Rmu_sc0029548.1_g000001

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029548.1
OG0002777
Physical Location & Seq
Reverse (-)
1 .. 867
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029548.1_g000001.1.cds

Sequence Viewer

Length: 537 bp
atggctaatgatcactggatctatgatacacctcccctctctgatgtagaggccaagctcaggccactcctagttcagctgggaaatgacaacaaattacttggagttcaggtatgcgcttacaaagatggaaaggttattattgacactgctggtggattgctcgaaaaagatagtgaccggccggttcagcctgacagcctttttccagttttttcggtaacaaagggaataacagctggaatgttacattggttgattgacgccggaaaattgaagctcgaggatagtgttgcaaatatatggtcagaatttggatcacatggaaaagatctcataaaggtccatcatgcgcttaaccatacatctggactgcacaatgccttggcagacattgtgttaggaaacccttttctcatgtctaactgggaagagtgtttaaaaagcacggccatgtcggtacctgagagtgagcctggcaaggagcagacataccactatatatcttatggctatatctgcggcggaatcattgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1 Beta-lactamase WaaY

Protein Analysis

179

Amino Acids

19.66

Weight (kDa)

5.26

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 460
AccB1I GGYRCC 1 cut(s) 460
AciI CCGC 2 cut(s) 522, 525
AclWI GGATC 2 cut(s) 26, 325
AcoI YGGCCR 2 cut(s) 182, 450
AcsI RAATTY 1 cut(s) 311
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 1 cut(s) 462
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 1 cut(s) 475
AjuI GAANNNNNNNTTGG 2 cut(s) 235, 267
AluBI AGCT 4 cut(s) 58, 79, 239, 280
AluI AGCT 4 cut(s) 58, 79, 239, 280
AlwI GGATC 2 cut(s) 26, 325
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 4 cut(s) 51, 62, 182, 450
ApoI RAATTY 1 cut(s) 311
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
Asp718I GGTACC 1 cut(s) 460
AspLEI GCGC 2 cut(s) 119, 355
AspS9I GGNCC 1 cut(s) 343
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 1 cut(s) 343
BanI GGYRCC 1 cut(s) 460
BccI CCATC 2 cut(s) 122, 354
BceAI ACGGC 1 cut(s) 465
BciT130I CCWGG 1 cut(s) 477
BclI TGATCA 1 cut(s) 10
BfaI CTAG 1 cut(s) 71
BglII AGATCT 1 cut(s) 331
BisI GCNGC 1 cut(s) 523
BlsI GCNGC 1 cut(s) 524
Bme1390I CCNGG 1 cut(s) 477
Bme18I GGWCC 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 1 cut(s) 477
BmrI ACTGGG 1 cut(s) 436
BmuI ACTGGG 1 cut(s) 436
Bpu10I CCTNAGC 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 384
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse118I RCCGGY 2 cut(s) 180, 184
Bse1I ACTGG 3 cut(s) 20, 209, 431
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMII CTCAG 2 cut(s) 73, 456
BseNI ACTGG 3 cut(s) 20, 209, 431
BseX3I CGGCCG 1 cut(s) 182
BseYI CCCAGC 1 cut(s) 79
BsgI GTGCAG 1 cut(s) 359
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 4 cut(s) 53, 64, 184, 452
BshNI GGYRCC 1 cut(s) 460
BsiEI CGRYCG 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 3 cut(s) 181, 185, 267
BslI CCNNNNNNNGG 1 cut(s) 60
BsnI GGCC 4 cut(s) 53, 64, 184, 452
BsoBI CYCGRG 1 cut(s) 281
Bsp143I GATC 4 cut(s) 10, 18, 317, 331
BspACI CCGC 2 cut(s) 522, 525
BspANI GGCC 4 cut(s) 53, 64, 184, 452
BspCNI CTCAG 2 cut(s) 72, 457
BspLI GGNNCC 1 cut(s) 462
BspPI GGATC 2 cut(s) 26, 325
BspT107I GGYRCC 1 cut(s) 460
BsrFI RCCGGY 2 cut(s) 180, 184
BsrI ACTGG 3 cut(s) 20, 209, 431
BssAI RCCGGY 2 cut(s) 180, 184
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 4 cut(s) 10, 18, 317, 331
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 477
Bst6I CTCTTC 1 cut(s) 426
BstACI GRCGYC 1 cut(s) 264
BstDEI CTNAG 2 cut(s) 59, 465
BstHHI GCGC 2 cut(s) 119, 355
BstKTI GATC 4 cut(s) 13, 21, 320, 334
BstMBI GATC 4 cut(s) 10, 18, 317, 331
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 2 cut(s) 190, 519
BstNI CCWGG 1 cut(s) 477
BstSCI CCNGG 1 cut(s) 475
BstX2I RGATCY 2 cut(s) 18, 331
BstXI CCANNNNNNTGG 1 cut(s) 368
BstYI RGATCY 2 cut(s) 18, 331
BstZI CGGCCG 1 cut(s) 182
BsuRI GGCC 4 cut(s) 53, 64, 184, 452
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 13, 147
CfoI GCGC 2 cut(s) 119, 355
Cfr10I RCCGGY 2 cut(s) 180, 184
Cfr13I GGNCC 1 cut(s) 343
CseI GACGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 461
CviAII CATG 4 cut(s) 323, 350, 418, 454
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 2 cut(s) 59, 465
DpnI GATC 4 cut(s) 12, 20, 319, 333
DpnII GATC 4 cut(s) 10, 18, 317, 331
DraI TTTAAA 1 cut(s) 441
EaeI YGGCCR 2 cut(s) 182, 450
EagI CGGCCG 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
EclXI CGGCCG 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 343
Eco52I CGGCCG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 475
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 4 cut(s) 326, 353, 421, 457
FatI CATG 4 cut(s) 322, 349, 417, 453
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 1 cut(s) 523
Fsp4HI GCNGC 1 cut(s) 523
FspBI CTAG 1 cut(s) 71
GlaI GCGC 2 cut(s) 118, 354
GluI GCNGC 1 cut(s) 523
GsaI CCCAGC 1 cut(s) 83
HaeIII GGCC 4 cut(s) 53, 64, 184, 452
HapII CCGG 3 cut(s) 181, 185, 267
HgaI GACGC 1 cut(s) 272
HhaI GCGC 2 cut(s) 119, 355
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 4 cut(s) 326, 353, 421, 457
Hin6I GCGC 2 cut(s) 117, 353
HinP1I GCGC 2 cut(s) 117, 353
HinfI GANTC 1 cut(s) 528
HpaII CCGG 3 cut(s) 181, 185, 267
Hpy188I TCNGA 2 cut(s) 43, 310
Hpy188III TCNNGA 1 cut(s) 369
HpyCH4V TGCA 2 cut(s) 296, 376
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 519
HpyF3I CTNAG 2 cut(s) 59, 465
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 4 cut(s) 326, 353, 421, 457
HspAI GCGC 2 cut(s) 117, 353
KpnI GGTACC 1 cut(s) 464
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 4 cut(s) 10, 18, 317, 331
LmnI GCTCC 1 cut(s) 484
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 3 cut(s) 176, 220, 246
MalI GATC 4 cut(s) 12, 20, 319, 333
MboI GATC 4 cut(s) 10, 18, 317, 331
MboII GAAGA 1 cut(s) 443
MflI RGATCY 2 cut(s) 18, 331
MluCI AATT 3 cut(s) 95, 272, 311
MnlI CCTC 4 cut(s) 42, 43, 47, 277
MseI TTAA 2 cut(s) 357, 440
MslI CAYNNNNRTG 1 cut(s) 452
MspA1I CMGCKG 2 cut(s) 79, 239
MspI CCGG 3 cut(s) 181, 185, 267
MspR9I CCNGG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 2 cut(s) 190, 519
NdeII GATC 4 cut(s) 10, 18, 317, 331
NlaIII CATG 4 cut(s) 326, 353, 421, 457
NlaIV GGNNCC 1 cut(s) 462
NmuCI GTSAC 1 cut(s) 176
PaeR7I CTCGAG 1 cut(s) 281
PfeI GAWTC 1 cut(s) 528
PkrI GCNGC 1 cut(s) 524
Psp6I CCWGG 1 cut(s) 475
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 1 cut(s) 343
PspXI VCTCGAGB 1 cut(s) 281
PsuI RGATCY 2 cut(s) 18, 331
PvuII CAGCTG 2 cut(s) 79, 239
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 2 cut(s) 357, 440
SatI GCNGC 1 cut(s) 523
Sau3AI GATC 4 cut(s) 10, 18, 317, 331
Sau96I GGNCC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 477
SetI ASST 9 cut(s) 34, 60, 81, 114, 138, 241, 282, 345, 466
Sfr274I CTCGAG 1 cut(s) 281
SinI GGWCC 1 cut(s) 343
SlaI CTCGAG 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 3 cut(s) 95, 272, 311
SsiI CCGC 2 cut(s) 522, 525
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 475
StyI CCWWGG 1 cut(s) 384
TaqI TCGA 2 cut(s) 165, 282
TasI AATT 3 cut(s) 95, 272, 311
TauI GCSGC 1 cut(s) 525
TfiI GAWTC 1 cut(s) 528
Tru1I TTAA 2 cut(s) 357, 440
Tru9I TTAA 2 cut(s) 357, 440
TscAI CASTG 2 cut(s) 20, 154
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspRI CASTG 2 cut(s) 20, 154
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 1 cut(s) 311
XhoI CTCGAG 1 cut(s) 281
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.