domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G24810 AT5G24810 |
| fragaria_vesca | FvH4_2g36370 FvH4_2g36370 FvH4_2g36370 FvH4_2g36372 |
| malus_domestica | MD08G1123100.v1.1 MD15G1100800.v1.1 MD15G1102100.v1.1 |
| prunus_persica | Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1 Prupe.1G455100_v2.0.a1 |
| pyrus_communis | pycom08g10200 pycom08g10210 pycom15g09330 |
| rosa_chinensis | RchiOBHm_Chr6g0305511 |
| rosa_laevigata | RLG00000010882 RLG00000010885 |
| rosa_multiflora | Rmu_co8395109.1_g000001 Rmu_sc0001809.1_g000002 Rmu_sc0001809.1_g000004 Rmu_sc0029548.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00162720 Rroxscaffold_7G00162740 |
| rosa_rugosa | Rorug06G0340800.1 Rorug06G0341000 Rorug06G0341100 |
| rosa_samantha | Rh6AG453000 Rh6AG453200 Rh6BG448600 Rh6BG448800 Rh6CG466700 Rh6CG467000 Rh6DG453400 Rh6DG453600 |
| rosa_wichuraiana | Rw6G039470 Rw6G039490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1222 |
| Acc36I | ACCTGC | 1 cut(s) | 1222 |
| AccB1I | GGYRCC | 3 cut(s) | 1942, 2546, 2599 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1427 |
| AccI | GTMKAC | 1 cut(s) | 1851 |
| AciI | CCGC | 3 cut(s) | 1111, 1842, 1881 |
| AclWI | GGATC | 7 cut(s) | 960, 1208, 1352, 1438, 1452, 2219, 2485 |
| AcoI | YGGCCR | 3 cut(s) | 1418, 1591, 2385 |
| AcsI | RAATTY | 6 cut(s) | 682, 1278, 1424, 1667, 2120, 2380 |
| AcuI | CTGAAG | 2 cut(s) | 32, 1880 |
| AcvI | CACGTG | 1 cut(s) | 623 |
| AfaI | GTAC | 2 cut(s) | 907, 1575 |
| AflII | CTTAAG | 1 cut(s) | 845 |
| AflIII | ACRYGT | 1 cut(s) | 620 |
| AhlI | ACTAGT | 1 cut(s) | 2219 |
| AjnI | CCWGG | 5 cut(s) | 676, 1042, 1588, 1593, 1741 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 770, 802 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 106, 138 |
| AluBI | AGCT | 9 cut(s) | 407, 756, 944, 1240, 1261, 1337, 1994, 2093, 2174 |
| AluI | AGCT | 9 cut(s) | 407, 756, 944, 1240, 1261, 1337, 1994, 2093, 2174 |
| Alw21I | GWGCWC | 1 cut(s) | 2020 |
| Alw26I | GTCTC | 6 cut(s) | 930, 1129, 1574, 1873, 2546, 2621 |
| AlwI | GGATC | 7 cut(s) | 960, 1208, 1352, 1438, 1452, 2219, 2485 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1577 |
| Ama87I | CYCGRG | 1 cut(s) | 2464 |
| AoxI | GGCC | 4 cut(s) | 1418, 1591, 2211, 2385 |
| ApeKI | GCWGC | 7 cut(s) | 441, 1334, 1977, 1991, 2036, 2174, 2177 |
| ApoI | RAATTY | 6 cut(s) | 682, 1278, 1424, 1667, 2120, 2380 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2426, 2458 |
| AseI | ATTAAT | 2 cut(s) | 1170, 1509 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 504, 782 |
| AspLEI | GCGC | 1 cut(s) | 855 |
| AspS9I | GGNCC | 5 cut(s) | 805, 1178, 1456, 2212, 2442 |
| AsuC2I | CCSGG | 3 cut(s) | 2292, 2340, 2597 |
| AsuHPI | GGTGA | 2 cut(s) | 677, 1058 |
| AvaI | CYCGRG | 1 cut(s) | 2464 |
| AvaII | GGWCC | 4 cut(s) | 805, 1178, 1456, 2442 |
| AxyI | CCTNAGG | 1 cut(s) | 2637 |
| BaeGI | GKGCMC | 1 cut(s) | 2463 |
| BalI | TGGCCA | 3 cut(s) | 1420, 1593, 2387 |
| BanI | GGYRCC | 3 cut(s) | 1942, 2546, 2599 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1680, 1712 |
| BauI | CACGAG | 1 cut(s) | 1065 |
| BbrPI | CACGTG | 1 cut(s) | 623 |
| BbsI | GAAGAC | 1 cut(s) | 2665 |
| Bbv12I | GWGCWC | 1 cut(s) | 2020 |
| BbvCI | CCTCAGC | 3 cut(s) | 333, 798, 1241 |
| BbvI | GCAGC | 7 cut(s) | 428, 1346, 1989, 2003, 2048, 2161, 2164 |
| BccI | CCATC | 9 cut(s) | 213, 218, 539, 644, 1304, 1467, 2042, 2390, 2432 |
| BciT130I | CCWGG | 5 cut(s) | 678, 1044, 1590, 1595, 1743 |
| BclI | TGATCA | 1 cut(s) | 1192 |
| BcnI | CCSGG | 3 cut(s) | 2292, 2340, 2597 |
| BcoDI | GTCTC | 6 cut(s) | 930, 1129, 1574, 1873, 2546, 2621 |
| BcuI | ACTAGT | 1 cut(s) | 2219 |
| BfaI | CTAG | 5 cut(s) | 857, 1124, 1346, 1811, 2220 |
| BfmI | CTRYAG | 3 cut(s) | 442, 1332, 1989 |
| BfrI | CTTAAG | 1 cut(s) | 845 |
| BfuAI | ACCTGC | 1 cut(s) | 1222 |
| BglII | AGATCT | 1 cut(s) | 1891 |
| BisI | GCNGC | 7 cut(s) | 442, 1335, 1978, 1992, 2037, 2175, 2178 |
| BlpI | GCTNAGC | 1 cut(s) | 2008 |
| BlsI | GCNGC | 7 cut(s) | 443, 1336, 1979, 1993, 2038, 2176, 2179 |
| Bme1390I | CCNGG | 8 cut(s) | 678, 1044, 1590, 1595, 1743, 2292, 2340, 2597 |
| Bme18I | GGWCC | 4 cut(s) | 805, 1178, 1456, 2442 |
| BmeT110I | CYCGRG | 1 cut(s) | 2464 |
| BmgT120I | GGNCC | 5 cut(s) | 805, 1178, 1456, 2212, 2442 |
| BmrFI | CCNGG | 8 cut(s) | 678, 1044, 1590, 1595, 1743, 2292, 2340, 2597 |
| BmrI | ACTGGG | 3 cut(s) | 1361, 1549, 2238 |
| BmsI | GCATC | 6 cut(s) | 166, 981, 1024, 1664, 1989, 2341 |
| BmuI | ACTGGG | 3 cut(s) | 1361, 1549, 2238 |
| BpiI | GAAGAC | 1 cut(s) | 2665 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 109, 141 |
| BpmI | CTGGAG | 2 cut(s) | 1359, 1725 |
| Bpu10I | CCTNAGC | 3 cut(s) | 333, 798, 1241 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2008 |
| BpuEI | CTTGAG | 4 cut(s) | 16, 1277, 1415, 2289 |
| BpuMI | CCSGG | 3 cut(s) | 2292, 2340, 2597 |
| BsaAI | YACGTR | 1 cut(s) | 623 |
| BsaI | GGTCTC | 3 cut(s) | 1129, 1873, 2621 |
| BsaJI | CCNNGG | 3 cut(s) | 1497, 2290, 2338 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1278, 1308, 1589, 1619 |
| Bse1I | ACTGG | 7 cut(s) | 317, 1367, 1544, 1833, 2244, 2488, 2560 |
| Bse21I | CCTNAGG | 1 cut(s) | 2637 |
| Bse3DI | GCAATG | 2 cut(s) | 882, 2002 |
| BseBI | CCWGG | 5 cut(s) | 678, 1044, 1590, 1595, 1743 |
| BseDI | CCNNGG | 3 cut(s) | 1497, 2290, 2338 |
| BseGI | GGATG | 9 cut(s) | 490, 550, 673, 712, 2071, 2138, 2443, 2565, 2592 |
| BseMI | GCAATG | 2 cut(s) | 882, 2002 |
| BseMII | CTCAG | 9 cut(s) | 140, 347, 399, 789, 1232, 1569, 1884, 2022, 2628 |
| BseNI | ACTGG | 7 cut(s) | 317, 1367, 1544, 1833, 2244, 2488, 2560 |
| BseRI | GAGGAG | 3 cut(s) | 1559, 1794, 1938 |
| BseSI | GKGCMC | 1 cut(s) | 2463 |
| BseXI | GCAGC | 7 cut(s) | 428, 1346, 1989, 2003, 2048, 2161, 2164 |
| BseYI | CCCAGC | 1 cut(s) | 1261 |
| BsgI | GTGCAG | 1 cut(s) | 160 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1885 |
| BshFI | GGCC | 4 cut(s) | 1420, 1593, 2213, 2387 |
| BshNI | GGYRCC | 3 cut(s) | 1942, 2546, 2599 |
| BsiEI | CGRYCG | 1 cut(s) | 1885 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2020 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2464 |
| BsiSI | CCGG | 3 cut(s) | 2292, 2340, 2597 |
| BslFI | GGGAC | 7 cut(s) | 127, 818, 855, 1191, 1928, 2428, 2655 |
| BsmAI | GTCTC | 6 cut(s) | 930, 1129, 1574, 1873, 2546, 2621 |
| BsmFI | GGGAC | 7 cut(s) | 127, 818, 855, 1191, 1928, 2428, 2655 |
| BsmI | GAATGC | 2 cut(s) | 549, 1691 |
| BsnI | GGCC | 4 cut(s) | 1420, 1593, 2213, 2387 |
| Bso31I | GGTCTC | 3 cut(s) | 1129, 1873, 2621 |
| BsoBI | CYCGRG | 1 cut(s) | 2464 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2020, 2463 |
| Bsp143I | GATC | 9 cut(s) | 952, 1192, 1200, 1357, 1430, 1444, 1891, 2224, 2477 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2008 |
| BspACI | CCGC | 3 cut(s) | 1111, 1842, 1881 |
| BspANI | GGCC | 4 cut(s) | 1420, 1593, 2213, 2387 |
| BspCNI | CTCAG | 9 cut(s) | 139, 346, 400, 790, 1233, 1570, 1883, 2021, 2629 |
| BspHI | TCATGA | 2 cut(s) | 400, 1131 |
| BspMAI | CTGCAG | 3 cut(s) | 446, 1336, 1993 |
| BspMI | ACCTGC | 1 cut(s) | 1222 |
| BspPI | GGATC | 7 cut(s) | 960, 1208, 1352, 1438, 1452, 2219, 2485 |
| BspT107I | GGYRCC | 3 cut(s) | 1942, 2546, 2599 |
| BspTI | CTTAAG | 1 cut(s) | 845 |
| BspTNI | GGTCTC | 3 cut(s) | 1129, 1873, 2621 |
| BsrDI | GCAATG | 2 cut(s) | 882, 2002 |
| BsrI | ACTGG | 7 cut(s) | 317, 1367, 1544, 1833, 2244, 2488, 2560 |
| BssECI | CCNNGG | 3 cut(s) | 1497, 2290, 2338 |
| BssMI | GATC | 9 cut(s) | 952, 1192, 1200, 1357, 1430, 1444, 1891, 2224, 2477 |
| BssSI | CACGAG | 1 cut(s) | 1065 |
| BssT1I | CCWWGG | 1 cut(s) | 1497 |
| Bst2BI | CACGAG | 1 cut(s) | 1065 |
| Bst2UI | CCWGG | 5 cut(s) | 678, 1044, 1590, 1595, 1743 |
| Bst4CI | ACNGT | 4 cut(s) | 424, 892, 2264, 2646 |
| Bst6I | CTCTTC | 4 cut(s) | 32, 56, 1812, 2083 |
| BstAFI | CTTAAG | 1 cut(s) | 845 |
| BstBAI | YACGTR | 1 cut(s) | 623 |
| BstC8I | GCNNGC | 4 cut(s) | 873, 1653, 2211, 2368 |
| BstEII | GGTNACC | 1 cut(s) | 665 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1809, 2307, 2636 |
| BstF5I | GGATG | 9 cut(s) | 490, 550, 673, 712, 2071, 2138, 2443, 2565, 2592 |
| BstHHI | GCGC | 1 cut(s) | 855 |
| BstKTI | GATC | 9 cut(s) | 955, 1195, 1203, 1360, 1433, 1447, 1894, 2227, 2480 |
| BstMAI | GTCTC | 6 cut(s) | 930, 1129, 1574, 1873, 2546, 2621 |
| BstMBI | GATC | 9 cut(s) | 952, 1192, 1200, 1357, 1430, 1444, 1891, 2224, 2477 |
| BstMCI | CGRYCG | 1 cut(s) | 1885 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 226, 2384 |
| BstNI | CCWGG | 5 cut(s) | 678, 1044, 1590, 1595, 1743 |
| BstNSI | RCATGY | 3 cut(s) | 1655, 1963, 2116 |
| BstPI | GGTNACC | 1 cut(s) | 665 |
| BstSCI | CCNGG | 8 cut(s) | 676, 1042, 1588, 1593, 1741, 2290, 2338, 2595 |
| BstSFI | CTRYAG | 3 cut(s) | 442, 1332, 1989 |
| BstSLI | GKGCMC | 1 cut(s) | 2463 |
| BstV1I | GCAGC | 7 cut(s) | 428, 1346, 1989, 2003, 2048, 2161, 2164 |
| BstV2I | GAAGAC | 1 cut(s) | 2665 |
| BstX2I | RGATCY | 3 cut(s) | 1200, 1444, 1891 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 481, 1481 |
| BstYI | RGATCY | 3 cut(s) | 1200, 1444, 1891 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2637 |
| BsuRI | GGCC | 4 cut(s) | 1420, 1593, 2213, 2387 |
| BtsCI | GGATG | 9 cut(s) | 490, 550, 673, 712, 2071, 2138, 2443, 2565, 2592 |
| BtsI | GCAGTG | 1 cut(s) | 1329 |
| BtsIMutI | CAGTG | 3 cut(s) | 429, 1202, 1329 |
| BveI | ACCTGC | 1 cut(s) | 1222 |
| Cac8I | GCNNGC | 4 cut(s) | 873, 1653, 2211, 2368 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1577 |
| CciI | TCATGA | 2 cut(s) | 400, 1131 |
| CfoI | GCGC | 1 cut(s) | 855 |
| Cfr13I | GGNCC | 5 cut(s) | 805, 1178, 1456, 2212, 2442 |
| Csp6I | GTAC | 2 cut(s) | 906, 1574 |
| CviQI | GTAC | 2 cut(s) | 906, 1574 |
| DpnI | GATC | 9 cut(s) | 954, 1194, 1202, 1359, 1432, 1446, 1893, 2226, 2479 |
| DpnII | GATC | 9 cut(s) | 952, 1192, 1200, 1357, 1430, 1444, 1891, 2224, 2477 |
| DraI | TTTAAA | 2 cut(s) | 558, 1554 |
| EaeI | YGGCCR | 3 cut(s) | 1418, 1591, 2385 |
| Eam1104I | CTCTTC | 4 cut(s) | 32, 56, 1812, 2083 |
| EarI | CTCTTC | 4 cut(s) | 32, 56, 1812, 2083 |
| Eco130I | CCWWGG | 1 cut(s) | 1497 |
| Eco31I | GGTCTC | 3 cut(s) | 1129, 1873, 2621 |
| Eco32I | GATATC | 1 cut(s) | 1129 |
| Eco47I | GGWCC | 4 cut(s) | 805, 1178, 1456, 2442 |
| Eco57I | CTGAAG | 2 cut(s) | 32, 1880 |
| Eco72I | CACGTG | 1 cut(s) | 623 |
| Eco81I | CCTNAGG | 1 cut(s) | 2637 |
| Eco88I | CYCGRG | 1 cut(s) | 2464 |
| Eco91I | GGTNACC | 1 cut(s) | 665 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1809, 2307, 2636 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2212, 2442 |
| EcoO65I | GGTNACC | 1 cut(s) | 665 |
| EcoRII | CCWGG | 5 cut(s) | 676, 1042, 1588, 1593, 1741 |
| EcoRV | GATATC | 1 cut(s) | 1129 |
| EcoT14I | CCWWGG | 1 cut(s) | 1497 |
| EcoT22I | ATGCAT | 2 cut(s) | 1039, 1657 |
| ErhI | CCWWGG | 1 cut(s) | 1497 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 770, 802 |
| FaqI | GGGAC | 7 cut(s) | 127, 818, 855, 1191, 1928, 2428, 2655 |
| FauNDI | CATATG | 1 cut(s) | 628 |
| FbaI | TGATCA | 1 cut(s) | 1192 |
| FblI | GTMKAC | 1 cut(s) | 1851 |
| Fnu4HI | GCNGC | 7 cut(s) | 442, 1335, 1978, 1992, 2037, 2175, 2178 |
| FokI | GGATG | 9 cut(s) | 497, 557, 660, 699, 2058, 2125, 2450, 2552, 2579 |
| Fsp4HI | GCNGC | 7 cut(s) | 442, 1335, 1978, 1992, 2037, 2175, 2178 |
| FspBI | CTAG | 5 cut(s) | 857, 1124, 1346, 1811, 2220 |
| GlaI | GCGC | 1 cut(s) | 854 |
| GluI | GCNGC | 7 cut(s) | 442, 1335, 1978, 1992, 2037, 2175, 2178 |
| GsaI | CCCAGC | 1 cut(s) | 1265 |
| GsuI | CTGGAG | 2 cut(s) | 1359, 1725 |
| HaeIII | GGCC | 4 cut(s) | 1420, 1593, 2213, 2387 |
| HapII | CCGG | 3 cut(s) | 2292, 2340, 2597 |
| HhaI | GCGC | 1 cut(s) | 855 |
| Hin6I | GCGC | 1 cut(s) | 853 |
| HinP1I | GCGC | 1 cut(s) | 853 |
| HincII | GTYRAC | 3 cut(s) | 310, 513, 592 |
| HindII | GTYRAC | 3 cut(s) | 310, 513, 592 |
| HpaII | CCGG | 3 cut(s) | 2292, 2340, 2597 |
| HphI | GGTGA | 2 cut(s) | 677, 1058 |
| Hpy166II | GTNNAC | 4 cut(s) | 310, 513, 592, 1852 |
| Hpy188I | TCNGA | 7 cut(s) | 129, 381, 535, 1225, 1537, 1860, 2584 |
| Hpy8I | GTNNAC | 4 cut(s) | 310, 513, 592, 1852 |
| Hpy99I | CGWCG | 1 cut(s) | 1977 |
| HpyAV | CCTTC | 6 cut(s) | 967, 1709, 1858, 1908, 2303, 2428 |
| HpyCH4III | ACNGT | 4 cut(s) | 424, 892, 2264, 2646 |
| HpyCH4IV | ACGT | 3 cut(s) | 622, 1107, 2026 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 226, 2384 |
| HpySE526I | ACGT | 3 cut(s) | 622, 1107, 2026 |
| HspAI | GCGC | 1 cut(s) | 853 |
| KflI | GGGWCCC | 1 cut(s) | 2442 |
| Ksp22I | TGATCA | 1 cut(s) | 1192 |
| Kzo9I | GATC | 9 cut(s) | 952, 1192, 1200, 1357, 1430, 1444, 1891, 2224, 2477 |
| LmnI | GCTCC | 2 cut(s) | 1597, 1807 |
| Lsp1109I | GCAGC | 7 cut(s) | 428, 1346, 1989, 2003, 2048, 2161, 2164 |
| LweI | GCATC | 6 cut(s) | 166, 981, 1024, 1664, 1989, 2341 |
| MaeI | CTAG | 5 cut(s) | 857, 1124, 1346, 1811, 2220 |
| MaeII | ACGT | 3 cut(s) | 622, 1107, 2026 |
| MaeIII | GTNAC | 5 cut(s) | 665, 2153, 2267, 2492, 2521 |
| MalI | GATC | 9 cut(s) | 954, 1194, 1202, 1359, 1432, 1446, 1893, 2226, 2479 |
| MboI | GATC | 9 cut(s) | 952, 1192, 1200, 1357, 1430, 1444, 1891, 2224, 2477 |
| MfeI | CAATTG | 1 cut(s) | 303 |
| MflI | RGATCY | 3 cut(s) | 1200, 1444, 1891 |
| MhlI | GDGCHC | 2 cut(s) | 2020, 2463 |
| MlsI | TGGCCA | 3 cut(s) | 1420, 1593, 2387 |
| MluNI | TGGCCA | 3 cut(s) | 1420, 1593, 2387 |
| MlyI | GAGTC | 4 cut(s) | 40, 932, 1077, 1242 |
| MmeI | TCCRAC | 1 cut(s) | 2628 |
| Mox20I | TGGCCA | 3 cut(s) | 1420, 1593, 2387 |
| Mph1103I | ATGCAT | 2 cut(s) | 1039, 1657 |
| MroXI | GAANNNNTTC | 2 cut(s) | 504, 782 |
| MscI | TGGCCA | 3 cut(s) | 1420, 1593, 2387 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1565, 1789, 2597 |
| Msp20I | TGGCCA | 3 cut(s) | 1420, 1593, 2387 |
| MspA1I | CMGCKG | 2 cut(s) | 1337, 1844 |
| MspCI | CTTAAG | 1 cut(s) | 845 |
| MspI | CCGG | 3 cut(s) | 2292, 2340, 2597 |
| MspR9I | CCNGG | 8 cut(s) | 678, 1044, 1590, 1595, 1743, 2292, 2340, 2597 |
| MunI | CAATTG | 1 cut(s) | 303 |
| Mva1269I | GAATGC | 2 cut(s) | 549, 1691 |
| MvaI | CCWGG | 5 cut(s) | 678, 1044, 1590, 1595, 1743 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 226, 2384 |
| NciI | CCSGG | 3 cut(s) | 2292, 2340, 2597 |
| NdeI | CATATG | 1 cut(s) | 628 |
| NdeII | GATC | 9 cut(s) | 952, 1192, 1200, 1357, 1430, 1444, 1891, 2224, 2477 |
| NmeAIII | GCCGAG | 1 cut(s) | 2575 |
| NmuCI | GTSAC | 3 cut(s) | 665, 2267, 2492 |
| NsiI | ATGCAT | 2 cut(s) | 1039, 1657 |
| NspI | RCATGY | 3 cut(s) | 1655, 1963, 2116 |
| PaeI | GCATGC | 1 cut(s) | 1655 |
| PagI | TCATGA | 2 cut(s) | 400, 1131 |
| PaqCI | CACCTGC | 1 cut(s) | 1222 |
| PctI | GAATGC | 2 cut(s) | 549, 1691 |
| PdmI | GAANNNNTTC | 2 cut(s) | 504, 782 |
| PfeI | GAWTC | 9 cut(s) | 569, 1148, 1641, 1678, 1734, 1820, 2132, 2343, 2651 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1427 |
| PfoI | TCCNGGA | 1 cut(s) | 676 |
| PkrI | GCNGC | 7 cut(s) | 443, 1336, 1979, 1993, 2038, 2176, 2179 |
| PleI | GAGTC | 4 cut(s) | 40, 931, 1076, 1242 |
| PmaCI | CACGTG | 1 cut(s) | 623 |
| PmlI | CACGTG | 1 cut(s) | 623 |
| PpsI | GAGTC | 4 cut(s) | 40, 931, 1076, 1242 |
| Ppu21I | YACGTR | 1 cut(s) | 623 |
| PpuMI | RGGWCCY | 1 cut(s) | 2442 |
| PshBI | ATTAAT | 2 cut(s) | 1170, 1509 |
| Psp5II | RGGWCCY | 1 cut(s) | 2442 |
| Psp6I | CCWGG | 5 cut(s) | 676, 1042, 1588, 1593, 1741 |
| PspCI | CACGTG | 1 cut(s) | 623 |
| PspEI | GGTNACC | 1 cut(s) | 665 |
| PspFI | CCCAGC | 1 cut(s) | 1261 |
| PspGI | CCWGG | 5 cut(s) | 676, 1042, 1588, 1593, 1741 |
| PspPI | GGNCC | 5 cut(s) | 805, 1178, 1456, 2212, 2442 |
| PspPPI | RGGWCCY | 1 cut(s) | 2442 |
| PstI | CTGCAG | 3 cut(s) | 446, 1336, 1993 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1577 |
| PsuI | RGATCY | 3 cut(s) | 1200, 1444, 1891 |
| PvuII | CAGCTG | 1 cut(s) | 1337 |
| RsaI | GTAC | 2 cut(s) | 907, 1575 |
| RsaNI | GTAC | 2 cut(s) | 906, 1574 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1565, 1789, 2597 |
| SatI | GCNGC | 7 cut(s) | 442, 1335, 1978, 1992, 2037, 2175, 2178 |
| Sau3AI | GATC | 9 cut(s) | 952, 1192, 1200, 1357, 1430, 1444, 1891, 2224, 2477 |
| Sau96I | GGNCC | 5 cut(s) | 805, 1178, 1456, 2212, 2442 |
| SchI | GAGTC | 4 cut(s) | 40, 932, 1077, 1242 |
| ScrFI | CCNGG | 8 cut(s) | 678, 1044, 1590, 1595, 1743, 2292, 2340, 2597 |
| SduI | GDGCHC | 2 cut(s) | 2020, 2463 |
| SfaNI | GCATC | 6 cut(s) | 166, 981, 1024, 1664, 1989, 2341 |
| SfcI | CTRYAG | 3 cut(s) | 442, 1332, 1989 |
| SinI | GGWCC | 4 cut(s) | 805, 1178, 1456, 2442 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1565, 1789, 2597 |
| SmlI | CTYRAG | 5 cut(s) | 31, 845, 1256, 1394, 2304 |
| SmoI | CTYRAG | 5 cut(s) | 31, 845, 1256, 1394, 2304 |
| SpeI | ACTAGT | 1 cut(s) | 2219 |
| SphI | GCATGC | 1 cut(s) | 1655 |
| SsiI | CCGC | 3 cut(s) | 1111, 1842, 1881 |
| SspMI | CTAG | 5 cut(s) | 857, 1124, 1346, 1811, 2220 |
| StyD4I | CCNGG | 8 cut(s) | 676, 1042, 1588, 1593, 1741, 2290, 2338, 2595 |
| StyI | CCWWGG | 1 cut(s) | 1497 |
| TaaI | ACNGT | 4 cut(s) | 424, 892, 2264, 2646 |
| TaiI | ACGT | 3 cut(s) | 625, 1110, 2029 |
| TaqI | TCGA | 6 cut(s) | 81, 208, 390, 418, 1825, 2432 |
| TatI | WGTACW | 1 cut(s) | 905 |
| TfiI | GAWTC | 9 cut(s) | 569, 1148, 1641, 1678, 1734, 1820, 2132, 2343, 2651 |
| TscAI | CASTG | 3 cut(s) | 429, 1202, 1336 |
| TseFI | GTSAC | 3 cut(s) | 665, 2267, 2492 |
| TseI | GCWGC | 7 cut(s) | 441, 1334, 1977, 1991, 2036, 2174, 2177 |
| Tsp45I | GTSAC | 3 cut(s) | 665, 2267, 2492 |
| TspDTI | ATGAA | 8 cut(s) | 375, 399, 417, 953, 986, 1118, 1684, 2347 |
| TspGWI | ACGGA | 3 cut(s) | 890, 1141, 2013 |
| TspRI | CASTG | 3 cut(s) | 429, 1202, 1336 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1427 |
| Vha464I | CTTAAG | 1 cut(s) | 845 |
| VpaK11BI | GGWCC | 4 cut(s) | 805, 1178, 1456, 2442 |
| VspI | ATTAAT | 2 cut(s) | 1170, 1509 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1809, 2307, 2636 |
| XapI | RAATTY | 6 cut(s) | 682, 1278, 1424, 1667, 2120, 2380 |
| XbaI | TCTAGA | 1 cut(s) | 1123 |
| XceI | RCATGY | 3 cut(s) | 1655, 1963, 2116 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2435 |
| XmiI | GTMKAC | 1 cut(s) | 1851 |
| XmnI | GAANNNNTTC | 2 cut(s) | 504, 782 |
| XspI | CTAG | 5 cut(s) | 857, 1124, 1346, 1811, 2220 |
| Zsp2I | ATGCAT | 2 cut(s) | 1039, 1657 |