTTTAAGAGGTGCCACCACTCGAAGGACAGGTCACTTATCGGCTTTGGCCACTCAGGAATGGGTGGATCTACTGGCTTTTGTGACATAGAAAACAAGTTTGCTATTGCTGTAACTTTGAATAAAATGTCATATGGTGCTGAGACTGCAAGAATAATACAGTTGGTTTGTTCAGAGTTGAATATCCCAGTGCCAGAGGAATATTCAGGTTTTGAAGACAGTGATGCAAAAGTTTTAGTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1 Beta-lactamase WaaY

Protein Analysis

443

Amino Acids

47.79

Weight (kDa)

5.79

Isoelectric Point (pI)

50.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-lactamase PF00144 24 - 409 2.6e-43 Beta-lactamase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 460
AccB1I GGYRCC 3 cut(s) 460, 772, 1098
AccBSI CCGCTC 1 cut(s) 67
AccII CGCG 2 cut(s) 807, 856
AciI CCGC 6 cut(s) 65, 522, 525, 715, 802, 805
AclWI GGATC 4 cut(s) 26, 325, 680, 1162
AcoI YGGCCR 3 cut(s) 182, 450, 1135
AcsI RAATTY 3 cut(s) 311, 554, 1017
AcuI CTGAAG 1 cut(s) 758
AcvI CACGTG 1 cut(s) 845
AfaI GTAC 1 cut(s) 462
AfiI CCNNNNNNNGG 3 cut(s) 60, 929, 1111
AgsI TTSAA 8 cut(s) 277, 572, 602, 755, 787, 1207, 1267, 1301
AjnI CCWGG 2 cut(s) 475, 558
AjuI GAANNNNNNNTTGG 4 cut(s) 235, 267, 682, 714
AluBI AGCT 8 cut(s) 58, 79, 239, 280, 653, 697, 761, 1000
AluI AGCT 8 cut(s) 58, 79, 239, 280, 653, 697, 761, 1000
Alw26I GTCTC 1 cut(s) 1223
AlwI GGATC 4 cut(s) 26, 325, 680, 1162
Ama87I CYCGRG 2 cut(s) 281, 1085
AoxI GGCC 5 cut(s) 51, 62, 182, 450, 1135
ApeKI GCWGC 4 cut(s) 711, 761, 821, 962
ApoI RAATTY 3 cut(s) 311, 554, 1017
ArsI GACNNNNNNTTYG 4 cut(s) 290, 322, 1103, 1135
Asp700I GAANNNNTTC 1 cut(s) 554
Asp718I GGTACC 1 cut(s) 460
AspLEI GCGC 4 cut(s) 119, 355, 809, 856
AspS9I GGNCC 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 578
AvaI CYCGRG 2 cut(s) 281, 1085
AvaII GGWCC 1 cut(s) 343
BalI TGGCCA 1 cut(s) 1137
BanI GGYRCC 3 cut(s) 460, 772, 1098
BbrPI CACGTG 1 cut(s) 845
BbsI GAAGAC 1 cut(s) 1308
BbvI GCAGC 4 cut(s) 723, 748, 833, 949
BccI CCATC 6 cut(s) 122, 354, 818, 872, 945, 1064
BceAI ACGGC 1 cut(s) 465
BcgI CGANNNNNNTGC 2 cut(s) 866, 900
BciT130I CCWGG 2 cut(s) 477, 560
BclI TGATCA 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 1223
BfaI CTAG 2 cut(s) 71, 872
BfmI CTRYAG 1 cut(s) 627
BglII AGATCT 1 cut(s) 331
BisI GCNGC 8 cut(s) 65, 523, 712, 715, 762, 805, 822, 963
BlpI GCTNAGC 1 cut(s) 838
BlsI GCNGC 8 cut(s) 66, 524, 713, 716, 763, 806, 823, 964
Bme1390I CCNGG 2 cut(s) 477, 560
Bme18I GGWCC 1 cut(s) 343
BmeT110I CYCGRG 2 cut(s) 281, 1085
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 3 cut(s) 462, 774, 1100
BmrFI CCNGG 2 cut(s) 477, 560
BmrI ACTGGG 2 cut(s) 436, 1268
BmsI GCATC 5 cut(s) 253, 551, 875, 1015, 1300
BmuI ACTGGG 2 cut(s) 436, 1268
BpiI GAAGAC 1 cut(s) 1308
BpmI CTGGAG 1 cut(s) 715
Bpu10I CCTNAGC 1 cut(s) 59
Bpu1102I GCTNAGC 1 cut(s) 838
BsaAI YACGTR 1 cut(s) 845
BsaBI GATNNNNATC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 384, 768
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 929, 1111
Bse118I RCCGGY 1 cut(s) 184
Bse1I ACTGG 6 cut(s) 20, 209, 431, 981, 1165, 1274
Bse3DI GCAATG 1 cut(s) 832
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 2 cut(s) 477, 560
BseDI CCNNGG 2 cut(s) 384, 768
BseGI GGATG 6 cut(s) 798, 813, 866, 937, 977, 1075
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 3 cut(s) 60, 929, 1111
BseMI GCAATG 1 cut(s) 832
BseMII CTCAG 5 cut(s) 73, 456, 852, 1155, 1218
BseNI ACTGG 6 cut(s) 20, 209, 431, 981, 1165, 1274
BseRI GAGGAG 2 cut(s) 898, 901
BseX3I CGGCCG 1 cut(s) 182
BseXI GCAGC 4 cut(s) 723, 748, 833, 949
BseYI CCCAGC 2 cut(s) 79, 817
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 2 cut(s) 807, 856
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 5 cut(s) 53, 64, 184, 452, 1137
BshNI GGYRCC 3 cut(s) 460, 772, 1098
BsiEI CGRYCG 1 cut(s) 185
BsiHKCI CYCGRG 2 cut(s) 281, 1085
BsiSI CCGG 2 cut(s) 185, 267
BslI CCNNNNNNNGG 3 cut(s) 60, 929, 1111
BsmAI GTCTC 1 cut(s) 1223
BsmI GAATGC 1 cut(s) 578
BsnI GGCC 5 cut(s) 53, 64, 184, 452, 1137
BsoBI CYCGRG 2 cut(s) 281, 1085
Bsp143I GATC 7 cut(s) 10, 18, 178, 317, 331, 685, 1154
Bsp1720I GCTNAGC 1 cut(s) 838
Bsp19I CCATGG 1 cut(s) 768
BspACI CCGC 6 cut(s) 65, 522, 525, 715, 802, 805
BspANI GGCC 5 cut(s) 53, 64, 184, 452, 1137
BspCNI CTCAG 5 cut(s) 72, 457, 851, 1154, 1219
BspFNI CGCG 2 cut(s) 807, 856
BspHI TCATGA 1 cut(s) 1021
BspLI GGNNCC 3 cut(s) 462, 774, 1100
BspMAI CTGCAG 1 cut(s) 631
BspPI GGATC 4 cut(s) 26, 325, 680, 1162
BspT107I GGYRCC 3 cut(s) 460, 772, 1098
BsrBI CCGCTC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 832
BsrFI RCCGGY 1 cut(s) 184
BsrI ACTGG 6 cut(s) 20, 209, 431, 981, 1165, 1274
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 384, 768
BssMI GATC 7 cut(s) 10, 18, 178, 317, 331, 685, 1154
BssT1I CCWWGG 2 cut(s) 384, 768
Bst2UI CCWGG 2 cut(s) 477, 560
Bst4CI ACNGT 2 cut(s) 1248, 1307
Bst6I CTCTTC 2 cut(s) 426, 919
BstAPI GCANNNNNTGC 2 cut(s) 668, 827
BstBAI YACGTR 1 cut(s) 845
BstC8I GCNNGC 5 cut(s) 540, 631, 660, 664, 777
BstDEI CTNAG 5 cut(s) 59, 465, 838, 1141, 1227
BstDSI CCRYGG 1 cut(s) 768
BstF5I GGATG 6 cut(s) 798, 813, 866, 937, 977, 1075
BstFNI CGCG 2 cut(s) 807, 856
BstHHI GCGC 4 cut(s) 119, 355, 809, 856
BstKTI GATC 7 cut(s) 13, 21, 181, 320, 334, 688, 1157
BstMAI GTCTC 1 cut(s) 1223
BstMBI GATC 7 cut(s) 10, 18, 178, 317, 331, 685, 1154
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 6 cut(s) 64, 190, 659, 668, 827, 1232
BstNI CCWGG 2 cut(s) 477, 560
BstNSI RCATGY 2 cut(s) 542, 793
BstSCI CCNGG 2 cut(s) 475, 558
BstSFI CTRYAG 1 cut(s) 627
BstUI CGCG 2 cut(s) 807, 856
BstV1I GCAGC 4 cut(s) 723, 748, 833, 949
BstV2I GAAGAC 1 cut(s) 1308
BstX2I RGATCY 3 cut(s) 18, 331, 1154
BstXI CCANNNNNNTGG 1 cut(s) 368
BstYI RGATCY 3 cut(s) 18, 331, 1154
BstZI CGGCCG 1 cut(s) 182
BsuRI GGCC 5 cut(s) 53, 64, 184, 452, 1137
BtgI CCRYGG 1 cut(s) 768
BtsCI GGATG 6 cut(s) 798, 813, 866, 937, 977, 1075
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 4 cut(s) 13, 147, 1281, 1312
Cac8I GCNNGC 5 cut(s) 540, 631, 660, 664, 777
CciI TCATGA 1 cut(s) 1021
CfoI GCGC 4 cut(s) 119, 355, 809, 856
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 343
Csp6I GTAC 1 cut(s) 461
CviAII CATG 8 cut(s) 323, 350, 418, 454, 539, 769, 790, 1022
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 5 cut(s) 59, 465, 838, 1141, 1227
DpnI GATC 7 cut(s) 12, 20, 180, 319, 333, 687, 1156
DpnII GATC 7 cut(s) 10, 18, 178, 317, 331, 685, 1154
DraI TTTAAA 1 cut(s) 441
EaeI YGGCCR 3 cut(s) 182, 450, 1135
EagI CGGCCG 1 cut(s) 182
Eam1104I CTCTTC 2 cut(s) 426, 919
EarI CTCTTC 2 cut(s) 426, 919
EciI GGCGGA 2 cut(s) 540, 791
EclXI CGGCCG 1 cut(s) 182
Eco130I CCWWGG 2 cut(s) 384, 768
Eco47I GGWCC 1 cut(s) 343
Eco52I CGGCCG 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 758
Eco72I CACGTG 1 cut(s) 845
Eco88I CYCGRG 2 cut(s) 281, 1085
EcoRII CCWGG 2 cut(s) 475, 558
EcoT14I CCWWGG 2 cut(s) 384, 768
EcoT22I ATGCAT 2 cut(s) 544, 868
ErhI CCWWGG 2 cut(s) 384, 768
FaeI CATG 8 cut(s) 326, 353, 421, 457, 542, 772, 793, 1025
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FatI CATG 8 cut(s) 322, 349, 417, 453, 538, 768, 789, 1021
FauNDI CATATG 1 cut(s) 1219
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 8 cut(s) 65, 523, 712, 715, 762, 805, 822, 963
FokI GGATG 6 cut(s) 785, 800, 853, 924, 964, 1082
Fsp4HI GCNGC 8 cut(s) 65, 523, 712, 715, 762, 805, 822, 963
FspBI CTAG 2 cut(s) 71, 872
GlaI GCGC 4 cut(s) 118, 354, 808, 855
GluI GCNGC 8 cut(s) 65, 523, 712, 715, 762, 805, 822, 963
GsaI CCCAGC 2 cut(s) 83, 821
GsuI CTGGAG 1 cut(s) 715
HaeIII GGCC 5 cut(s) 53, 64, 184, 452, 1137
HapII CCGG 2 cut(s) 185, 267
HhaI GCGC 4 cut(s) 119, 355, 809, 856
Hin1II CATG 8 cut(s) 326, 353, 421, 457, 542, 772, 793, 1025
Hin6I GCGC 4 cut(s) 117, 353, 807, 854
HinP1I GCGC 4 cut(s) 117, 353, 807, 854
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 4 cut(s) 528, 565, 621, 1083
HpaII CCGG 2 cut(s) 185, 267
HphI GGTGA 1 cut(s) 578
Hpy188I TCNGA 4 cut(s) 43, 310, 703, 1261
Hpy188III TCNNGA 4 cut(s) 369, 569, 1022, 1143
HpyAV CCTTC 2 cut(s) 596, 1105
HpyCH4III ACNGT 2 cut(s) 1248, 1307
HpyCH4IV ACGT 1 cut(s) 844
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 190, 659, 668, 827, 1232
HpyF3I CTNAG 5 cut(s) 59, 465, 838, 1141, 1227
HpySE526I ACGT 1 cut(s) 844
Hsp92II CATG 8 cut(s) 326, 353, 421, 457, 542, 772, 793, 1025
HspAI GCGC 4 cut(s) 117, 353, 807, 854
KpnI GGTACC 1 cut(s) 464
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 7 cut(s) 10, 18, 178, 317, 331, 685, 1154
LmnI GCTCC 2 cut(s) 72, 484
Lsp1109I GCAGC 4 cut(s) 723, 748, 833, 949
LweI GCATC 5 cut(s) 253, 551, 875, 1015, 1300
MaeI CTAG 2 cut(s) 71, 872
MaeII ACGT 1 cut(s) 844
MaeIII GTNAC 6 cut(s) 220, 246, 857, 1119, 1169, 1198
MalI GATC 7 cut(s) 12, 20, 180, 319, 333, 687, 1156
MbiI CCGCTC 1 cut(s) 67
MboI GATC 7 cut(s) 10, 18, 178, 317, 331, 685, 1154
MboII GAAGA 5 cut(s) 443, 562, 584, 906, 1313
MflI RGATCY 3 cut(s) 18, 331, 1154
MlsI TGGCCA 1 cut(s) 1137
MluCI AATT 7 cut(s) 95, 272, 311, 554, 597, 1017, 1327
MluNI TGGCCA 1 cut(s) 1137
MlyI GAGTC 1 cut(s) 1077
Mox20I TGGCCA 1 cut(s) 1137
Mph1103I ATGCAT 2 cut(s) 544, 868
MroXI GAANNNNTTC 1 cut(s) 554
MscI TGGCCA 1 cut(s) 1137
MseI TTAA 4 cut(s) 357, 440, 1092, 1326
MslI CAYNNNNRTG 1 cut(s) 452
Msp20I TGGCCA 1 cut(s) 1137
MspA1I CMGCKG 2 cut(s) 79, 239
MspI CCGG 2 cut(s) 185, 267
MspR9I CCNGG 2 cut(s) 477, 560
Mva1269I GAATGC 1 cut(s) 578
MvaI CCWGG 2 cut(s) 477, 560
MvnI CGCG 2 cut(s) 807, 856
MwoI GCNNNNNNNGC 6 cut(s) 64, 190, 659, 668, 827, 1232
NcoI CCATGG 1 cut(s) 768
NdeI CATATG 1 cut(s) 1219
NdeII GATC 7 cut(s) 10, 18, 178, 317, 331, 685, 1154
NlaIII CATG 8 cut(s) 326, 353, 421, 457, 542, 772, 793, 1025
NlaIV GGNNCC 3 cut(s) 462, 774, 1100
NmeAIII GCCGAG 1 cut(s) 634
NmuCI GTSAC 2 cut(s) 1119, 1169
NsiI ATGCAT 2 cut(s) 544, 868
NspI RCATGY 2 cut(s) 542, 793
PaeI GCATGC 1 cut(s) 542
PaeR7I CTCGAG 1 cut(s) 281
PagI TCATGA 1 cut(s) 1021
PctI GAATGC 1 cut(s) 578
PdmI GAANNNNTTC 1 cut(s) 554
PfeI GAWTC 3 cut(s) 528, 565, 621
PfoI TCCNGGA 1 cut(s) 558
PkrI GCNGC 8 cut(s) 66, 524, 713, 716, 763, 806, 823, 964
PleI GAGTC 1 cut(s) 1077
PmaCI CACGTG 1 cut(s) 845
PmlI CACGTG 1 cut(s) 845
PpsI GAGTC 1 cut(s) 1077
Ppu21I YACGTR 1 cut(s) 845
Psp6I CCWGG 2 cut(s) 475, 558
PspCI CACGTG 1 cut(s) 845
PspFI CCCAGC 2 cut(s) 79, 817
PspGI CCWGG 2 cut(s) 475, 558
PspN4I GGNNCC 3 cut(s) 462, 774, 1100
PspPI GGNCC 1 cut(s) 343
PspXI VCTCGAGB 1 cut(s) 281
PstI CTGCAG 1 cut(s) 631
PsuI RGATCY 3 cut(s) 18, 331, 1154
PvuII CAGCTG 2 cut(s) 79, 239
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 4 cut(s) 357, 440, 1092, 1326
SatI GCNGC 8 cut(s) 65, 523, 712, 715, 762, 805, 822, 963
Sau3AI GATC 7 cut(s) 10, 18, 178, 317, 331, 685, 1154
Sau96I GGNCC 1 cut(s) 343
SbfI CCTGCAGG 1 cut(s) 631
SchI GAGTC 1 cut(s) 1077
ScrFI CCNGG 2 cut(s) 477, 560
SdaI CCTGCAGG 1 cut(s) 631
SfaNI GCATC 5 cut(s) 253, 551, 875, 1015, 1300
SfcI CTRYAG 1 cut(s) 627
Sfr274I CTCGAG 1 cut(s) 281
SinI GGWCC 1 cut(s) 343
SlaI CTCGAG 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SphI GCATGC 1 cut(s) 542
Sse8387I CCTGCAGG 1 cut(s) 631
Sse9I AATT 7 cut(s) 95, 272, 311, 554, 597, 1017, 1327
SsiI CCGC 6 cut(s) 65, 522, 525, 715, 802, 805
SspI AATATT 2 cut(s) 751, 1289
SspMI CTAG 2 cut(s) 71, 872
StyD4I CCNGG 2 cut(s) 475, 558
StyI CCWWGG 2 cut(s) 384, 768
TaaI ACNGT 2 cut(s) 1248, 1307
TaiI ACGT 1 cut(s) 847
TaqI TCGA 5 cut(s) 165, 282, 876, 917, 1109
TasI AATT 7 cut(s) 95, 272, 311, 554, 597, 1017, 1327
TauI GCSGC 4 cut(s) 67, 525, 717, 807
TfiI GAWTC 3 cut(s) 528, 565, 621
Tru1I TTAA 4 cut(s) 357, 440, 1092, 1326
Tru9I TTAA 4 cut(s) 357, 440, 1092, 1326
TscAI CASTG 4 cut(s) 20, 154, 1281, 1312
TseFI GTSAC 2 cut(s) 1119, 1169
TseI GCWGC 4 cut(s) 711, 761, 821, 962
Tsp45I GTSAC 2 cut(s) 1119, 1169
TspDTI ATGAA 2 cut(s) 571, 1010
TspRI CASTG 4 cut(s) 20, 154, 1281, 1312
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 3 cut(s) 311, 554, 1017
XceI RCATGY 2 cut(s) 542, 793
XhoI CTCGAG 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 554
XspI CTAG 2 cut(s) 71, 872
Zsp2I ATGCAT 2 cut(s) 544, 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.