Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001761.1

Orthogroup ID

OG0008126

Physical Location & Seq

Genomic Coordinates Forward (+)

60533 .. 61612

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001761.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atgctgaacgacgatttgcttttcctaatccttaacaaaatcaagaacaaacgagatagaattgcgtacaaacgagatagagaatcgttctcgctggtctgcaagcagtggttaagagtggaacgtctgaaccgaacatcactttgggttcgccaatccgtacccccgggtctaatgactagattcccaaacttagttgatttcagaacacgtgagcttaccaagcgaaagaaaaagagaaataaaagagcatggaagtatcagcagaccgatacccacctcgaggtcatagccaaaacctgtcacgaactcgagaccttcatggtaagctgtgagaagcatgatctacaaaatgatggtcatttggggccaaaaggtctacaagcattgggaaatgggtgtcccaaattatccagacttatgttttgtgggagcaaggtggtagggaatgctggagttgatgcgctttttcactcggcacataacttgaagtctttgtatctgagttttaatgatctaatatctgacccagcacttagagcaattggatcatcttccattagcgccttggaattggtattttgtgataaaattactgatgtaggattagggtttttggcaaatggttctacctcaaaaaccatcaagaaattggtccttgtggggtgccctcttatcactgatattggaggtgtggcaatttctgcaattcaaaccctcaaggtattgagattgaatgatgtggacgtgtcagaccataccatggtcgctcttgccaagaattgcagcaaaatagaaatacttgatttagagtattgtgaaagggtaaccgaagctggcattcgtgcattttcaagtcataagtgcttgaagctccttgcattgtttggtttaagcggcttagatcaatctgatatggaatgcatagcgcttggatgcccgtcattggagtctgttgttacagacaacttgttaactaggggttttgaattgatgcaagagaacactagaagagtggttaaattcaaaagctcctataatcttcctcttccccgtttcagcaccacctcgtggtattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

359

Amino Acids

40.3

Weight (kDa)

9.26

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008126)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37241 FvH4_3g00150 FvH4_3g11250 FvH4_3g11250 FvH4_3g11250 FvH4_3g11280 FvH4_3g44530 FvH4_5g09361 FvH4_5g12191 FvH4_5g12240 FvH4_7g07300 FvH4_7g18342 FvH4_7g29850 FvH4_7g29850
rosa_chinensis	RchiOBHm_Chr7g0185371
rosa_laevigata	RLG00000004918
rosa_multiflora	Rmu_sc0001761.1_g000014 Rmu_sc0008496.1_g000001
rosa_rugosa	Rorug06G0468500 Rorug06G0468600
rosa_samantha	Rh7AG074300 Rh7BG073100 Rh7DG073500
rosa_wichuraiana	Rw7G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	666
AccB7I	CCANNNNNTGG	2 cut(s)	763, 1071
AccI	GTMKAC	1 cut(s)	379
AciI	CCGC	1 cut(s)	897
AclWI	GGATC	1 cut(s)	556
AcsI	RAATTY	1 cut(s)	1022
AcvI	CACGTG	1 cut(s)	212
AdeI	CACNNNGTG	1 cut(s)	1071
AfaI	GTAC	2 cut(s)	68, 162
AfeI	AGCGCT	1 cut(s)	930
AfiI	CCNNNNNNNGG	4 cut(s)	283, 763, 946, 1071
AflIII	ACRYGT	2 cut(s)	209, 747
AgsI	TTSAA	7 cut(s)	490, 713, 736, 855, 871, 989, 1027
AjiI	CACGTC	1 cut(s)	748
AjuI	GAANNNNNNNTTGG	2 cut(s)	127, 159
AluBI	AGCT	5 cut(s)	217, 330, 836, 874, 1032
AluI	AGCT	5 cut(s)	217, 330, 836, 874, 1032
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	556
Ama87I	CYCGRG	3 cut(s)	166, 281, 311
Aor51HI	AGCGCT	1 cut(s)	930
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	786
ApoI	RAATTY	1 cut(s)	1022
ArsI	GACNNNNNNTTYG	4 cut(s)	343, 375, 408, 440
AspLEI	GCGC	3 cut(s)	466, 566, 931
AspS9I	GGNCC	2 cut(s)	368, 655
AsuC2I	CCSGG	2 cut(s)	167, 168
AvaI	CYCGRG	3 cut(s)	166, 281, 311
AvaII	GGWCC	1 cut(s)	655
BaeGI	GKGCMC	1 cut(s)	671
BanI	GGYRCC	1 cut(s)	666
BauI	CACGAG	1 cut(s)	1069
BbrPI	CACGTG	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	798
BccI	CCATC	2 cut(s)	350, 650
BcnI	CCSGG	2 cut(s)	167, 168
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	3 cut(s)	180, 978, 1008
BfoI	RGCGCY	2 cut(s)	567, 932
BisI	GCNGC	2 cut(s)	787, 898
BlsI	GCNGC	2 cut(s)	788, 899
Bme1390I	CCNGG	2 cut(s)	167, 168
Bme18I	GGWCC	1 cut(s)	655
BmeT110I	CYCGRG	3 cut(s)	166, 281, 311
BmgBI	CACGTC	1 cut(s)	748
BmgT120I	GGNCC	2 cut(s)	368, 655
BmiI	GGNNCC	2 cut(s)	369, 668
BmrFI	CCNGG	2 cut(s)	167, 168
BmsI	GCATC	3 cut(s)	451, 926, 984
BpmI	CTGGAG	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	704
BpuMI	CCSGG	2 cut(s)	167, 168
BsaAI	YACGTR	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	4 cut(s)	165, 166, 567, 762
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 763, 946, 1071
BseDI	CCNNGG	4 cut(s)	165, 166, 567, 762
BseGI	GGATG	1 cut(s)	941
BseLI	CCNNNNNNNGG	4 cut(s)	283, 763, 946, 1071
BseMII	CTCAG	1 cut(s)	494
BseSI	GKGCMC	1 cut(s)	671
BseXI	GCAGC	1 cut(s)	798
BseYI	CCCAGC	1 cut(s)	529
BshFI	GGCC	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	666
BsiHKCI	CYCGRG	3 cut(s)	166, 281, 311
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	4 cut(s)	283, 763, 946, 1071
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	387
BsmI	GAATGC	3 cut(s)	454, 840, 926
BsnI	GGCC	1 cut(s)	370
Bso31I	GGTCTC	1 cut(s)	308
BsoBI	CYCGRG	3 cut(s)	166, 281, 311
Bsp1286I	GDGCHC	1 cut(s)	671
Bsp143I	GATC	4 cut(s)	343, 514, 548, 904
Bsp19I	CCATGG	1 cut(s)	762
BspACI	CCGC	1 cut(s)	897
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	1 cut(s)	495
BspLI	GGNNCC	2 cut(s)	369, 668
BspPI	GGATC	1 cut(s)	556
BspT107I	GGYRCC	1 cut(s)	666
BspTNI	GGTCTC	1 cut(s)	308
BssECI	CCNNGG	4 cut(s)	165, 166, 567, 762
BssMI	GATC	4 cut(s)	343, 514, 548, 904
BssSI	CACGAG	1 cut(s)	1069
BssT1I	CCWWGG	2 cut(s)	567, 762
Bst2BI	CACGAG	1 cut(s)	1069
Bst6I	CTCTTC	2 cut(s)	1006, 1053
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstBAI	YACGTR	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	104, 838
BstDEI	CTNAG	4 cut(s)	193, 503, 536, 901
BstDSI	CCRYGG	1 cut(s)	762
BstEII	GGTNACC	1 cut(s)	826
BstF5I	GGATG	1 cut(s)	941
BstH2I	RGCGCY	2 cut(s)	567, 932
BstHHI	GCGC	3 cut(s)	466, 566, 931
BstKTI	GATC	4 cut(s)	346, 517, 551, 907
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	4 cut(s)	343, 514, 548, 904
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 539, 704
BstPI	GGTNACC	1 cut(s)	826
BstSCI	CCNGG	2 cut(s)	165, 166
BstSLI	GKGCMC	1 cut(s)	671
BstV1I	GCAGC	1 cut(s)	798
BsuRI	GGCC	1 cut(s)	370
BtgI	CCRYGG	1 cut(s)	762
BtrI	CACGTC	1 cut(s)	748
BtsCI	GGATG	1 cut(s)	941
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	2 cut(s)	113, 678
Cac8I	GCNNGC	2 cut(s)	104, 838
CfoI	GCGC	3 cut(s)	466, 566, 931
Cfr13I	GGNCC	2 cut(s)	368, 655
Cfr9I	CCCGGG	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	67, 161
CviAII	CATG	4 cut(s)	252, 322, 341, 763
CviJI	RGCY	8 cut(s)	217, 293, 330, 370, 836, 874, 900, 1032
CviKI_1	RGCY	8 cut(s)	217, 293, 330, 370, 836, 874, 900, 1032
CviQI	GTAC	2 cut(s)	67, 161
DdeI	CTNAG	4 cut(s)	193, 503, 536, 901
DpnI	GATC	4 cut(s)	345, 516, 550, 906
DpnII	GATC	4 cut(s)	343, 514, 548, 904
DraIII	CACNNNGTG	1 cut(s)	1071
Eam1104I	CTCTTC	2 cut(s)	1006, 1053
EarI	CTCTTC	2 cut(s)	1006, 1053
Eco130I	CCWWGG	2 cut(s)	567, 762
Eco31I	GGTCTC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	655
Eco47III	AGCGCT	1 cut(s)	930
Eco72I	CACGTG	1 cut(s)	212
Eco88I	CYCGRG	3 cut(s)	166, 281, 311
Eco91I	GGTNACC	1 cut(s)	826
EcoO65I	GGTNACC	1 cut(s)	826
EcoT14I	CCWWGG	2 cut(s)	567, 762
EcoT22I	ATGCAT	1 cut(s)	926
ErhI	CCWWGG	2 cut(s)	567, 762
FaeI	CATG	4 cut(s)	255, 325, 344, 766
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	4 cut(s)	251, 321, 340, 762
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	2 cut(s)	787, 898
FokI	GGATG	1 cut(s)	948
Fsp4HI	GCNGC	2 cut(s)	787, 898
FspBI	CTAG	3 cut(s)	180, 978, 1008
GlaI	GCGC	3 cut(s)	465, 565, 930
GluI	GCNGC	2 cut(s)	787, 898
GsaI	CCCAGC	1 cut(s)	533
GsuI	CTGGAG	1 cut(s)	474
HaeII	RGCGCY	2 cut(s)	567, 932
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	1 cut(s)	167
HhaI	GCGC	3 cut(s)	466, 566, 931
Hin1II	CATG	4 cut(s)	255, 325, 344, 766
Hin6I	GCGC	3 cut(s)	464, 564, 929
HinP1I	GCGC	3 cut(s)	464, 564, 929
HincII	GTYRAC	1 cut(s)	975
HindII	GTYRAC	1 cut(s)	975
HinfI	GANTC	3 cut(s)	83, 183, 950
HpaI	GTTAAC	1 cut(s)	975
HpaII	CCGG	1 cut(s)	167
Hpy166II	GTNNAC	3 cut(s)	380, 745, 975
Hpy188I	TCNGA	6 cut(s)	129, 206, 504, 526, 754, 913
Hpy188III	TCNNGA	5 cut(s)	43, 305, 313, 414, 646
Hpy8I	GTNNAC	3 cut(s)	380, 745, 975
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	328
HpyCH4IV	ACGT	3 cut(s)	124, 211, 747
HpyCH4V	TGCA	7 cut(s)	102, 707, 786, 848, 881, 924, 997
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 539, 704
HpyF3I	CTNAG	4 cut(s)	193, 503, 536, 901
HpySE526I	ACGT	3 cut(s)	124, 211, 747
Hsp92II	CATG	4 cut(s)	255, 325, 344, 766
HspAI	GCGC	3 cut(s)	464, 564, 929
KspAI	GTTAAC	1 cut(s)	975
Kzo9I	GATC	4 cut(s)	343, 514, 548, 904
LmnI	GCTCC	3 cut(s)	432, 879, 1037
LpnPI	CCDG	7 cut(s)	80, 180, 313, 427, 438, 543, 822
Lsp1109I	GCAGC	1 cut(s)	798
LweI	GCATC	3 cut(s)	451, 926, 984
MaeI	CTAG	3 cut(s)	180, 978, 1008
MaeII	ACGT	3 cut(s)	124, 211, 747
MaeIII	GTNAC	3 cut(s)	302, 826, 958
MalI	GATC	4 cut(s)	345, 516, 550, 906
MboI	GATC	4 cut(s)	343, 514, 548, 904
MboII	GAAGA	4 cut(s)	546, 1023, 1034, 1040
MfeI	CAATTG	1 cut(s)	543
MhlI	GDGCHC	1 cut(s)	671
MlyI	GAGTC	1 cut(s)	959
MnlI	CCTC	8 cut(s)	277, 290, 643, 681, 683, 728, 1056, 1078
Mph1103I	ATGCAT	1 cut(s)	926
MseI	TTAA	6 cut(s)	33, 113, 510, 893, 974, 1020
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	2 cut(s)	167, 168
MunI	CAATTG	1 cut(s)	543
Mva1269I	GAATGC	3 cut(s)	454, 840, 926
MwoI	GCNNNNNNNGC	3 cut(s)	223, 539, 704
NciI	CCSGG	2 cut(s)	167, 168
NcoI	CCATGG	1 cut(s)	762
NdeII	GATC	4 cut(s)	343, 514, 548, 904
NlaIII	CATG	4 cut(s)	255, 325, 344, 766
NlaIV	GGNNCC	2 cut(s)	369, 668
NmeAIII	GCCGAG	1 cut(s)	455
NmuCI	GTSAC	1 cut(s)	302
NsiI	ATGCAT	1 cut(s)	926
PaeR7I	CTCGAG	2 cut(s)	281, 311
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PctI	GAATGC	3 cut(s)	454, 840, 926
PfeI	GAWTC	2 cut(s)	83, 183
PflMI	CCANNNNNTGG	2 cut(s)	763, 1071
PkrI	GCNGC	2 cut(s)	788, 899
PleI	GAGTC	1 cut(s)	958
PmaCI	CACGTG	1 cut(s)	212
PmlI	CACGTG	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	958
Ppu21I	YACGTR	1 cut(s)	212
PspCI	CACGTG	1 cut(s)	212
PspEI	GGTNACC	1 cut(s)	826
PspFI	CCCAGC	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	369, 668
PspPI	GGNCC	2 cut(s)	368, 655
PspXI	VCTCGAGB	1 cut(s)	281
RsaI	GTAC	2 cut(s)	68, 162
RsaNI	GTAC	2 cut(s)	67, 161
SaqAI	TTAA	6 cut(s)	33, 113, 510, 893, 974, 1020
SatI	GCNGC	2 cut(s)	787, 898
Sau3AI	GATC	4 cut(s)	343, 514, 548, 904
Sau96I	GGNCC	2 cut(s)	368, 655
SchI	GAGTC	1 cut(s)	959
ScrFI	CCNGG	2 cut(s)	167, 168
SduI	GDGCHC	1 cut(s)	671
SfaNI	GCATC	3 cut(s)	451, 926, 984
Sfr274I	CTCGAG	2 cut(s)	281, 311
SinI	GGWCC	1 cut(s)	655
SlaI	CTCGAG	2 cut(s)	281, 311
SmaI	CCCGGG	1 cut(s)	168
SmlI	CTYRAG	3 cut(s)	281, 311, 719
SmoI	CTYRAG	3 cut(s)	281, 311, 719
SsiI	CCGC	1 cut(s)	897
SspMI	CTAG	3 cut(s)	180, 978, 1008
StyD4I	CCNGG	2 cut(s)	165, 166
StyI	CCWWGG	2 cut(s)	567, 762
TaiI	ACGT	3 cut(s)	127, 214, 750
TaqI	TCGA	2 cut(s)	282, 312
TaqII	GACCGA	1 cut(s)	284
TauI	GCSGC	1 cut(s)	900
TfiI	GAWTC	2 cut(s)	83, 183
Tru1I	TTAA	6 cut(s)	33, 113, 510, 893, 974, 1020
Tru9I	TTAA	6 cut(s)	33, 113, 510, 893, 974, 1020
TscAI	CASTG	2 cut(s)	113, 685
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	1 cut(s)	786
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	310
TspGWI	ACGGA	1 cut(s)	148
TspMI	CCCGGG	1 cut(s)	166
TspRI	CASTG	2 cut(s)	113, 685
Van91I	CCANNNNNTGG	2 cut(s)	763, 1071
VpaK11BI	GGWCC	1 cut(s)	655
XapI	RAATTY	1 cut(s)	1022
XcmI	CCANNNNNNNNNTGG	2 cut(s)	565, 649
XhoI	CTCGAG	2 cut(s)	281, 311
XmaI	CCCGGG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	379
XspI	CTAG	3 cut(s)	180, 978, 1008
Zsp2I	ATGCAT	1 cut(s)	926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.