domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G24810 AT5G24810 |
| fragaria_vesca | FvH4_2g36370 FvH4_2g36370 FvH4_2g36370 FvH4_2g36372 |
| malus_domestica | MD08G1123100.v1.1 MD15G1100800.v1.1 MD15G1102100.v1.1 |
| prunus_persica | Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1 |
| pyrus_communis | pycom08g10200 pycom08g10210 pycom15g09330 |
| rosa_chinensis | RchiOBHm_Chr6g0305511 |
| rosa_laevigata | RLG00000010882 RLG00000010885 |
| rosa_multiflora | Rmu_co8395109.1_g000001 Rmu_sc0001809.1_g000002 Rmu_sc0001809.1_g000004 Rmu_sc0029548.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00162720 Rroxscaffold_7G00162740 |
| rosa_rugosa | Rorug06G0340800.1 Rorug06G0341000 Rorug06G0341100 |
| rosa_samantha | Rh6AG453000 Rh6AG453200 Rh6BG448600 Rh6BG448800 Rh6CG466700 Rh6CG467000 Rh6DG453400 Rh6DG453600 |
| rosa_wichuraiana | Rw6G039470 Rw6G039490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1420 |
| Acc36I | ACCTGC | 1 cut(s) | 1420 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1694, 2291 |
| AccBSI | CCGCTC | 1 cut(s) | 2084 |
| AccII | CGCG | 1 cut(s) | 667 |
| AccIII | TCCGGA | 1 cut(s) | 1748 |
| AciI | CCGC | 5 cut(s) | 1309, 1822, 2084, 2261, 2829 |
| AclWI | GGATC | 5 cut(s) | 1550, 1705, 2670, 2683, 2839 |
| AcoI | YGGCCR | 3 cut(s) | 1146, 1685, 1855 |
| AcsI | RAATTY | 5 cut(s) | 1691, 1931, 2541, 2578, 2816 |
| AcuI | CTGAAG | 1 cut(s) | 2169 |
| AcvI | CACGTG | 1 cut(s) | 821 |
| AfaI | GTAC | 2 cut(s) | 234, 1105 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 875, 1440, 1588, 1694, 2291, 2428, 2648 |
| AflIII | ACRYGT | 3 cut(s) | 157, 665, 818 |
| AgeI | ACCGGT | 1 cut(s) | 2474 |
| AjiI | CACGTC | 1 cut(s) | 1009 |
| AjnI | CCWGG | 7 cut(s) | 874, 1053, 1240, 1852, 1857, 2005, 2427 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 359, 391, 1615, 1647 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 335, 367 |
| Alw21I | GWGCWC | 3 cut(s) | 139, 2215, 2333 |
| Alw26I | GTCTC | 4 cut(s) | 858, 1128, 1327, 1838 |
| AlwI | GGATC | 5 cut(s) | 1550, 1705, 2670, 2683, 2839 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1841 |
| Ama87I | CYCGRG | 2 cut(s) | 2208, 2662 |
| Aor13HI | TCCGGA | 1 cut(s) | 1748 |
| AoxI | GGCC | 6 cut(s) | 1146, 1431, 1685, 1855, 2085, 2639 |
| ApaI | GGGCCC | 1 cut(s) | 2643 |
| ApeKI | GCWGC | 7 cut(s) | 82, 639, 1532, 2231, 2372, 2375, 2747 |
| ApoI | RAATTY | 5 cut(s) | 1691, 1931, 2541, 2578, 2816 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 457, 489, 932, 964 |
| AseI | ATTAAT | 1 cut(s) | 1368 |
| AsiGI | ACCGGT | 1 cut(s) | 2474 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 326 |
| AspLEI | GCGC | 2 cut(s) | 147, 1053 |
| AspS9I | GGNCC | 6 cut(s) | 1003, 1376, 1723, 2086, 2639, 2640 |
| AsuC2I | CCSGG | 1 cut(s) | 1589 |
| AsuHPI | GGTGA | 4 cut(s) | 208, 1256, 1955, 2325 |
| AsuII | TTCGAA | 1 cut(s) | 2630 |
| AvaI | CYCGRG | 2 cut(s) | 2208, 2662 |
| AvaII | GGWCC | 3 cut(s) | 1003, 1376, 1723 |
| AxyI | CCTNAGG | 1 cut(s) | 240 |
| BaeGI | GKGCMC | 1 cut(s) | 2643 |
| BalI | TGGCCA | 2 cut(s) | 1687, 1857 |
| BamHI | GGATCC | 1 cut(s) | 2675 |
| BanII | GRGCYC | 3 cut(s) | 2215, 2333, 2643 |
| BauI | CACGAG | 2 cut(s) | 1263, 2455 |
| BbrPI | CACGTG | 1 cut(s) | 821 |
| Bbv12I | GWGCWC | 3 cut(s) | 139, 2215, 2333 |
| BbvCI | CCTCAGC | 2 cut(s) | 996, 1439 |
| BbvI | GCAGC | 7 cut(s) | 94, 626, 1519, 2243, 2359, 2362, 2734 |
| BciT130I | CCWGG | 7 cut(s) | 876, 1055, 1242, 1854, 1859, 2007, 2429 |
| BciVI | GTATCC | 1 cut(s) | 2328 |
| BclI | TGATCA | 3 cut(s) | 673, 1390, 2853 |
| BcnI | CCSGG | 1 cut(s) | 1589 |
| BcoDI | GTCTC | 4 cut(s) | 858, 1128, 1327, 1838 |
| BfaI | CTAG | 2 cut(s) | 971, 1451 |
| BfuAI | ACCTGC | 1 cut(s) | 1420 |
| BfuI | GTATCC | 1 cut(s) | 2328 |
| BglII | AGATCT | 1 cut(s) | 2523 |
| BisI | GCNGC | 8 cut(s) | 83, 640, 1533, 2085, 2232, 2373, 2376, 2748 |
| BlpI | GCTNAGC | 2 cut(s) | 2072, 2203 |
| BlsI | GCNGC | 8 cut(s) | 84, 641, 1534, 2086, 2233, 2374, 2377, 2749 |
| Bme1390I | CCNGG | 8 cut(s) | 876, 1055, 1242, 1589, 1854, 1859, 2007, 2429 |
| Bme18I | GGWCC | 3 cut(s) | 1003, 1376, 1723 |
| BmeT110I | CYCGRG | 2 cut(s) | 2208, 2662 |
| BmgBI | CACGTC | 1 cut(s) | 1009 |
| BmgT120I | GGNCC | 6 cut(s) | 1003, 1376, 1723, 2086, 2639, 2640 |
| BmiI | GGNNCC | 6 cut(s) | 900, 1004, 1377, 2641, 2642, 2677 |
| BmrFI | CCNGG | 8 cut(s) | 876, 1055, 1242, 1589, 1854, 1859, 2007, 2429 |
| BmrI | ACTGGG | 2 cut(s) | 1813, 2789 |
| BmsI | GCATC | 7 cut(s) | 395, 468, 998, 1179, 1222, 1928, 2539 |
| BmuI | ACTGGG | 2 cut(s) | 1813, 2789 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2486 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2795, 2827 |
| BpmI | CTGGAG | 3 cut(s) | 1557, 1682, 1989 |
| Bpu10I | CCTNAGC | 2 cut(s) | 996, 1439 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2072, 2203 |
| Bpu14I | TTCGAA | 1 cut(s) | 2630 |
| BpuMI | CCSGG | 1 cut(s) | 1589 |
| BsaAI | YACGTR | 1 cut(s) | 821 |
| BsaI | GGTCTC | 2 cut(s) | 858, 1327 |
| BsaJI | CCNNGG | 1 cut(s) | 2679 |
| BsaWI | WCCGGW | 2 cut(s) | 1748, 2474 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1476, 1506 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 875, 1440, 1588, 1694, 2291, 2428, 2648 |
| Bse118I | RCCGGY | 1 cut(s) | 2474 |
| Bse1I | ACTGG | 8 cut(s) | 515, 777, 1565, 1651, 1808, 2653, 2758, 2795 |
| Bse21I | CCTNAGG | 1 cut(s) | 240 |
| Bse3DI | GCAATG | 5 cut(s) | 154, 1080, 1824, 2197, 2712 |
| BseAI | TCCGGA | 1 cut(s) | 1748 |
| BseBI | CCWGG | 7 cut(s) | 876, 1055, 1242, 1854, 1859, 2007, 2429 |
| BseDI | CCNNGG | 1 cut(s) | 2679 |
| BseGI | GGATG | 7 cut(s) | 11, 36, 349, 748, 871, 1745, 2093 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 875, 1440, 1588, 1694, 2291, 2428, 2648 |
| BseMI | GCAATG | 5 cut(s) | 154, 1080, 1824, 2197, 2712 |
| BseNI | ACTGG | 8 cut(s) | 515, 777, 1565, 1651, 1808, 2653, 2758, 2795 |
| BseRI | GAGGAG | 4 cut(s) | 276, 1823, 2263, 2266 |
| BseSI | GKGCMC | 1 cut(s) | 2643 |
| BseXI | GCAGC | 7 cut(s) | 94, 626, 1519, 2243, 2359, 2362, 2734 |
| BsgI | GTGCAG | 2 cut(s) | 1739, 2407 |
| Bsh1236I | CGCG | 1 cut(s) | 667 |
| BshFI | GGCC | 6 cut(s) | 1148, 1433, 1687, 1857, 2087, 2641 |
| BshTI | ACCGGT | 1 cut(s) | 2474 |
| BsiHKAI | GWGCWC | 3 cut(s) | 139, 2215, 2333 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2208, 2662 |
| BsiSI | CCGG | 3 cut(s) | 1589, 1749, 2475 |
| BslFI | GGGAC | 3 cut(s) | 1016, 1389, 2484 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 875, 1440, 1588, 1694, 2291, 2428, 2648 |
| BsmAI | GTCTC | 4 cut(s) | 858, 1128, 1327, 1838 |
| BsmFI | GGGAC | 3 cut(s) | 1016, 1389, 2484 |
| BsmI | GAATGC | 4 cut(s) | 496, 747, 1629, 1955 |
| BsnI | GGCC | 6 cut(s) | 1148, 1433, 1687, 1857, 2087, 2641 |
| Bso31I | GGTCTC | 2 cut(s) | 858, 1327 |
| BsoBI | CYCGRG | 2 cut(s) | 2208, 2662 |
| Bsp119I | TTCGAA | 1 cut(s) | 2630 |
| Bsp120I | GGGCCC | 1 cut(s) | 2639 |
| Bsp1286I | GDGCHC | 4 cut(s) | 139, 2215, 2333, 2643 |
| Bsp13I | TCCGGA | 1 cut(s) | 1748 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2072, 2203 |
| BspACI | CCGC | 5 cut(s) | 1309, 1822, 2084, 2261, 2829 |
| BspANI | GGCC | 6 cut(s) | 1148, 1433, 1687, 1857, 2087, 2641 |
| BspEI | TCCGGA | 1 cut(s) | 1748 |
| BspFNI | CGCG | 1 cut(s) | 667 |
| BspHI | TCATGA | 5 cut(s) | 139, 598, 1126, 1329, 2545 |
| BspLI | GGNNCC | 6 cut(s) | 900, 1004, 1377, 2641, 2642, 2677 |
| BspMI | ACCTGC | 1 cut(s) | 1420 |
| BspPI | GGATC | 5 cut(s) | 1550, 1705, 2670, 2683, 2839 |
| BspT104I | TTCGAA | 1 cut(s) | 2630 |
| BspTNI | GGTCTC | 2 cut(s) | 858, 1327 |
| BsrBI | CCGCTC | 1 cut(s) | 2084 |
| BsrDI | GCAATG | 5 cut(s) | 154, 1080, 1824, 2197, 2712 |
| BsrFI | RCCGGY | 1 cut(s) | 2474 |
| BsrI | ACTGG | 8 cut(s) | 515, 777, 1565, 1651, 1808, 2653, 2758, 2795 |
| BssAI | RCCGGY | 1 cut(s) | 2474 |
| BssECI | CCNNGG | 1 cut(s) | 2679 |
| BssSI | CACGAG | 2 cut(s) | 1263, 2455 |
| Bst2BI | CACGAG | 2 cut(s) | 1263, 2455 |
| Bst2UI | CCWGG | 7 cut(s) | 876, 1055, 1242, 1854, 1859, 2007, 2429 |
| Bst4CI | ACNGT | 3 cut(s) | 622, 2447, 2725 |
| Bst6I | CTCTTC | 2 cut(s) | 285, 294 |
| BstBAI | YACGTR | 1 cut(s) | 821 |
| BstBI | TTCGAA | 1 cut(s) | 2630 |
| BstC8I | GCNNGC | 6 cut(s) | 669, 1071, 1638, 1917, 2142, 2286 |
| BstDSI | CCRYGG | 1 cut(s) | 2679 |
| BstF5I | GGATG | 7 cut(s) | 11, 36, 349, 748, 871, 1745, 2093 |
| BstFNI | CGCG | 1 cut(s) | 667 |
| BstHHI | GCGC | 2 cut(s) | 147, 1053 |
| BstMAI | GTCTC | 4 cut(s) | 858, 1128, 1327, 1838 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 392, 424, 1633, 2068, 2466 |
| BstNI | CCWGG | 7 cut(s) | 876, 1055, 1242, 1854, 1859, 2007, 2429 |
| BstNSI | RCATGY | 2 cut(s) | 1919, 2158 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2486 |
| BstSCI | CCNGG | 8 cut(s) | 874, 1053, 1240, 1587, 1852, 1857, 2005, 2427 |
| BstSLI | GKGCMC | 1 cut(s) | 2643 |
| BstUI | CGCG | 1 cut(s) | 667 |
| BstV1I | GCAGC | 7 cut(s) | 94, 626, 1519, 2243, 2359, 2362, 2734 |
| BstX2I | RGATCY | 3 cut(s) | 2523, 2675, 2831 |
| BstYI | RGATCY | 3 cut(s) | 2523, 2675, 2831 |
| Bsu36I | CCTNAGG | 1 cut(s) | 240 |
| BsuI | GTATCC | 1 cut(s) | 2328 |
| BsuRI | GGCC | 6 cut(s) | 1148, 1433, 1687, 1857, 2087, 2641 |
| BtgI | CCRYGG | 1 cut(s) | 2679 |
| BtrI | CACGTC | 1 cut(s) | 1009 |
| BtsCI | GGATG | 7 cut(s) | 11, 36, 349, 748, 871, 1745, 2093 |
| BtsI | GCAGTG | 1 cut(s) | 1527 |
| BtsIMutI | CAGTG | 6 cut(s) | 627, 770, 1400, 1527, 1644, 2802 |
| BveI | ACCTGC | 1 cut(s) | 1420 |
| Cac8I | GCNNGC | 6 cut(s) | 669, 1071, 1638, 1917, 2142, 2286 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1841 |
| CciI | TCATGA | 5 cut(s) | 139, 598, 1126, 1329, 2545 |
| CfoI | GCGC | 2 cut(s) | 147, 1053 |
| Cfr10I | RCCGGY | 1 cut(s) | 2474 |
| Cfr13I | GGNCC | 6 cut(s) | 1003, 1376, 1723, 2086, 2639, 2640 |
| Csp6I | GTAC | 2 cut(s) | 233, 1104 |
| CspAI | ACCGGT | 1 cut(s) | 2474 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2668, 2703 |
| CviQI | GTAC | 2 cut(s) | 233, 1104 |
| DraI | TTTAAA | 3 cut(s) | 756, 961, 1818 |
| EaeI | YGGCCR | 3 cut(s) | 1146, 1685, 1855 |
| Eam1104I | CTCTTC | 2 cut(s) | 285, 294 |
| EarI | CTCTTC | 2 cut(s) | 285, 294 |
| Ecl136II | GAGCTC | 2 cut(s) | 2213, 2331 |
| Eco24I | GRGCYC | 3 cut(s) | 2215, 2333, 2643 |
| Eco31I | GGTCTC | 2 cut(s) | 858, 1327 |
| Eco32I | GATATC | 2 cut(s) | 1327, 2434 |
| Eco47I | GGWCC | 3 cut(s) | 1003, 1376, 1723 |
| Eco53kI | GAGCTC | 2 cut(s) | 2213, 2331 |
| Eco57I | CTGAAG | 1 cut(s) | 2169 |
| Eco72I | CACGTG | 1 cut(s) | 821 |
| Eco81I | CCTNAGG | 1 cut(s) | 240 |
| Eco88I | CYCGRG | 2 cut(s) | 2208, 2662 |
| EcoICRI | GAGCTC | 2 cut(s) | 2213, 2331 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2640 |
| EcoRI | GAATTC | 1 cut(s) | 2541 |
| EcoRII | CCWGG | 7 cut(s) | 874, 1053, 1240, 1852, 1857, 2005, 2427 |
| EcoRV | GATATC | 2 cut(s) | 1327, 2434 |
| EcoT22I | ATGCAT | 2 cut(s) | 1237, 1921 |
| EcoT38I | GRGCYC | 3 cut(s) | 2215, 2333, 2643 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 968, 1000 |
| FaqI | GGGAC | 3 cut(s) | 1016, 1389, 2484 |
| FauNDI | CATATG | 1 cut(s) | 826 |
| FbaI | TGATCA | 3 cut(s) | 673, 1390, 2853 |
| Fnu4HI | GCNGC | 8 cut(s) | 83, 640, 1533, 2085, 2232, 2373, 2376, 2748 |
| FokI | GGATG | 7 cut(s) | 18, 43, 356, 755, 858, 1732, 2080 |
| FriOI | GRGCYC | 3 cut(s) | 2215, 2333, 2643 |
| Fsp4HI | GCNGC | 8 cut(s) | 83, 640, 1533, 2085, 2232, 2373, 2376, 2748 |
| FspBI | CTAG | 2 cut(s) | 971, 1451 |
| GlaI | GCGC | 2 cut(s) | 146, 1052 |
| GluI | GCNGC | 8 cut(s) | 83, 640, 1533, 2085, 2232, 2373, 2376, 2748 |
| GsuI | CTGGAG | 3 cut(s) | 1557, 1682, 1989 |
| HaeIII | GGCC | 6 cut(s) | 1148, 1433, 1687, 1857, 2087, 2641 |
| HapII | CCGG | 3 cut(s) | 1589, 1749, 2475 |
| HhaI | GCGC | 2 cut(s) | 147, 1053 |
| Hin6I | GCGC | 2 cut(s) | 145, 1051 |
| HinP1I | GCGC | 2 cut(s) | 145, 1051 |
| HincII | GTYRAC | 3 cut(s) | 508, 711, 790 |
| HindII | GTYRAC | 3 cut(s) | 508, 711, 790 |
| HindIII | AAGCTT | 1 cut(s) | 2060 |
| HpaII | CCGG | 3 cut(s) | 1589, 1749, 2475 |
| HphI | GGTGA | 4 cut(s) | 208, 1256, 1955, 2325 |
| Hpy166II | GTNNAC | 3 cut(s) | 508, 711, 790 |
| Hpy188I | TCNGA | 7 cut(s) | 332, 733, 1283, 1423, 2328, 2782, 2836 |
| Hpy8I | GTNNAC | 3 cut(s) | 508, 711, 790 |
| Hpy99I | CGWCG | 2 cut(s) | 1013, 2172 |
| HpyAV | CCTTC | 9 cut(s) | 179, 266, 1165, 1973, 2110, 2193, 2359, 2626, 2751 |
| HpyCH4III | ACNGT | 3 cut(s) | 622, 2447, 2725 |
| HpyCH4IV | ACGT | 4 cut(s) | 157, 820, 1008, 2221 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 392, 424, 1633, 2068, 2466 |
| HpySE526I | ACGT | 4 cut(s) | 157, 820, 1008, 2221 |
| HspAI | GCGC | 2 cut(s) | 145, 1051 |
| Kpn2I | TCCGGA | 1 cut(s) | 1748 |
| Ksp22I | TGATCA | 3 cut(s) | 673, 1390, 2853 |
| LmnI | GCTCC | 3 cut(s) | 116, 1861, 2744 |
| Lsp1109I | GCAGC | 7 cut(s) | 94, 626, 1519, 2243, 2359, 2362, 2734 |
| LweI | GCATC | 7 cut(s) | 395, 468, 998, 1179, 1222, 1928, 2539 |
| MaeI | CTAG | 2 cut(s) | 971, 1451 |
| MaeII | ACGT | 4 cut(s) | 157, 820, 1008, 2221 |
| MaeIII | GTNAC | 4 cut(s) | 653, 1600, 2441, 2719 |
| MbiI | CCGCTC | 1 cut(s) | 2084 |
| MboII | GAAGA | 9 cut(s) | 272, 311, 499, 821, 1087, 1268, 1284, 1961, 2068 |
| MfeI | CAATTG | 2 cut(s) | 501, 2857 |
| MflI | RGATCY | 3 cut(s) | 2523, 2675, 2831 |
| MhlI | GDGCHC | 4 cut(s) | 139, 2215, 2333, 2643 |
| MlsI | TGGCCA | 2 cut(s) | 1687, 1857 |
| MluI | ACGCGT | 1 cut(s) | 665 |
| MluNI | TGGCCA | 2 cut(s) | 1687, 1857 |
| MlyI | GAGTC | 4 cut(s) | 269, 1130, 1275, 2506 |
| MmeI | TCCRAC | 1 cut(s) | 162 |
| Mox20I | TGGCCA | 2 cut(s) | 1687, 1857 |
| Mph1103I | ATGCAT | 2 cut(s) | 1237, 1921 |
| MroI | TCCGGA | 1 cut(s) | 1748 |
| MroXI | GAANNNNTTC | 1 cut(s) | 326 |
| MscI | TGGCCA | 2 cut(s) | 1687, 1857 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1422, 1829, 2717 |
| Msp20I | TGGCCA | 2 cut(s) | 1687, 1857 |
| MspA1I | CMGCKG | 1 cut(s) | 1619 |
| MspI | CCGG | 3 cut(s) | 1589, 1749, 2475 |
| MspR9I | CCNGG | 8 cut(s) | 876, 1055, 1242, 1589, 1854, 1859, 2007, 2429 |
| MssI | GTTTAAAC | 1 cut(s) | 1818 |
| MunI | CAATTG | 2 cut(s) | 501, 2857 |
| Mva1269I | GAATGC | 4 cut(s) | 496, 747, 1629, 1955 |
| MvaI | CCWGG | 7 cut(s) | 876, 1055, 1242, 1854, 1859, 2007, 2429 |
| MvnI | CGCG | 1 cut(s) | 667 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 392, 424, 1633, 2068, 2466 |
| NciI | CCSGG | 1 cut(s) | 1589 |
| NdeI | CATATG | 1 cut(s) | 826 |
| NlaIV | GGNNCC | 6 cut(s) | 900, 1004, 1377, 2641, 2642, 2677 |
| NmuCI | GTSAC | 3 cut(s) | 653, 2441, 2719 |
| NsiI | ATGCAT | 2 cut(s) | 1237, 1921 |
| NspI | RCATGY | 2 cut(s) | 1919, 2158 |
| NspV | TTCGAA | 1 cut(s) | 2630 |
| PaeI | GCATGC | 1 cut(s) | 1919 |
| PaeR7I | CTCGAG | 1 cut(s) | 2208 |
| PagI | TCATGA | 5 cut(s) | 139, 598, 1126, 1329, 2545 |
| PaqCI | CACCTGC | 1 cut(s) | 1420 |
| PctI | GAATGC | 4 cut(s) | 496, 747, 1629, 1955 |
| PdmI | GAANNNNTTC | 1 cut(s) | 326 |
| PfeI | GAWTC | 8 cut(s) | 572, 691, 767, 1346, 1905, 1942, 1998, 2015 |
| PflFI | GACNNNGTC | 1 cut(s) | 1007 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1694, 2291 |
| PfoI | TCCNGGA | 1 cut(s) | 874 |
| PinAI | ACCGGT | 1 cut(s) | 2474 |
| PkrI | GCNGC | 8 cut(s) | 84, 641, 1534, 2086, 2233, 2374, 2377, 2749 |
| PleI | GAGTC | 4 cut(s) | 269, 1129, 1274, 2505 |
| PmaCI | CACGTG | 1 cut(s) | 821 |
| PmeI | GTTTAAAC | 1 cut(s) | 1818 |
| PmlI | CACGTG | 1 cut(s) | 821 |
| PpsI | GAGTC | 4 cut(s) | 269, 1129, 1274, 2505 |
| Ppu21I | YACGTR | 1 cut(s) | 821 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2486 |
| PshBI | ATTAAT | 1 cut(s) | 1368 |
| Psp124BI | GAGCTC | 2 cut(s) | 2215, 2333 |
| Psp6I | CCWGG | 7 cut(s) | 874, 1053, 1240, 1852, 1857, 2005, 2427 |
| PspCI | CACGTG | 1 cut(s) | 821 |
| PspGI | CCWGG | 7 cut(s) | 874, 1053, 1240, 1852, 1857, 2005, 2427 |
| PspN4I | GGNNCC | 6 cut(s) | 900, 1004, 1377, 2641, 2642, 2677 |
| PspOMI | GGGCCC | 1 cut(s) | 2639 |
| PspPI | GGNCC | 6 cut(s) | 1003, 1376, 1723, 2086, 2639, 2640 |
| PspXI | VCTCGAGB | 1 cut(s) | 2208 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1841 |
| PsuI | RGATCY | 3 cut(s) | 2523, 2675, 2831 |
| PsyI | GACNNNGTC | 1 cut(s) | 1007 |
| PvuII | CAGCTG | 1 cut(s) | 1619 |
| RsaI | GTAC | 2 cut(s) | 234, 1105 |
| RsaNI | GTAC | 2 cut(s) | 233, 1104 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1422, 1829, 2717 |
| SacI | GAGCTC | 2 cut(s) | 2215, 2333 |
| SatI | GCNGC | 8 cut(s) | 83, 640, 1533, 2085, 2232, 2373, 2376, 2748 |
| Sau96I | GGNCC | 6 cut(s) | 1003, 1376, 1723, 2086, 2639, 2640 |
| SchI | GAGTC | 4 cut(s) | 269, 1130, 1275, 2506 |
| ScrFI | CCNGG | 8 cut(s) | 876, 1055, 1242, 1589, 1854, 1859, 2007, 2429 |
| SduI | GDGCHC | 4 cut(s) | 139, 2215, 2333, 2643 |
| SfaNI | GCATC | 7 cut(s) | 395, 468, 998, 1179, 1222, 1928, 2539 |
| Sfr274I | CTCGAG | 1 cut(s) | 2208 |
| SfuI | TTCGAA | 1 cut(s) | 2630 |
| SinI | GGWCC | 3 cut(s) | 1003, 1376, 1723 |
| SlaI | CTCGAG | 1 cut(s) | 2208 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1422, 1829, 2717 |
| SmlI | CTYRAG | 1 cut(s) | 2208 |
| SmoI | CTYRAG | 1 cut(s) | 2208 |
| SphI | GCATGC | 1 cut(s) | 1919 |
| SsiI | CCGC | 5 cut(s) | 1309, 1822, 2084, 2261, 2829 |
| SspMI | CTAG | 2 cut(s) | 971, 1451 |
| SstI | GAGCTC | 2 cut(s) | 2215, 2333 |
| StyD4I | CCNGG | 8 cut(s) | 874, 1053, 1240, 1587, 1852, 1857, 2005, 2427 |
| TaaI | ACNGT | 3 cut(s) | 622, 2447, 2725 |
| TaiI | ACGT | 4 cut(s) | 160, 823, 1011, 2224 |
| TaqI | TCGA | 5 cut(s) | 310, 2020, 2080, 2209, 2630 |
| TatI | WGTACW | 2 cut(s) | 232, 1103 |
| TauI | GCSGC | 1 cut(s) | 2087 |
| TfiI | GAWTC | 8 cut(s) | 572, 691, 767, 1346, 1905, 1942, 1998, 2015 |
| TscAI | CASTG | 6 cut(s) | 627, 777, 1400, 1534, 1651, 2802 |
| TseFI | GTSAC | 3 cut(s) | 653, 2441, 2719 |
| TseI | GCWGC | 7 cut(s) | 82, 639, 1532, 2231, 2372, 2375, 2747 |
| Tsp45I | GTSAC | 3 cut(s) | 653, 2441, 2719 |
| TspDTI | ATGAA | 9 cut(s) | 47, 573, 615, 1143, 1151, 1184, 1316, 1948, 2534 |
| TspGWI | ACGGA | 3 cut(s) | 43, 1088, 1339 |
| TspRI | CASTG | 6 cut(s) | 627, 777, 1400, 1534, 1651, 2802 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1007 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1694, 2291 |
| VpaK11BI | GGWCC | 3 cut(s) | 1003, 1376, 1723 |
| VspI | ATTAAT | 1 cut(s) | 1368 |
| XapI | RAATTY | 5 cut(s) | 1691, 1931, 2541, 2578, 2816 |
| XceI | RCATGY | 2 cut(s) | 1919, 2158 |
| XhoI | CTCGAG | 1 cut(s) | 2208 |
| XmnI | GAANNNNTTC | 1 cut(s) | 326 |
| XspI | CTAG | 2 cut(s) | 971, 1451 |
| Zsp2I | ATGCAT | 2 cut(s) | 1237, 1921 |