Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008126

Physical Location & Seq

Genomic Coordinates Reverse (-)

27161788 .. 27163796

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37241.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGGTATAGACGCTAAAAGGAAATCAGGGTATATTAATTCCATGTTGAACGACGATTTACTTGCCCAAATCCTTAACAAGGTCGACCAGGAAGAAGGTAGAAAATCATTCTCCGAGGTGTGCAAGCAATGGTTAACAGTTGAGCGTCTAAGCCGAACATCACTTCGGGTTTGCCGACCCATGTTCCCATTGGAGCTACTGACTAAGTTCCCAAACTTGGTCGATTTCAGAACAACACGGGAGCTTACCAAAAAAAGAAAAAGGCGAAATAAACAAGCATGGTTTTATCCACCGACTGACACCCGACTCGAATTCATTGCCAAAACATGTCCCAAACTCGAGACCTACATGGCGAGCTTTTATGAAACTAGACATGTCCAAAGTGATGGTCATTTGGGGACGGAAGGTCTACGAGCTTTGGCCATTGGGTGTCCTAAATTGTCCAGACTTATGTTTCAGGGTAGCAAGGTTGTAGGGAATGCTGGAGTTGATGCGCTTTTTCAATCAGCACATAACTTGAAGTCTTTGCATTTGGATGTTAACTCTCTCATCTCTGATCATGCATTTAGAGCAATTGGGTCGTCTTCCATAAGCACGTTGGAGTTAACATACTGTCCGAATGTTACTGATGTCGGATTGGGATTCCTGGCAAATGGATCTATCTCTAGAACCCTCAGGAAATTGGTCCTTGAGCGTTGCCGTGGAATCACTGATACTGGGATCCAGCTTTTGGTCAACTTGCGTAGCTTAGAGCACCTCGAATTGACCGGCTTCAACCAAGTGACTGATATTGGAGGTGTGGCAATCTCAACAATTCAAACCCTCAGGGAATTGAAATTGAGTGCCATTTGGAAGTTGTCAGACCGTACATTTTTTGCTCTTGCTGAGAATTGCCGCAACTTGGAAGTACTTGTTTTGCATCATACAGGGTTGAATGCACCTGTAACCAGAGCTAGCATTCATCCATTTTCAAGACATAAATGCTTGAAATACCTTGCATTGCATGGTTTCAGCAACTTAGATAAGTCTGATCTGGAAATAGTGCTTGGATGCCCCTCATTGGAGTCTCTGGTGTTAGACAAGTCGTTAATTGGTACTTTCGGATTGATGCATGGGAACAGCGTTGGAAGAGTGGTCAAATTTGAATCCATTCATAATCCCCTTCTCCATTTCATCCCCACTGTGTGGGCTACTCTAGCCTTGCAAAATGCAGTTGTCTATGAATACATTAGTACAAGTAGCAAAGCAAGGAGTCCTAGAACCAGTGATTATTCCAAGGCACATAAGATGTCTAATGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

435

Amino Acids

48.64

Weight (kDa)

9.43

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	16 - 53	2.1e-06	F-box
DUF7885	PF25372	136 - 269	1.1e-10	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008126)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37241 FvH4_3g00150 FvH4_3g11250 FvH4_3g11250 FvH4_3g11250 FvH4_3g11280 FvH4_3g44530 FvH4_5g09361 FvH4_5g12191 FvH4_5g12240 FvH4_7g07300 FvH4_7g18342 FvH4_7g29850 FvH4_7g29850
rosa_chinensis	RchiOBHm_Chr7g0185371
rosa_laevigata	RLG00000004918
rosa_multiflora	Rmu_sc0001761.1_g000014 Rmu_sc0008496.1_g000001
rosa_rugosa	Rorug06G0468500 Rorug06G0468600
rosa_samantha	Rh7AG074300 Rh7BG073100 Rh7DG073500
rosa_wichuraiana	Rw7G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	730, 1185
AccI	GTMKAC	2 cut(s)	84, 409
AciI	CCGC	1 cut(s)	895
AclWI	GGATC	3 cut(s)	664, 715, 728
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	3 cut(s)	311, 1139, 1298
AdeI	CACNNNGTG	1 cut(s)	1185
AfaI	GTAC	4 cut(s)	868, 909, 1096, 1234
AfiI	CCNNNNNNNGG	6 cut(s)	79, 217, 730, 901, 1060, 1185
AflIII	ACRYGT	2 cut(s)	326, 373
AhdI	GACNNNNNGTC	1 cut(s)	405
AjnI	CCWGG	2 cut(s)	87, 645
AjuI	GAANNNNNNNTTGG	2 cut(s)	1029, 1061
AluBI	AGCT	7 cut(s)	196, 244, 357, 416, 727, 747, 953
AluI	AGCT	7 cut(s)	196, 244, 357, 416, 727, 747, 953
Alw21I	GWGCWC	1 cut(s)	756
Alw26I	GTCTC	2 cut(s)	335, 1071
AlwI	GGATC	3 cut(s)	664, 715, 728
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	420
ApoI	RAATTY	3 cut(s)	311, 1139, 1298
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
AseI	ATTAAT	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	1149
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	1 cut(s)	685
AsuNHI	GCTAGC	1 cut(s)	953
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	685
AxyI	CCTNAGG	2 cut(s)	674, 824
BalI	TGGCCA	1 cut(s)	422
BamHI	GGATCC	1 cut(s)	720
BbsI	GAAGAC	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	756
BccI	CCATC	1 cut(s)	380
BceAI	ACGGC	1 cut(s)	684
BcgI	CGANNNNNNTGC	6 cut(s)	44, 78, 299, 333, 561, 595
BciT130I	CCWGG	2 cut(s)	89, 647
BclI	TGATCA	1 cut(s)	556
BcoDI	GTCTC	2 cut(s)	335, 1071
BfaI	CTAG	5 cut(s)	369, 666, 954, 1196, 1257
BisI	GCNGC	1 cut(s)	895
BlsI	GCNGC	1 cut(s)	896
BmcAI	AGTACT	1 cut(s)	909
Bme1390I	CCNGG	2 cut(s)	89, 647
Bme18I	GGWCC	1 cut(s)	685
BmeRI	GACNNNNNGTC	1 cut(s)	405
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	685
BmiI	GGNNCC	1 cut(s)	722
BmrFI	CCNGG	2 cut(s)	89, 647
BmrI	ACTGGG	1 cut(s)	726
BmsI	GCATC	4 cut(s)	481, 928, 1040, 1098
BmtI	GCTAGC	1 cut(s)	957
BmuI	ACTGGG	1 cut(s)	726
BpiI	GAAGAC	1 cut(s)	576
BpmI	CTGGAG	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	710
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	3 cut(s)	114, 700, 1275
Bsc4I	CCNNNNNNNGG	6 cut(s)	79, 217, 730, 901, 1060, 1185
Bse118I	RCCGGY	1 cut(s)	767
Bse1I	ACTGG	2 cut(s)	721, 1263
Bse21I	CCTNAGG	2 cut(s)	674, 824
Bse3DI	GCAATG	3 cut(s)	134, 315, 998
BseBI	CCWGG	2 cut(s)	89, 647
BseDI	CCNNGG	3 cut(s)	114, 700, 1275
BseGI	GGATG	4 cut(s)	541, 961, 1055, 1173
BseLI	CCNNNNNNNGG	6 cut(s)	79, 217, 730, 901, 1060, 1185
BseMI	GCAATG	3 cut(s)	134, 315, 998
BseMII	CTCAG	3 cut(s)	688, 838, 876
BseNI	ACTGG	2 cut(s)	721, 1263
BshFI	GGCC	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	756
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	768
BslFI	GGGAC	2 cut(s)	315, 412
BslI	CCNNNNNNNGG	6 cut(s)	79, 217, 730, 901, 1060, 1185
BsmAI	GTCTC	2 cut(s)	335, 1071
BsmFI	GGGAC	2 cut(s)	315, 412
BsmI	GAATGC	3 cut(s)	484, 940, 957
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	756
Bsp143I	GATC	4 cut(s)	556, 656, 720, 1030
BspACI	CCGC	1 cut(s)	895
BspANI	GGCC	1 cut(s)	422
BspCNI	CTCAG	3 cut(s)	687, 837, 877
BspLI	GGNNCC	1 cut(s)	722
BspOI	GCTAGC	1 cut(s)	957
BspPI	GGATC	3 cut(s)	664, 715, 728
BspTNI	GGTCTC	1 cut(s)	335
BsrDI	GCAATG	3 cut(s)	134, 315, 998
BsrFI	RCCGGY	1 cut(s)	767
BsrI	ACTGG	2 cut(s)	721, 1263
BssAI	RCCGGY	1 cut(s)	767
BssECI	CCNNGG	3 cut(s)	114, 700, 1275
BssMI	GATC	4 cut(s)	556, 656, 720, 1030
BssT1I	CCWWGG	1 cut(s)	1275
Bst2UI	CCWGG	2 cut(s)	89, 647
Bst4CI	ACNGT	4 cut(s)	139, 614, 866, 1183
Bst6I	CTCTTC	1 cut(s)	1123
BstC8I	GCNNGC	3 cut(s)	125, 355, 955
BstDEI	CTNAG	7 cut(s)	149, 204, 674, 748, 824, 885, 1018
BstDSI	CCRYGG	1 cut(s)	700
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstF5I	GGATG	4 cut(s)	541, 961, 1055, 1173
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	4 cut(s)	559, 659, 723, 1033
BstMAI	GTCTC	2 cut(s)	335, 1071
BstMBI	GATC	4 cut(s)	556, 656, 720, 1030
BstMWI	GCNNNNNNNGC	2 cut(s)	569, 1196
BstNI	CCWGG	2 cut(s)	89, 647
BstNSI	RCATGY	2 cut(s)	330, 377
BstSCI	CCNGG	2 cut(s)	87, 645
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	2 cut(s)	656, 720
BstXI	CCANNNNNNTGG	1 cut(s)	386
BstYI	RGATCY	2 cut(s)	656, 720
Bsu36I	CCTNAGG	2 cut(s)	674, 824
BsuRI	GGCC	1 cut(s)	422
BtgI	CCRYGG	1 cut(s)	700
BtsCI	GGATG	4 cut(s)	541, 961, 1055, 1173
BtsIMutI	CAGTG	3 cut(s)	708, 1179, 1270
Cac8I	GCNNGC	3 cut(s)	125, 355, 955
CfoI	GCGC	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	767
Cfr13I	GGNCC	1 cut(s)	685
CseI	GACGC	2 cut(s)	20, 134
Csp6I	GTAC	4 cut(s)	867, 908, 1095, 1233
CviAII	CATG	9 cut(s)	43, 181, 279, 327, 349, 374, 560, 1004, 1112
CviQI	GTAC	4 cut(s)	867, 908, 1095, 1233
DdeI	CTNAG	7 cut(s)	149, 204, 674, 748, 824, 885, 1018
DpnI	GATC	4 cut(s)	558, 658, 722, 1032
DpnII	GATC	4 cut(s)	556, 656, 720, 1030
DraIII	CACNNNGTG	1 cut(s)	1185
DriI	GACNNNNNGTC	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	1123
Eam1105I	GACNNNNNGTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	1123
Eco130I	CCWWGG	1 cut(s)	1275
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	685
Eco81I	CCTNAGG	2 cut(s)	674, 824
Eco88I	CYCGRG	1 cut(s)	338
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	2 cut(s)	87, 645
EcoT14I	CCWWGG	1 cut(s)	1275
EcoT22I	ATGCAT	2 cut(s)	565, 1113
ErhI	CCWWGG	1 cut(s)	1275
FaeI	CATG	9 cut(s)	46, 184, 282, 330, 352, 377, 563, 1007, 1115
FaqI	GGGAC	2 cut(s)	315, 412
FatI	CATG	9 cut(s)	42, 180, 278, 326, 348, 373, 559, 1003, 1111
FbaI	TGATCA	1 cut(s)	556
FblI	GTMKAC	2 cut(s)	84, 409
Fnu4HI	GCNGC	1 cut(s)	895
FokI	GGATG	4 cut(s)	548, 948, 1062, 1160
Fsp4HI	GCNGC	1 cut(s)	895
FspBI	CTAG	5 cut(s)	369, 666, 954, 1196, 1257
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	1 cut(s)	895
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	1 cut(s)	768
HgaI	GACGC	2 cut(s)	20, 134
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	9 cut(s)	46, 184, 282, 330, 352, 377, 563, 1007, 1115
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	5 cut(s)	85, 135, 541, 606, 736
HindII	GTYRAC	5 cut(s)	85, 135, 541, 606, 736
HinfI	GANTC	6 cut(s)	306, 642, 705, 1064, 1145, 1252
HpaI	GTTAAC	3 cut(s)	135, 541, 606
HpaII	CCGG	1 cut(s)	768
Hpy166II	GTNNAC	6 cut(s)	85, 135, 410, 541, 606, 736
Hpy188I	TCNGA	8 cut(s)	115, 230, 556, 618, 635, 862, 1030, 1103
Hpy188III	TCNNGA	6 cut(s)	340, 444, 666, 676, 972, 1034
Hpy8I	GTNNAC	6 cut(s)	85, 135, 410, 541, 606, 736
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	89, 398, 1172
HpyCH4III	ACNGT	4 cut(s)	139, 614, 866, 1183
HpyCH4IV	ACGT	1 cut(s)	596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	569, 1196
HpyF3I	CTNAG	7 cut(s)	149, 204, 674, 748, 824, 885, 1018
HpySE526I	ACGT	1 cut(s)	596
Hsp92II	CATG	9 cut(s)	46, 184, 282, 330, 352, 377, 563, 1007, 1115
HspAI	GCGC	1 cut(s)	494
Ksp22I	TGATCA	1 cut(s)	556
KspAI	GTTAAC	3 cut(s)	135, 541, 606
Kzo9I	GATC	4 cut(s)	556, 656, 720, 1030
LmnI	GCTCC	2 cut(s)	193, 241
LweI	GCATC	4 cut(s)	481, 928, 1040, 1098
MaeI	CTAG	5 cut(s)	369, 666, 954, 1196, 1257
MaeII	ACGT	1 cut(s)	596
MaeIII	GTNAC	3 cut(s)	622, 781, 943
MalI	GATC	4 cut(s)	558, 658, 722, 1032
MboI	GATC	4 cut(s)	556, 656, 720, 1030
MboII	GAAGA	3 cut(s)	104, 576, 1140
MfeI	CAATTG	1 cut(s)	573
MflI	RGATCY	2 cut(s)	656, 720
MhlI	GDGCHC	1 cut(s)	756
MlsI	TGGCCA	1 cut(s)	422
MluNI	TGGCCA	1 cut(s)	422
MlyI	GAGTC	3 cut(s)	300, 1073, 1261
MmeI	TCCRAC	3 cut(s)	579, 613, 1105
MnlI	CCTC	6 cut(s)	109, 683, 767, 788, 833, 1066
Mox20I	TGGCCA	1 cut(s)	422
Mph1103I	ATGCAT	2 cut(s)	565, 1113
MroXI	GAANNNNTTC	1 cut(s)	1149
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	6 cut(s)	36, 75, 134, 540, 605, 1088
MslI	CAYNNNNRTG	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	422
MspI	CCGG	1 cut(s)	768
MspR9I	CCNGG	2 cut(s)	89, 647
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	3 cut(s)	484, 940, 957
MvaI	CCWGG	2 cut(s)	89, 647
MwoI	GCNNNNNNNGC	2 cut(s)	569, 1196
NdeII	GATC	4 cut(s)	556, 656, 720, 1030
NheI	GCTAGC	1 cut(s)	953
NlaIII	CATG	9 cut(s)	46, 184, 282, 330, 352, 377, 563, 1007, 1115
NlaIV	GGNNCC	1 cut(s)	722
NmuCI	GTSAC	1 cut(s)	781
NsiI	ATGCAT	2 cut(s)	565, 1113
NspI	RCATGY	2 cut(s)	330, 377
PaeR7I	CTCGAG	1 cut(s)	338
PciI	ACATGT	2 cut(s)	326, 373
PcsI	WCGNNNNNNNCGW	1 cut(s)	172
PctI	GAATGC	3 cut(s)	484, 940, 957
PdmI	GAANNNNTTC	1 cut(s)	1149
PfeI	GAWTC	3 cut(s)	642, 705, 1145
PflMI	CCANNNNNTGG	2 cut(s)	730, 1185
PkrI	GCNGC	1 cut(s)	896
PleI	GAGTC	3 cut(s)	300, 1072, 1260
PpsI	GAGTC	3 cut(s)	300, 1072, 1260
PscI	ACATGT	2 cut(s)	326, 373
PshBI	ATTAAT	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	87, 645
PspGI	CCWGG	2 cut(s)	87, 645
PspN4I	GGNNCC	1 cut(s)	722
PspPI	GGNCC	1 cut(s)	685
PsuI	RGATCY	2 cut(s)	656, 720
RsaI	GTAC	4 cut(s)	868, 909, 1096, 1234
RsaNI	GTAC	4 cut(s)	867, 908, 1095, 1233
RseI	CAYNNNNRTG	1 cut(s)	534
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	6 cut(s)	36, 75, 134, 540, 605, 1088
SatI	GCNGC	1 cut(s)	895
Sau3AI	GATC	4 cut(s)	556, 656, 720, 1030
Sau96I	GGNCC	1 cut(s)	685
ScaI	AGTACT	1 cut(s)	909
SchI	GAGTC	3 cut(s)	300, 1073, 1261
ScrFI	CCNGG	2 cut(s)	89, 647
SduI	GDGCHC	1 cut(s)	756
SfaNI	GCATC	4 cut(s)	481, 928, 1040, 1098
Sfr274I	CTCGAG	1 cut(s)	338
SinI	GGWCC	1 cut(s)	685
SlaI	CTCGAG	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	2 cut(s)	338, 689
SmoI	CTYRAG	2 cut(s)	338, 689
SsiI	CCGC	1 cut(s)	895
SspMI	CTAG	5 cut(s)	369, 666, 954, 1196, 1257
StyD4I	CCNGG	2 cut(s)	87, 645
StyI	CCWWGG	1 cut(s)	1275
TaaI	ACNGT	4 cut(s)	139, 614, 866, 1183
TaiI	ACGT	1 cut(s)	599
TaqI	TCGA	5 cut(s)	84, 222, 309, 339, 759
TatI	WGTACW	2 cut(s)	907, 1232
TauI	GCSGC	1 cut(s)	897
TfiI	GAWTC	3 cut(s)	642, 705, 1145
Tru1I	TTAA	6 cut(s)	36, 75, 134, 540, 605, 1088
Tru9I	TTAA	6 cut(s)	36, 75, 134, 540, 605, 1088
TscAI	CASTG	3 cut(s)	715, 1186, 1270
TseFI	GTSAC	1 cut(s)	781
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	6 cut(s)	304, 378, 950, 1142, 1162, 1236
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	3 cut(s)	715, 1186, 1270
Van91I	CCANNNNNTGG	2 cut(s)	730, 1185
VpaK11BI	GGWCC	1 cut(s)	685
VspI	ATTAAT	1 cut(s)	36
XagI	CCTNNNNNAGG	1 cut(s)	77
XapI	RAATTY	3 cut(s)	311, 1139, 1298
XbaI	TCTAGA	1 cut(s)	665
XceI	RCATGY	2 cut(s)	330, 377
XcmI	CCANNNNNNNNNTGG	2 cut(s)	187, 595
XhoI	CTCGAG	1 cut(s)	338
XmiI	GTMKAC	2 cut(s)	84, 409
XmnI	GAANNNNTTC	1 cut(s)	1149
XspI	CTAG	5 cut(s)	369, 666, 954, 1196, 1257
ZrmI	AGTACT	1 cut(s)	909
Zsp2I	ATGCAT	2 cut(s)	565, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.