Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002777

Physical Location & Seq

Genomic Coordinates Forward (+)

8567488 .. 8570291

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g10200.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGGATGGGCAAACATCTGCAAAAGACGCATGAAAGTATGCACTGTTGCTTTTCTGATATACCTAGATTACAAGACTTTGCAGCAAAGAGAGAAATGGGCTAACAAAACTAAAACAGATGCTTTATGGGAAAATGCACATAAGCGAAATGCTAAACGTGTTCTCCGTTTGATAGTGGAGTTGGAAGGTTTGTGGGTGAAACTTGGGCAGTATCTGTCTACACGGGCAGATGTACTTCCTGAGGCATACATACGCCTTCTCAAGCAATTGCAGGACTCTCTTCCTCCTCGTCCTTTAGAAGAGGTTTGTCGAACTATACAGAAAGAGTTGGGGAAATCAATGAACGAGTTGTTCTTAGATTTTGTAAATGTTCCTTTGGCAACAGCATCAATAGCACAAGTCCACCGTGCCACCCTGCTCAACGGGCGGGAAGTAGTTGTTAAAGTTCAACATGAGGGCATCAAGACAATTATATTGGAGGACTTGAAGAATGCAAAGTCAATTGTTGACTGGATAGCATGGGCAGAGCCTCAGTACAATTTTAATCCTATGATAGATGAATGGTGCAAAGAATCTCCCAAAGAACTTGACTTCAATCATGAAGCTGAGAACACCAGAACAGTGGCAAAAAATCTTGGCTGCAATACCAAATGTGATGATAACACACGCGCCGATCGAGTGGATGTTTTGATTCCAGAGGTTATTCAGTCAACAGAGAAAGTCCTAATTTCAGAGTTTATGGATGGTATTCGGATAAATGACATAGAAGCGCTGGAAGAATTTGGTGTTGACAAACAAAAGGTTGTTGAAGAAATCACACGTGCTTATGCCCATCAAATGTATGTTGATGGGTTTTTTAATGGAGACCCTCATCCTGGAAACTTTCTTGTGAGCAAGGAACCTCCATATCGTCCTATTTTGCTTGACTTTGGGCTTACAAAGAAATTATCAAGCTCTTTTAAAAAAGCACTAGCAAAGATGTTCTTGGCATCTACCGAGGGGGACCATGTTGCTCTATTGTCTGCCTTTGCAGAAATGGGACTTAAGTTGCGCCTAGATATTCCAGAGCAGGCAATGGAGATAACAACTGTATTCTTCCGAAGTACAACACCTGCCAAAGAGTCTAGTGAAACAATGAAATCTATGGTGGATCAAAGAGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1 Beta-lactamase WaaY

Protein Analysis

389

Amino Acids

44.38

Weight (kDa)

6.44

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24810 AT5G24810
fragaria_vesca	FvH4_2g36370 FvH4_2g36370 FvH4_2g36370 FvH4_2g36372
malus_domestica	MD08G1123100.v1.1 MD15G1100800.v1.1 MD15G1102100.v1.1
prunus_persica	Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1
pyrus_communis	pycom08g10200 pycom08g10210 pycom15g09330
rosa_chinensis	RchiOBHm_Chr6g0305511
rosa_laevigata	RLG00000010882 RLG00000010885
rosa_multiflora	Rmu_co8395109.1_g000001 Rmu_sc0001809.1_g000002 Rmu_sc0001809.1_g000004 Rmu_sc0029548.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162720 Rroxscaffold_7G00162740
rosa_rugosa	Rorug06G0340800.1 Rorug06G0341000 Rorug06G0341100
rosa_samantha	Rh6AG453000 Rh6AG453200 Rh6BG448600 Rh6BG448800 Rh6CG466700 Rh6CG467000 Rh6DG453400 Rh6DG453600
rosa_wichuraiana	Rw6G039470 Rw6G039490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1120
Acc36I	ACCTGC	1 cut(s)	1120
AccI	GTMKAC	1 cut(s)	218
AccII	CGCG	1 cut(s)	669
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	1 cut(s)	1158
AcsI	RAATTY	1 cut(s)	779
AcvI	CACGTG	1 cut(s)	821
AfaI	GTAC	3 cut(s)	234, 536, 1105
AfeI	AGCGCT	1 cut(s)	771
AfiI	CCNNNNNNNGG	1 cut(s)	875
AflII	CTTAAG	1 cut(s)	1043
AflIII	ACRYGT	2 cut(s)	157, 818
AgsI	TTSAA	4 cut(s)	449, 487, 595, 809
AjnI	CCWGG	1 cut(s)	874
AluBI	AGCT	2 cut(s)	605, 954
AluI	AGCT	2 cut(s)	605, 954
Alw26I	GTCTC	1 cut(s)	858
AlwI	GGATC	1 cut(s)	1158
AlwNI	CAGNNNCTG	1 cut(s)	214
Aor51HI	AGCGCT	1 cut(s)	771
ApeKI	GCWGC	2 cut(s)	82, 639
ApoI	RAATTY	1 cut(s)	779
AspLEI	GCGC	3 cut(s)	671, 772, 1053
AspS9I	GGNCC	1 cut(s)	1003
AsuHPI	GGTGA	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	1003
AxyI	CCTNAGG	1 cut(s)	240
BbrPI	CACGTG	1 cut(s)	821
BbvI	GCAGC	2 cut(s)	94, 626
BccI	CCATC	3 cut(s)	737, 840, 842
BciT130I	CCWGG	1 cut(s)	876
BcoDI	GTCTC	1 cut(s)	858
BfaI	CTAG	4 cut(s)	65, 971, 1055, 1125
BfoI	RGCGCY	1 cut(s)	773
BfrI	CTTAAG	1 cut(s)	1043
BfuAI	ACCTGC	1 cut(s)	1120
BisI	GCNGC	2 cut(s)	83, 640
BlsI	GCNGC	2 cut(s)	84, 641
Bme1390I	CCNGG	1 cut(s)	876
Bme18I	GGWCC	1 cut(s)	1003
BmgT120I	GGNCC	1 cut(s)	1003
BmiI	GGNNCC	2 cut(s)	900, 1004
BmrFI	CCNGG	1 cut(s)	876
BmsI	GCATC	4 cut(s)	109, 395, 468, 998
BpuEI	CTTGAG	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	821
BsaI	GGTCTC	1 cut(s)	858
BsaJI	CCNNGG	1 cut(s)	996
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	875
Bse1I	ACTGG	1 cut(s)	515
Bse21I	CCTNAGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	1080
BseBI	CCWGG	1 cut(s)	876
BseDI	CCNNGG	1 cut(s)	996
BseGI	GGATG	4 cut(s)	11, 688, 748, 871
BseLI	CCNNNNNNNGG	1 cut(s)	875
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	3 cut(s)	231, 545, 597
BseNI	ACTGG	1 cut(s)	515
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	94, 626
Bsh1236I	CGCG	1 cut(s)	669
Bsh1285I	CGRYCG	1 cut(s)	676
BsiEI	CGRYCG	1 cut(s)	676
BslFI	GGGAC	2 cut(s)	1016, 1053
BslI	CCNNNNNNNGG	1 cut(s)	875
BsmAI	GTCTC	1 cut(s)	858
BsmFI	GGGAC	2 cut(s)	1016, 1053
BsmI	GAATGC	1 cut(s)	496
Bso31I	GGTCTC	1 cut(s)	858
Bsp143I	GATC	2 cut(s)	673, 1150
BspACI	CCGC	1 cut(s)	427
BspCNI	CTCAG	3 cut(s)	232, 544, 598
BspFNI	CGCG	1 cut(s)	669
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	900, 1004
BspMI	ACCTGC	1 cut(s)	1120
BspPI	GGATC	1 cut(s)	1158
BspTI	CTTAAG	1 cut(s)	1043
BspTNI	GGTCTC	1 cut(s)	858
BsrDI	GCAATG	1 cut(s)	1080
BsrI	ACTGG	1 cut(s)	515
BssECI	CCNNGG	1 cut(s)	996
BssMI	GATC	2 cut(s)	673, 1150
Bst2UI	CCWGG	1 cut(s)	876
Bst4CI	ACNGT	4 cut(s)	46, 407, 622, 1090
Bst6I	CTCTTC	2 cut(s)	285, 294
BstAFI	CTTAAG	1 cut(s)	1043
BstBAI	YACGTR	1 cut(s)	821
BstC8I	GCNNGC	1 cut(s)	1071
BstDEI	CTNAG	4 cut(s)	240, 355, 531, 606
BstF5I	GGATG	4 cut(s)	11, 688, 748, 871
BstFNI	CGCG	1 cut(s)	669
BstH2I	RGCGCY	1 cut(s)	773
BstHHI	GCGC	3 cut(s)	671, 772, 1053
BstKTI	GATC	2 cut(s)	676, 1153
BstMAI	GTCTC	1 cut(s)	858
BstMBI	GATC	2 cut(s)	673, 1150
BstMCI	CGRYCG	1 cut(s)	676
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 392, 424
BstNI	CCWGG	1 cut(s)	876
BstSCI	CCNGG	1 cut(s)	874
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	94, 626
BstXI	CCANNNNNNTGG	1 cut(s)	622
Bsu36I	CCTNAGG	1 cut(s)	240
BtsCI	GGATG	4 cut(s)	11, 688, 748, 871
BtsIMutI	CAGTG	2 cut(s)	42, 627
BveI	ACCTGC	1 cut(s)	1120
Cac8I	GCNNGC	1 cut(s)	1071
CaiI	CAGNNNCTG	1 cut(s)	214
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	3 cut(s)	671, 772, 1053
Cfr13I	GGNCC	1 cut(s)	1003
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	3 cut(s)	233, 535, 1104
CviAII	CATG	5 cut(s)	31, 452, 519, 599, 1007
CviJI	RGCY	6 cut(s)	101, 529, 605, 639, 934, 954
CviKI_1	RGCY	6 cut(s)	101, 529, 605, 639, 934, 954
CviQI	GTAC	3 cut(s)	233, 535, 1104
DdeI	CTNAG	4 cut(s)	240, 355, 531, 606
DpnI	GATC	2 cut(s)	675, 1152
DpnII	GATC	2 cut(s)	673, 1150
DraI	TTTAAA	1 cut(s)	961
Eam1104I	CTCTTC	2 cut(s)	285, 294
EarI	CTCTTC	2 cut(s)	285, 294
Eco31I	GGTCTC	1 cut(s)	858
Eco47I	GGWCC	1 cut(s)	1003
Eco47III	AGCGCT	1 cut(s)	771
Eco72I	CACGTG	1 cut(s)	821
Eco81I	CCTNAGG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	874
FaeI	CATG	5 cut(s)	34, 455, 522, 602, 1010
FalI	AAGNNNNNCTT	2 cut(s)	968, 1000
FaqI	GGGAC	2 cut(s)	1016, 1053
FatI	CATG	5 cut(s)	30, 451, 518, 598, 1006
FauI	CCCGC	1 cut(s)	420
FblI	GTMKAC	1 cut(s)	218
Fnu4HI	GCNGC	2 cut(s)	83, 640
FokI	GGATG	4 cut(s)	18, 695, 755, 858
Fsp4HI	GCNGC	2 cut(s)	83, 640
FspBI	CTAG	4 cut(s)	65, 971, 1055, 1125
GlaI	GCGC	3 cut(s)	670, 771, 1052
GluI	GCNGC	2 cut(s)	83, 640
HaeII	RGCGCY	1 cut(s)	773
HgaI	GACGC	1 cut(s)	36
HhaI	GCGC	3 cut(s)	671, 772, 1053
Hin1II	CATG	5 cut(s)	34, 455, 522, 602, 1010
Hin6I	GCGC	3 cut(s)	669, 770, 1051
HinP1I	GCGC	3 cut(s)	669, 770, 1051
HincII	GTYRAC	3 cut(s)	508, 711, 790
HindII	GTYRAC	3 cut(s)	508, 711, 790
HinfI	GANTC	4 cut(s)	275, 572, 691, 1121
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	5 cut(s)	219, 403, 508, 711, 790
Hpy188I	TCNGA	4 cut(s)	57, 733, 753, 1100
Hpy188III	TCNNGA	5 cut(s)	239, 463, 599, 695, 1064
Hpy8I	GTNNAC	5 cut(s)	219, 403, 508, 711, 790
HpyAV	CCTTC	2 cut(s)	179, 266
HpyCH4III	ACNGT	4 cut(s)	46, 407, 622, 1090
HpyCH4IV	ACGT	2 cut(s)	157, 820
HpyCH4V	TGCA	9 cut(s)	21, 42, 82, 137, 271, 494, 567, 642, 1031
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 392, 424
HpyF3I	CTNAG	4 cut(s)	240, 355, 531, 606
HpySE526I	ACGT	2 cut(s)	157, 820
Hsp92II	CATG	5 cut(s)	34, 455, 522, 602, 1010
HspAI	GCGC	3 cut(s)	669, 770, 1051
Kzo9I	GATC	2 cut(s)	673, 1150
Lsp1109I	GCAGC	2 cut(s)	94, 626
LweI	GCATC	4 cut(s)	109, 395, 468, 998
MaeI	CTAG	4 cut(s)	65, 971, 1055, 1125
MaeII	ACGT	2 cut(s)	157, 820
MalI	GATC	2 cut(s)	675, 1152
MboI	GATC	2 cut(s)	673, 1150
MboII	GAAGA	6 cut(s)	272, 311, 499, 788, 821, 1087
MfeI	CAATTG	2 cut(s)	266, 501
MluCI	AATT	8 cut(s)	266, 468, 501, 538, 726, 779, 944, 1162
MlyI	GAGTC	2 cut(s)	269, 1130
MmeI	TCCRAC	1 cut(s)	162
MseI	TTAA	6 cut(s)	441, 543, 858, 960, 1044, 1165
MspCI	CTTAAG	1 cut(s)	1043
MspR9I	CCNGG	1 cut(s)	876
MunI	CAATTG	2 cut(s)	266, 501
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	1 cut(s)	876
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	3 cut(s)	27, 392, 424
NdeII	GATC	2 cut(s)	673, 1150
NlaIII	CATG	5 cut(s)	34, 455, 522, 602, 1010
NlaIV	GGNNCC	2 cut(s)	900, 1004
PagI	TCATGA	1 cut(s)	598
PaqCI	CACCTGC	1 cut(s)	1120
PcsI	WCGNNNNNNNCGW	2 cut(s)	163, 673
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	572, 691
PfoI	TCCNGGA	1 cut(s)	874
PkrI	GCNGC	2 cut(s)	84, 641
Ple19I	CGATCG	1 cut(s)	676
PleI	GAGTC	2 cut(s)	269, 1129
PmaCI	CACGTG	1 cut(s)	821
PmlI	CACGTG	1 cut(s)	821
PpsI	GAGTC	2 cut(s)	269, 1129
Ppu21I	YACGTR	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	874
PspCI	CACGTG	1 cut(s)	821
PspGI	CCWGG	1 cut(s)	874
PspN4I	GGNNCC	2 cut(s)	900, 1004
PspPI	GGNCC	1 cut(s)	1003
PstNI	CAGNNNCTG	1 cut(s)	214
PvuI	CGATCG	1 cut(s)	676
RsaI	GTAC	3 cut(s)	234, 536, 1105
RsaNI	GTAC	3 cut(s)	233, 535, 1104
SaqAI	TTAA	6 cut(s)	441, 543, 858, 960, 1044, 1165
SatI	GCNGC	2 cut(s)	83, 640
Sau3AI	GATC	2 cut(s)	673, 1150
Sau96I	GGNCC	1 cut(s)	1003
SchI	GAGTC	2 cut(s)	269, 1130
ScrFI	CCNGG	1 cut(s)	876
SfaNI	GCATC	4 cut(s)	109, 395, 468, 998
SinI	GGWCC	1 cut(s)	1003
SmlI	CTYRAG	2 cut(s)	260, 1043
SmoI	CTYRAG	2 cut(s)	260, 1043
Sse9I	AATT	8 cut(s)	266, 468, 501, 538, 726, 779, 944, 1162
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	4 cut(s)	65, 971, 1055, 1125
StyD4I	CCNGG	1 cut(s)	874
TaaI	ACNGT	4 cut(s)	46, 407, 622, 1090
TaiI	ACGT	2 cut(s)	160, 823
TaqI	TCGA	2 cut(s)	310, 676
TasI	AATT	8 cut(s)	266, 468, 501, 538, 726, 779, 944, 1162
TatI	WGTACW	3 cut(s)	232, 534, 1103
TfiI	GAWTC	2 cut(s)	572, 691
Tru1I	TTAA	6 cut(s)	441, 543, 858, 960, 1044, 1165
Tru9I	TTAA	6 cut(s)	441, 543, 858, 960, 1044, 1165
TscAI	CASTG	2 cut(s)	49, 627
TseI	GCWGC	2 cut(s)	82, 639
TspDTI	ATGAA	5 cut(s)	47, 356, 573, 615, 1151
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	2 cut(s)	49, 627
Vha464I	CTTAAG	1 cut(s)	1043
VpaK11BI	GGWCC	1 cut(s)	1003
XapI	RAATTY	1 cut(s)	779
XmiI	GTMKAC	1 cut(s)	218
XspI	CTAG	4 cut(s)	65, 971, 1055, 1125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.