Rmu_co8395109.1_g000001

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8395109.1
OG0002777
Physical Location & Seq
Forward (+)
118 .. 1039
922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8395109.1_g000001.1.cds

Sequence Viewer

Length: 804 bp
atggaacagcatgcatcagggaagaaattccaggagattcttgaagaagcattcattcaccccctacaaattgaaggcgagttatatattggaatccctgcaggcaagtcagcaagtgtggaagctcggcttgcaagccttgcaccctatggagatgatccgaagaagctttcagaggttggcagcagcttggatttgccctccagcctcaagccagacaacattcaacaagctgctaccatggtgcctgctctattcaacatgctcaacatccgccgcgccatcatcccagcagccaatgcacattgctcagcacgtgcaatagcgcgttactatgcatccctagtcgatggtggtgctattccaccacctcattcctcctcctcttcgacaccacctctcggtagccatcctcacattccccactctactgctgctgaaaactcatcatccagtcctaaaatagataagctattcagcaacccaaaaattcatgatgcttttttgggggtgggggaatatgctagtttggttcagcaggatgggatatttggactcgggtttaagaggtgccaccactcgaaggacaggtcacttatcggctttggccactcaggaatgggtggatctactggcttttgtgacatagaaaacaagtttgctattgctgtaactttgaataaaatgtcatatggtgctgagactgcaagaataatacagttggtttgttcagagttgaatatcccagtgccagaggaatattcaggttttgaagacagtgatgcaaaagttttagttaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1 Beta-lactamase WaaY

Protein Analysis

267

Amino Acids

28.45

Weight (kDa)

5.98

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 244, 570
AccII CGCG 2 cut(s) 279, 328
AciI CCGC 2 cut(s) 274, 277
AclWI GGATC 2 cut(s) 152, 634
AcoI YGGCCR 1 cut(s) 607
AcsI RAATTY 2 cut(s) 26, 489
AcvI CACGTG 1 cut(s) 317
AfiI CCNNNNNNNGG 2 cut(s) 401, 583
AgsI TTSAA 7 cut(s) 44, 74, 227, 259, 679, 739, 773
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 5 cut(s) 125, 169, 189, 233, 472
AluI AGCT 5 cut(s) 125, 169, 189, 233, 472
Alw26I GTCTC 1 cut(s) 695
AlwI GGATC 2 cut(s) 152, 634
Ama87I CYCGRG 1 cut(s) 557
AoxI GGCC 1 cut(s) 607
ApeKI GCWGC 5 cut(s) 183, 186, 233, 293, 434
ApoI RAATTY 2 cut(s) 26, 489
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
Asp700I GAANNNNTTC 1 cut(s) 26
AspLEI GCGC 2 cut(s) 281, 328
AsuHPI GGTGA 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 557
BalI TGGCCA 1 cut(s) 609
BanI GGYRCC 2 cut(s) 244, 570
BbrPI CACGTG 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 780
BbvI GCAGC 5 cut(s) 195, 198, 220, 305, 421
BccI CCATC 4 cut(s) 290, 344, 417, 536
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 695
BfaI CTAG 2 cut(s) 344, 525
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 6 cut(s) 184, 187, 234, 277, 294, 435
BlpI GCTNAGC 1 cut(s) 310
BlsI GCNGC 6 cut(s) 185, 188, 235, 278, 295, 436
Bme1390I CCNGG 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 557
BmiI GGNNCC 2 cut(s) 246, 572
BmrFI CCNGG 1 cut(s) 32
BmrI ACTGGG 1 cut(s) 740
BmsI GCATC 4 cut(s) 23, 347, 487, 772
BmuI ACTGGG 1 cut(s) 740
BpiI GAAGAC 1 cut(s) 780
BpmI CTGGAG 1 cut(s) 187
Bpu1102I GCTNAGC 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 583
Bse1I ACTGG 3 cut(s) 453, 637, 746
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 6 cut(s) 270, 285, 338, 409, 449, 547
BseLI CCNNNNNNNGG 2 cut(s) 401, 583
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 3 cut(s) 324, 627, 690
BseNI ACTGG 3 cut(s) 453, 637, 746
BseRI GAGGAG 2 cut(s) 370, 373
BseXI GCAGC 5 cut(s) 195, 198, 220, 305, 421
BseYI CCCAGC 1 cut(s) 289
Bsh1236I CGCG 2 cut(s) 279, 328
BshFI GGCC 1 cut(s) 609
BshNI GGYRCC 2 cut(s) 244, 570
BsiHKCI CYCGRG 1 cut(s) 557
BslI CCNNNNNNNGG 2 cut(s) 401, 583
BsmAI GTCTC 1 cut(s) 695
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 1 cut(s) 609
BsoBI CYCGRG 1 cut(s) 557
Bsp143I GATC 2 cut(s) 157, 626
Bsp1720I GCTNAGC 1 cut(s) 310
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 2 cut(s) 274, 277
BspANI GGCC 1 cut(s) 609
BspCNI CTCAG 3 cut(s) 323, 626, 691
BspFNI CGCG 2 cut(s) 279, 328
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 2 cut(s) 246, 572
BspMAI CTGCAG 1 cut(s) 103
BspPI GGATC 2 cut(s) 152, 634
BspT107I GGYRCC 2 cut(s) 244, 570
BsrDI GCAATG 1 cut(s) 304
BsrI ACTGG 3 cut(s) 453, 637, 746
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 2 cut(s) 157, 626
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 2 cut(s) 720, 779
Bst6I CTCTTC 1 cut(s) 391
BstAPI GCANNNNNTGC 2 cut(s) 140, 299
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 5 cut(s) 12, 103, 132, 136, 249
BstDEI CTNAG 3 cut(s) 310, 613, 699
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 6 cut(s) 270, 285, 338, 409, 449, 547
BstFNI CGCG 2 cut(s) 279, 328
BstHHI GCGC 2 cut(s) 281, 328
BstKTI GATC 2 cut(s) 160, 629
BstMAI GTCTC 1 cut(s) 695
BstMBI GATC 2 cut(s) 157, 626
BstMWI GCNNNNNNNGC 4 cut(s) 131, 140, 299, 704
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 2 cut(s) 14, 265
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 2 cut(s) 279, 328
BstV1I GCAGC 5 cut(s) 195, 198, 220, 305, 421
BstV2I GAAGAC 1 cut(s) 780
BstX2I RGATCY 1 cut(s) 626
BstYI RGATCY 1 cut(s) 626
BsuRI GGCC 1 cut(s) 609
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 6 cut(s) 270, 285, 338, 409, 449, 547
BtsIMutI CAGTG 2 cut(s) 753, 784
Cac8I GCNNGC 5 cut(s) 12, 103, 132, 136, 249
CciI TCATGA 1 cut(s) 493
CfoI GCGC 2 cut(s) 281, 328
CviAII CATG 4 cut(s) 11, 241, 262, 494
DdeI CTNAG 3 cut(s) 310, 613, 699
DpnI GATC 2 cut(s) 159, 628
DpnII GATC 2 cut(s) 157, 626
EaeI YGGCCR 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 391
EarI CTCTTC 1 cut(s) 391
EciI GGCGGA 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 240
Eco72I CACGTG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 557
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 240
EcoT22I ATGCAT 2 cut(s) 16, 340
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 4 cut(s) 14, 244, 265, 497
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FatI CATG 4 cut(s) 10, 240, 261, 493
FauNDI CATATG 1 cut(s) 691
Fnu4HI GCNGC 6 cut(s) 184, 187, 234, 277, 294, 435
FokI GGATG 6 cut(s) 257, 272, 325, 396, 436, 554
Fsp4HI GCNGC 6 cut(s) 184, 187, 234, 277, 294, 435
FspBI CTAG 2 cut(s) 344, 525
GlaI GCGC 2 cut(s) 280, 327
GluI GCNGC 6 cut(s) 184, 187, 234, 277, 294, 435
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 1 cut(s) 187
HaeIII GGCC 1 cut(s) 609
HhaI GCGC 2 cut(s) 281, 328
Hin1II CATG 4 cut(s) 14, 244, 265, 497
Hin6I GCGC 2 cut(s) 279, 326
HinP1I GCGC 2 cut(s) 279, 326
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 3 cut(s) 37, 93, 555
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 3 cut(s) 162, 175, 733
Hpy188III TCNNGA 3 cut(s) 41, 494, 615
HpyAV CCTTC 2 cut(s) 68, 577
HpyCH4III ACNGT 2 cut(s) 720, 779
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 9 cut(s) 14, 101, 134, 143, 302, 320, 338, 707, 785
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 140, 299, 704
HpyF3I CTNAG 3 cut(s) 310, 613, 699
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 4 cut(s) 14, 244, 265, 497
HspAI GCGC 2 cut(s) 279, 326
Kzo9I GATC 2 cut(s) 157, 626
Lsp1109I GCAGC 5 cut(s) 195, 198, 220, 305, 421
LweI GCATC 4 cut(s) 23, 347, 487, 772
MaeI CTAG 2 cut(s) 344, 525
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 4 cut(s) 329, 591, 641, 670
MalI GATC 2 cut(s) 159, 628
MboI GATC 2 cut(s) 157, 626
MboII GAAGA 5 cut(s) 34, 56, 175, 378, 785
MflI RGATCY 1 cut(s) 626
MlsI TGGCCA 1 cut(s) 609
MluCI AATT 4 cut(s) 26, 69, 489, 799
MluNI TGGCCA 1 cut(s) 609
MlyI GAGTC 1 cut(s) 549
Mox20I TGGCCA 1 cut(s) 609
Mph1103I ATGCAT 2 cut(s) 16, 340
MroXI GAANNNNTTC 1 cut(s) 26
MscI TGGCCA 1 cut(s) 609
MseI TTAA 2 cut(s) 564, 798
Msp20I TGGCCA 1 cut(s) 609
MspR9I CCNGG 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 50
MvaI CCWGG 1 cut(s) 32
MvnI CGCG 2 cut(s) 279, 328
MwoI GCNNNNNNNGC 4 cut(s) 131, 140, 299, 704
NcoI CCATGG 1 cut(s) 240
NdeI CATATG 1 cut(s) 691
NdeII GATC 2 cut(s) 157, 626
NlaIII CATG 4 cut(s) 14, 244, 265, 497
NlaIV GGNNCC 2 cut(s) 246, 572
NmeAIII GCCGAG 1 cut(s) 106
NmuCI GTSAC 2 cut(s) 591, 641
NsiI ATGCAT 2 cut(s) 16, 340
NspI RCATGY 2 cut(s) 14, 265
PaeI GCATGC 1 cut(s) 14
PagI TCATGA 1 cut(s) 493
PctI GAATGC 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 37, 93
PfoI TCCNGGA 1 cut(s) 30
PkrI GCNGC 6 cut(s) 185, 188, 235, 278, 295, 436
PleI GAGTC 1 cut(s) 549
PmaCI CACGTG 1 cut(s) 317
PmlI CACGTG 1 cut(s) 317
PpsI GAGTC 1 cut(s) 549
Ppu21I YACGTR 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 30
PspCI CACGTG 1 cut(s) 317
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 246, 572
PstI CTGCAG 1 cut(s) 103
PsuI RGATCY 1 cut(s) 626
SaqAI TTAA 2 cut(s) 564, 798
SatI GCNGC 6 cut(s) 184, 187, 234, 277, 294, 435
Sau3AI GATC 2 cut(s) 157, 626
SbfI CCTGCAGG 1 cut(s) 103
SchI GAGTC 1 cut(s) 549
ScrFI CCNGG 1 cut(s) 32
SdaI CCTGCAGG 1 cut(s) 103
SfaNI GCATC 4 cut(s) 23, 347, 487, 772
SfcI CTRYAG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SphI GCATGC 1 cut(s) 14
Sse8387I CCTGCAGG 1 cut(s) 103
Sse9I AATT 4 cut(s) 26, 69, 489, 799
SsiI CCGC 2 cut(s) 274, 277
SspI AATATT 1 cut(s) 761
SspMI CTAG 2 cut(s) 344, 525
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 720, 779
TaiI ACGT 1 cut(s) 319
TaqI TCGA 3 cut(s) 348, 389, 581
TasI AATT 4 cut(s) 26, 69, 489, 799
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 2 cut(s) 37, 93
Tru1I TTAA 2 cut(s) 564, 798
Tru9I TTAA 2 cut(s) 564, 798
TscAI CASTG 2 cut(s) 753, 784
TseFI GTSAC 2 cut(s) 591, 641
TseI GCWGC 5 cut(s) 183, 186, 233, 293, 434
Tsp45I GTSAC 2 cut(s) 591, 641
TspDTI ATGAA 2 cut(s) 43, 482
TspRI CASTG 2 cut(s) 753, 784
XapI RAATTY 2 cut(s) 26, 489
XceI RCATGY 2 cut(s) 14, 265
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 2 cut(s) 344, 525
Zsp2I ATGCAT 2 cut(s) 16, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.