FvH4_3g00150

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008126
Physical Location & Seq
Forward (+)
89334 .. 91030
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00150.t1

Sequence Viewer

Length: 1032 bp
ATGTTCCCATTTCGGGTACCCATGTTCCCATTGGATCTACTGACTAAGTTCCCAAACTTGGTCGATTTCAGAACAACACGGGAGCTTACCAAAAAAAGAAAAAGGCGAAATAAACAAGCATGGTTTTATCCACCGACTGACACCCGACTCGAATTCATTGCCAAAACATGTCCCAGACTCGAGACCTACATGGCGAGCTTTTATGAAACTAGACATGTCCAAAGTGATGGTCATTTGGGGACGAAAGGTCTACGAGCTTTGGCAATTGGGTGTCCTAAATTGTCCAGACTTATGTTTCGGGGTAGCAAGGTTGTAGGGAATGCTGGAGTTGATGCGCTTTGTCAATCAGCACATAACTTGAAGTCTTTGCATTTGGCGGACAATCGTCTCATCTCTGATCATGCATTTAGAGCAATTGGGTCGTCTTCCATAAGCACGTTGGAGTTAACATGCTGTCCGAATGTTACTGATGTCGGATTGGGATTCCTGGCAAATGGATCTACCTCTAAAACCCTCAGGAAATTGATTCTTCAGTATTGCCGTGGAATCACCGATACTGGGATCCAGCATTTGGTCAACTTGCGTAGCTTAGAGCACCTCGAATTGGCCGGCCTCAGCCCTGATGTGACTGATATCGGAGGTGTGGCAATCTCGACAATTCAAACCCTCAGGGAATTGAAATTGAGTAACATTTGTAAGTTGTCAGACCGTACAGTTGTTGCTCTTGCTGAGAATTGCTGCAACTTGGAAGTACTTGTTTTGCATCGATTAGGTTTAGGGGTGATTGAACCTGTACCCGGAGATGGAATTCATGCATTTTCAAGACATAAATGCTTGAAATACCTTGCATTGTATCATTTAGATGAGTCTGATGTGGAAATAGTTCTTGGATGCCCCTCATTGGAGTCTCTGGTGTTAGACAAGTCGTTAATTGGTACTTTCGGATTGATGCATGGGAACAGCGCTGGAAGAGTGGTCAAATTTGAATCCTTTGATAAACCCCTTCTCCATTTCATCCCCACAGTGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

344

Amino Acids

38.02

Weight (kDa)

9.02

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 83 - 217 9.9e-13 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 16
AccB7I CCANNNNNTGG 2 cut(s) 571, 1026
AccI GTMKAC 1 cut(s) 250
AciI CCGC 1 cut(s) 377
AclWI GGATC 4 cut(s) 42, 505, 556, 569
AcoI YGGCCR 1 cut(s) 606
AcsI RAATTY 3 cut(s) 152, 807, 980
AcuI CTGAAG 1 cut(s) 515
AdeI CACNNNGTG 1 cut(s) 1026
AfaI GTAC 5 cut(s) 18, 712, 753, 795, 937
AfeI AGCGCT 1 cut(s) 964
AfiI CCNNNNNNNGG 9 cut(s) 13, 58, 558, 571, 604, 797, 803, 901, 1026
AflIII ACRYGT 2 cut(s) 167, 214
AgsI TTSAA 7 cut(s) 361, 662, 679, 788, 822, 838, 986
AhdI GACNNNNNGTC 1 cut(s) 246
AjnI CCWGG 1 cut(s) 486
AjuI GAANNNNNNNTTGG 2 cut(s) 870, 902
AluBI AGCT 4 cut(s) 85, 198, 257, 588
AluI AGCT 4 cut(s) 85, 198, 257, 588
Alw21I GWGCWC 1 cut(s) 597
Alw26I GTCTC 3 cut(s) 176, 392, 912
AlwI GGATC 4 cut(s) 42, 505, 556, 569
Ama87I CYCGRG 1 cut(s) 179
Aor51HI AGCGCT 1 cut(s) 964
AoxI GGCC 2 cut(s) 606, 610
ApeKI GCWGC 1 cut(s) 738
ApoI RAATTY 3 cut(s) 152, 807, 980
ArsI GACNNNNNNTTYG 4 cut(s) 214, 246, 279, 311
Asp700I GAANNNNTTC 1 cut(s) 882
Asp718I GGTACC 1 cut(s) 16
AspLEI GCGC 2 cut(s) 337, 965
AsuC2I CCSGG 1 cut(s) 798
AsuHPI GGTGA 2 cut(s) 541, 793
AvaI CYCGRG 1 cut(s) 179
AxyI CCTNAGG 2 cut(s) 515, 668
BaeI ACNNNNGTAYC 2 cut(s) 8, 41
BamHI GGATCC 1 cut(s) 561
BanI GGYRCC 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 597
BbvCI CCTCAGC 1 cut(s) 614
BbvI GCAGC 1 cut(s) 725
BccI CCATC 2 cut(s) 221, 797
BceAI ACGGC 1 cut(s) 525
BcgI CGANNNNNNTGC 4 cut(s) 140, 174, 402, 436
BciT130I CCWGG 1 cut(s) 488
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 798
BcoDI GTCTC 3 cut(s) 176, 392, 912
BfaI CTAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 966
BisI GCNGC 1 cut(s) 739
BlsI GCNGC 1 cut(s) 740
BmcAI AGTACT 1 cut(s) 753
Bme1390I CCNGG 2 cut(s) 488, 798
BmeRI GACNNNNNGTC 1 cut(s) 246
BmeT110I CYCGRG 1 cut(s) 179
BmiI GGNNCC 2 cut(s) 18, 563
BmrFI CCNGG 2 cut(s) 488, 798
BmrI ACTGGG 1 cut(s) 567
BmsI GCATC 4 cut(s) 322, 772, 881, 939
BmuI ACTGGG 1 cut(s) 567
BoxI GACNNNNGTC 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 345
Bpu10I CCTNAGC 1 cut(s) 614
BpuMI CCSGG 1 cut(s) 798
Bsa29I ATCGAT 1 cut(s) 766
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 541
BsaXI ACNNNNNCTCC 2 cut(s) 990, 1020
Bsc4I CCNNNNNNNGG 9 cut(s) 13, 58, 558, 571, 604, 797, 803, 901, 1026
Bse118I RCCGGY 1 cut(s) 608
Bse1I ACTGG 1 cut(s) 562
Bse21I CCTNAGG 2 cut(s) 515, 668
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 488
BseCI ATCGAT 1 cut(s) 766
BseDI CCNNGG 1 cut(s) 541
BseGI GGATG 2 cut(s) 896, 1014
BseLI CCNNNNNNNGG 9 cut(s) 13, 58, 558, 571, 604, 797, 803, 901, 1026
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 4 cut(s) 529, 628, 682, 720
BseNI ACTGG 1 cut(s) 562
BseXI GCAGC 1 cut(s) 725
BshFI GGCC 2 cut(s) 608, 612
BshNI GGYRCC 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 766
BsiHKAI GWGCWC 1 cut(s) 597
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 2 cut(s) 609, 798
BslFI GGGAC 2 cut(s) 156, 253
BslI CCNNNNNNNGG 9 cut(s) 13, 58, 558, 571, 604, 797, 803, 901, 1026
BsmAI GTCTC 3 cut(s) 176, 392, 912
BsmBI CGTCTC 1 cut(s) 392
BsmFI GGGAC 2 cut(s) 156, 253
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 2 cut(s) 608, 612
Bso31I GGTCTC 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 597
Bsp143I GATC 4 cut(s) 34, 397, 497, 561
BspACI CCGC 1 cut(s) 377
BspANI GGCC 2 cut(s) 608, 612
BspCNI CTCAG 4 cut(s) 528, 627, 681, 721
BspDI ATCGAT 1 cut(s) 766
BspLI GGNNCC 2 cut(s) 18, 563
BspPI GGATC 4 cut(s) 42, 505, 556, 569
BspT107I GGYRCC 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 608
BsrI ACTGG 1 cut(s) 562
BssAI RCCGGY 1 cut(s) 608
BssECI CCNNGG 1 cut(s) 541
BssMI GATC 4 cut(s) 34, 397, 497, 561
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 3 cut(s) 710, 715, 1024
Bst6I CTCTTC 1 cut(s) 964
BstC8I GCNNGC 2 cut(s) 196, 610
BstDEI CTNAG 6 cut(s) 45, 515, 589, 614, 668, 729
BstDSI CCRYGG 1 cut(s) 541
BstF5I GGATG 2 cut(s) 896, 1014
BstH2I RGCGCY 1 cut(s) 966
BstHHI GCGC 2 cut(s) 337, 965
BstKTI GATC 4 cut(s) 37, 400, 500, 564
BstMAI GTCTC 3 cut(s) 176, 392, 912
BstMBI GATC 4 cut(s) 34, 397, 497, 561
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 1 cut(s) 488
BstNSI RCATGY 3 cut(s) 171, 218, 453
BstPAI GACNNNNGTC 1 cut(s) 384
BstSCI CCNGG 2 cut(s) 486, 796
BstV1I GCAGC 1 cut(s) 725
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 3 cut(s) 34, 497, 561
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 3 cut(s) 34, 497, 561
Bsu15I ATCGAT 1 cut(s) 766
Bsu36I CCTNAGG 2 cut(s) 515, 668
BsuRI GGCC 2 cut(s) 608, 612
BsuTUI ATCGAT 1 cut(s) 766
BtgI CCRYGG 1 cut(s) 541
BtsCI GGATG 2 cut(s) 896, 1014
BtsIMutI CAGTG 1 cut(s) 1029
Cac8I GCNNGC 2 cut(s) 196, 610
CfoI GCGC 2 cut(s) 337, 965
Cfr10I RCCGGY 1 cut(s) 608
ClaI ATCGAT 1 cut(s) 766
Csp6I GTAC 5 cut(s) 17, 711, 752, 794, 936
CviAII CATG 9 cut(s) 22, 120, 168, 190, 215, 401, 450, 812, 953
CviJI RGCY 7 cut(s) 85, 198, 257, 588, 608, 612, 618
CviKI_1 RGCY 7 cut(s) 85, 198, 257, 588, 608, 612, 618
CviQI GTAC 5 cut(s) 17, 711, 752, 794, 936
DdeI CTNAG 6 cut(s) 45, 515, 589, 614, 668, 729
DpnI GATC 4 cut(s) 36, 399, 499, 563
DpnII GATC 4 cut(s) 34, 397, 497, 561
DraIII CACNNNGTG 1 cut(s) 1026
DriI GACNNNNNGTC 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 606
Eam1104I CTCTTC 1 cut(s) 964
Eam1105I GACNNNNNGTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 964
EciI GGCGGA 1 cut(s) 392
Eco31I GGTCTC 1 cut(s) 176
Eco32I GATATC 1 cut(s) 634
Eco47III AGCGCT 1 cut(s) 964
Eco57I CTGAAG 1 cut(s) 515
Eco81I CCTNAGG 2 cut(s) 515, 668
Eco88I CYCGRG 1 cut(s) 179
EcoRI GAATTC 2 cut(s) 152, 807
EcoRII CCWGG 1 cut(s) 486
EcoRV GATATC 1 cut(s) 634
EcoT22I ATGCAT 3 cut(s) 406, 817, 954
Esp3I CGTCTC 1 cut(s) 392
FaeI CATG 9 cut(s) 25, 123, 171, 193, 218, 404, 453, 815, 956
FaqI GGGAC 2 cut(s) 156, 253
FatI CATG 9 cut(s) 21, 119, 167, 189, 214, 400, 449, 811, 952
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 1 cut(s) 250
Fnu4HI GCNGC 1 cut(s) 739
FokI GGATG 2 cut(s) 903, 1001
FseI GGCCGGCC 1 cut(s) 612
Fsp4HI GCNGC 1 cut(s) 739
FspBI CTAG 1 cut(s) 210
GlaI GCGC 2 cut(s) 336, 964
GluI GCNGC 1 cut(s) 739
GsuI CTGGAG 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 966
HaeIII GGCC 2 cut(s) 608, 612
HapII CCGG 2 cut(s) 609, 798
HhaI GCGC 2 cut(s) 337, 965
Hin1II CATG 9 cut(s) 25, 123, 171, 193, 218, 404, 453, 815, 956
Hin6I GCGC 2 cut(s) 335, 963
HinP1I GCGC 2 cut(s) 335, 963
HincII GTYRAC 2 cut(s) 447, 577
HindII GTYRAC 2 cut(s) 447, 577
HinfI GANTC 8 cut(s) 147, 177, 483, 526, 546, 866, 905, 986
HpaI GTTAAC 1 cut(s) 447
HpaII CCGG 2 cut(s) 609, 798
HphI GGTGA 2 cut(s) 541, 793
Hpy166II GTNNAC 3 cut(s) 251, 447, 577
Hpy188I TCNGA 8 cut(s) 71, 397, 459, 476, 638, 706, 871, 944
Hpy188III TCNNGA 5 cut(s) 181, 285, 517, 652, 822
Hpy8I GTNNAC 3 cut(s) 251, 447, 577
HpyAV CCTTC 1 cut(s) 1013
HpyCH4III ACNGT 3 cut(s) 710, 715, 1024
HpyCH4IV ACGT 1 cut(s) 437
HpyCH4V TGCA 7 cut(s) 370, 404, 741, 763, 815, 848, 952
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 6 cut(s) 45, 515, 589, 614, 668, 729
HpySE526I ACGT 1 cut(s) 437
Hsp92II CATG 9 cut(s) 25, 123, 171, 193, 218, 404, 453, 815, 956
HspAI GCGC 2 cut(s) 335, 963
KpnI GGTACC 1 cut(s) 20
KroI GCCGGC 1 cut(s) 608
KroNI GCCGGC 1 cut(s) 610
Ksp22I TGATCA 1 cut(s) 397
KspAI GTTAAC 1 cut(s) 447
Kzo9I GATC 4 cut(s) 34, 397, 497, 561
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 1 cut(s) 725
LweI GCATC 4 cut(s) 322, 772, 881, 939
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 437
MaeIII GTNAC 3 cut(s) 463, 625, 686
MalI GATC 4 cut(s) 36, 399, 499, 563
MboI GATC 4 cut(s) 34, 397, 497, 561
MboII GAAGA 3 cut(s) 417, 521, 981
MfeI CAATTG 2 cut(s) 264, 414
MflI RGATCY 3 cut(s) 34, 497, 561
MhlI GDGCHC 1 cut(s) 597
MlyI GAGTC 4 cut(s) 141, 171, 875, 914
MmeI TCCRAC 2 cut(s) 420, 454
MnlI CCTC 7 cut(s) 514, 524, 608, 623, 632, 677, 907
Mph1103I ATGCAT 3 cut(s) 406, 817, 954
MroNI GCCGGC 1 cut(s) 608
MroXI GAANNNNTTC 1 cut(s) 882
MseI TTAA 2 cut(s) 446, 929
MslI CAYNNNNRTG 1 cut(s) 861
MspI CCGG 2 cut(s) 609, 798
MspR9I CCNGG 2 cut(s) 488, 798
MunI CAATTG 2 cut(s) 264, 414
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 1 cut(s) 488
MwoI GCNNNNNNNGC 1 cut(s) 410
NaeI GCCGGC 1 cut(s) 610
NciI CCSGG 1 cut(s) 798
NdeII GATC 4 cut(s) 34, 397, 497, 561
NgoMIV GCCGGC 1 cut(s) 608
NlaIII CATG 9 cut(s) 25, 123, 171, 193, 218, 404, 453, 815, 956
NlaIV GGNNCC 2 cut(s) 18, 563
NmuCI GTSAC 1 cut(s) 625
NsiI ATGCAT 3 cut(s) 406, 817, 954
NspI RCATGY 3 cut(s) 171, 218, 453
PaeR7I CTCGAG 1 cut(s) 179
PciI ACATGT 2 cut(s) 167, 214
PctI GAATGC 1 cut(s) 325
PdiI GCCGGC 1 cut(s) 610
PdmI GAANNNNTTC 1 cut(s) 882
PfeI GAWTC 4 cut(s) 483, 526, 546, 986
PflMI CCANNNNNTGG 2 cut(s) 571, 1026
PkrI GCNGC 1 cut(s) 740
PleI GAGTC 4 cut(s) 141, 171, 874, 913
PpsI GAGTC 4 cut(s) 141, 171, 874, 913
PscI ACATGT 2 cut(s) 167, 214
PshAI GACNNNNGTC 1 cut(s) 384
Psp6I CCWGG 1 cut(s) 486
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 2 cut(s) 18, 563
PsuI RGATCY 3 cut(s) 34, 497, 561
RigI GGCCGGCC 1 cut(s) 612
RsaI GTAC 5 cut(s) 18, 712, 753, 795, 937
RsaNI GTAC 5 cut(s) 17, 711, 752, 794, 936
RseI CAYNNNNRTG 1 cut(s) 861
SaqAI TTAA 2 cut(s) 446, 929
SatI GCNGC 1 cut(s) 739
Sau3AI GATC 4 cut(s) 34, 397, 497, 561
ScaI AGTACT 1 cut(s) 753
SchI GAGTC 4 cut(s) 141, 171, 875, 914
ScrFI CCNGG 2 cut(s) 488, 798
SduI GDGCHC 1 cut(s) 597
SfaNI GCATC 4 cut(s) 322, 772, 881, 939
Sfr274I CTCGAG 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 861
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SsiI CCGC 1 cut(s) 377
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 2 cut(s) 486, 796
TaaI ACNGT 3 cut(s) 710, 715, 1024
TaiI ACGT 1 cut(s) 440
TaqI TCGA 6 cut(s) 63, 150, 180, 600, 653, 766
TatI WGTACW 1 cut(s) 751
TfiI GAWTC 4 cut(s) 483, 526, 546, 986
Tru1I TTAA 2 cut(s) 446, 929
Tru9I TTAA 2 cut(s) 446, 929
TscAI CASTG 1 cut(s) 1029
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 1 cut(s) 738
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 4 cut(s) 145, 219, 800, 1003
TspRI CASTG 1 cut(s) 1029
Van91I CCANNNNNTGG 2 cut(s) 571, 1026
XapI RAATTY 3 cut(s) 152, 807, 980
XceI RCATGY 3 cut(s) 171, 218, 453
XcmI CCANNNNNNNNNTGG 2 cut(s) 28, 436
XhoI CTCGAG 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 882
XspI CTAG 1 cut(s) 210
ZrmI AGTACT 1 cut(s) 753
Zsp2I ATGCAT 3 cut(s) 406, 817, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.