Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008126

Physical Location & Seq

Genomic Coordinates Forward (+)

15327353 .. 15328540

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18342.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGTGTAGGCGCCAAGAAAAAACCAGGGTGGTCTAGAAATTCCATGCTGAACGACGACGTACTCTCCCAAATCCTCACCAAGGTCATCGAGAAAGAAGACAGAAAAGCATTCTCCGAGATTTCAGATCAGTGGAGCAAACTAAGAAAAAGGCCAAACAAAAAATCGTGGTACTATCCAGACTGCGACAACCGGCTCGAAGAGATGGCCAAATCGTGTCCCAAGCTCGAGACATTCGTGGTGATAACTGATAAATCCTCATATATACAAAAAGATGGTCTTTTGGGACCGAAAGGTCTAAGAGCTCTGGGAGATTGGTGTCCCCAATTGGCTACACTTGTGTTTGAGGGGATCTATCTGGTAGGGGATGTTGGATTGAATGCTGATGTGGGACTGGGATTCTTGGCAAATGGGTCTATCTCAAAGACCCTCATGAAATTGATCATTGAGTGTTGCGAGAGAATTACTGATGCTGGCATCCAGCATCTGGTCAAAATGAGTTGCTTGGAGCACTTGGAATTGACCTATCGACCCTATCAACCCTTTGACCGAGTCGGAGTCACTGATGTTGGAGGTGAGGCGATCTCTAGGATTCAATCCCTCAGGGAGTTGAGATTGAATGATGTTCGAGGGTTTTCGGACGCTACAGTTGTTGCTCTTGCGGAGAATTGTCCCAACTTGGAAGTACTTGCTTTGTGTTGTGGACAGAAAAATGGAGGTGTGACTGCGGCTGGCATTCGTGCATTGTCAAGTCATCAATGCTTGAAACACTTAGCATTGTTTGATGTCAGAAACTTAGGTGAGTCTGATGTGATGCGGATAGTGTTTGGATGCCCGTCATTGGAGTCTCTGGTGGTAGATGAGTCGTTAGCTAGCAGCTTTGAATGGATACGCAAGAACAACGACGATGCTAGAAGAGTGGTCAAGTCTGGATCCTATGCTAGTCCCCTTCCCCATTTCAGGACCACCAGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

326

Amino Acids

36.13

Weight (kDa)

8.23

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008126)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37241 FvH4_3g00150 FvH4_3g11250 FvH4_3g11250 FvH4_3g11250 FvH4_3g11280 FvH4_3g44530 FvH4_5g09361 FvH4_5g12191 FvH4_5g12240 FvH4_7g07300 FvH4_7g18342 FvH4_7g29850 FvH4_7g29850
rosa_chinensis	RchiOBHm_Chr7g0185371
rosa_laevigata	RLG00000004918
rosa_multiflora	Rmu_sc0001761.1_g000014 Rmu_sc0008496.1_g000001
rosa_rugosa	Rorug06G0468500 Rorug06G0468600
rosa_samantha	Rh7AG074300 Rh7BG073100 Rh7DG073500
rosa_wichuraiana	Rw7G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	294
AccB1I	GGYRCC	1 cut(s)	11
AccB7I	CCANNNNNTGG	2 cut(s)	487, 972
AciI	CCGC	3 cut(s)	662, 728, 817
AclWI	GGATC	3 cut(s)	359, 927, 940
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	40
AcyI	GRCGYC	1 cut(s)	12
AdeI	CACNNNGTG	1 cut(s)	972
AfaI	GTAC	3 cut(s)	63, 173, 687
AfiI	CCNNNNNNNGG	5 cut(s)	82, 487, 841, 960, 972
AgsI	TTSAA	5 cut(s)	379, 596, 619, 766, 884
AjnI	CCWGG	2 cut(s)	25, 968
AluBI	AGCT	4 cut(s)	226, 305, 872, 879
AluI	AGCT	4 cut(s)	226, 305, 872, 879
Alw21I	GWGCWC	2 cut(s)	307, 513
Alw26I	GTCTC	2 cut(s)	224, 852
AlwI	GGATC	3 cut(s)	359, 927, 940
AlwNI	CAGNNNCTG	1 cut(s)	487
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	2 cut(s)	152, 207
ApeKI	GCWGC	1 cut(s)	876
ApoI	RAATTY	1 cut(s)	40
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	287, 963
AsuHPI	GGTGA	4 cut(s)	70, 253, 587, 812
AsuNHI	GCTAGC	1 cut(s)	872
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	2 cut(s)	287, 963
AxyI	CCTNAGG	1 cut(s)	602
BalI	TGGCCA	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	932
BanI	GGYRCC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	307, 513
BbvI	GCAGC	1 cut(s)	888
BccI	CCATC	2 cut(s)	199, 269
BciT130I	CCWGG	2 cut(s)	27, 970
BciVI	GTATCC	1 cut(s)	882
BclI	TGATCA	1 cut(s)	441
BcoDI	GTCTC	2 cut(s)	224, 852
BfaI	CTAG	5 cut(s)	36, 588, 873, 912, 942
BfmI	CTRYAG	1 cut(s)	645
BfoI	RGCGCY	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	882
BisI	GCNGC	2 cut(s)	729, 877
BlsI	GCNGC	2 cut(s)	730, 878
BmcAI	AGTACT	1 cut(s)	687
Bme1390I	CCNGG	2 cut(s)	27, 970
Bme18I	GGWCC	2 cut(s)	287, 963
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	287, 963
BmiI	GGNNCC	3 cut(s)	13, 288, 934
BmrFI	CCNGG	2 cut(s)	27, 970
BmrI	ACTGGG	1 cut(s)	404
BmsI	GCATC	6 cut(s)	460, 486, 493, 804, 821, 898
BmtI	GCTAGC	1 cut(s)	876
BmuI	ACTGGG	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	105
BplI	GAGNNNNNCTC	2 cut(s)	569, 601
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	26, 81
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 487, 841, 960, 972
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	399
Bse21I	CCTNAGG	1 cut(s)	602
BseBI	CCWGG	2 cut(s)	27, 970
BseDI	CCNNGG	2 cut(s)	26, 81
BseGI	GGATG	3 cut(s)	373, 477, 836
BseLI	CCNNNNNNNGG	5 cut(s)	82, 487, 841, 960, 972
BseMII	CTCAG	1 cut(s)	616
BseNI	ACTGG	1 cut(s)	399
BseXI	GCAGC	1 cut(s)	888
BshFI	GGCC	2 cut(s)	154, 209
BshNI	GGYRCC	1 cut(s)	11
BsiHKAI	GWGCWC	2 cut(s)	307, 513
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	193
BslFI	GGGAC	6 cut(s)	204, 300, 306, 405, 657, 930
BslI	CCNNNNNNNGG	5 cut(s)	82, 487, 841, 960, 972
BsmAI	GTCTC	2 cut(s)	224, 852
BsmFI	GGGAC	6 cut(s)	204, 300, 306, 405, 657, 930
BsmI	GAATGC	3 cut(s)	110, 385, 735
BsnI	GGCC	2 cut(s)	154, 209
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	307, 513
Bsp143I	GATC	5 cut(s)	127, 351, 441, 582, 932
BspACI	CCGC	3 cut(s)	662, 728, 817
BspANI	GGCC	2 cut(s)	154, 209
BspCNI	CTCAG	1 cut(s)	615
BspHI	TCATGA	1 cut(s)	432
BspLI	GGNNCC	3 cut(s)	13, 288, 934
BspOI	GCTAGC	1 cut(s)	876
BspPI	GGATC	3 cut(s)	359, 927, 940
BspT107I	GGYRCC	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	399
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	26, 81
BssMI	GATC	5 cut(s)	127, 351, 441, 582, 932
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	27, 970
Bst4CI	ACNGT	1 cut(s)	649
Bst6I	CTCTTC	2 cut(s)	195, 910
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	3 cut(s)	475, 733, 874
BstDEI	CTNAG	5 cut(s)	143, 299, 602, 772, 796
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstF5I	GGATG	3 cut(s)	373, 477, 836
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	5 cut(s)	130, 354, 444, 585, 935
BstMAI	GTCTC	2 cut(s)	224, 852
BstMBI	GATC	5 cut(s)	127, 351, 441, 582, 932
BstNI	CCWGG	2 cut(s)	27, 970
BstSCI	CCNGG	2 cut(s)	25, 968
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	1 cut(s)	888
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	2 cut(s)	351, 932
BstYI	RGATCY	2 cut(s)	351, 932
Bsu36I	CCTNAGG	1 cut(s)	602
BsuI	GTATCC	1 cut(s)	882
BsuRI	GGCC	2 cut(s)	154, 209
BtsCI	GGATG	3 cut(s)	373, 477, 836
BtsIMutI	CAGTG	2 cut(s)	137, 561
Cac8I	GCNNGC	3 cut(s)	475, 733, 874
CaiI	CAGNNNCTG	1 cut(s)	487
CciI	TCATGA	1 cut(s)	432
CfoI	GCGC	1 cut(s)	14
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	287, 963
CseI	GACGC	1 cut(s)	650
CsiI	ACCWGGT	1 cut(s)	968
Csp6I	GTAC	3 cut(s)	62, 172, 686
CviAII	CATG	2 cut(s)	46, 433
CviJI	RGCY	9 cut(s)	154, 196, 209, 226, 305, 332, 731, 872, 879
CviKI_1	RGCY	9 cut(s)	154, 196, 209, 226, 305, 332, 731, 872, 879
CviQI	GTAC	3 cut(s)	62, 172, 686
DdeI	CTNAG	5 cut(s)	143, 299, 602, 772, 796
DinI	GGCGCC	1 cut(s)	13
DpnI	GATC	5 cut(s)	129, 353, 443, 584, 934
DpnII	GATC	5 cut(s)	127, 351, 441, 582, 932
DraIII	CACNNNGTG	1 cut(s)	972
DrdI	GACNNNNNNGTC	1 cut(s)	294
DseDI	GACNNNNNNGTC	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	195, 910
EarI	CTCTTC	2 cut(s)	195, 910
Ecl136II	GAGCTC	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	307
Eco47I	GGWCC	2 cut(s)	287, 963
Eco53kI	GAGCTC	1 cut(s)	305
Eco81I	CCTNAGG	1 cut(s)	602
Eco88I	CYCGRG	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	305
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	25, 968
EcoT14I	CCWWGG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	307
EgeI	GGCGCC	1 cut(s)	13
EheI	GGCGCC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	2 cut(s)	49, 436
FaiI	YATR	6 cut(s)	47, 262, 264, 266, 434, 939
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	6 cut(s)	204, 300, 306, 405, 657, 930
FatI	CATG	2 cut(s)	45, 432
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	729, 877
FokI	GGATG	3 cut(s)	380, 464, 843
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	2 cut(s)	729, 877
FspBI	CTAG	5 cut(s)	36, 588, 873, 912, 942
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	2 cut(s)	729, 877
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	154, 209
HapII	CCGG	1 cut(s)	193
HgaI	GACGC	1 cut(s)	650
HhaI	GCGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	49, 436
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	7 cut(s)	399, 552, 558, 592, 803, 845, 863
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	4 cut(s)	70, 253, 587, 812
Hpy166II	GTNNAC	1 cut(s)	704
Hpy188I	TCNGA	6 cut(s)	118, 127, 557, 640, 791, 808
Hpy188III	TCNNGA	7 cut(s)	36, 91, 179, 229, 433, 930, 961
Hpy8I	GTNNAC	1 cut(s)	704
Hpy99I	CGWCG	3 cut(s)	59, 62, 908
HpyAV	CCTTC	1 cut(s)	959
HpyCH4III	ACNGT	1 cut(s)	649
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	743
HpyF3I	CTNAG	5 cut(s)	143, 299, 602, 772, 796
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	49, 436
HspAI	GCGC	1 cut(s)	12
KasI	GGCGCC	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	5 cut(s)	127, 351, 441, 582, 932
LmnI	GCTCC	2 cut(s)	135, 508
Lsp1109I	GCAGC	1 cut(s)	888
LweI	GCATC	6 cut(s)	460, 486, 493, 804, 821, 898
MabI	ACCWGGT	1 cut(s)	968
MaeI	CTAG	5 cut(s)	36, 588, 873, 912, 942
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	559, 721
MalI	GATC	5 cut(s)	129, 353, 443, 584, 934
MboI	GATC	5 cut(s)	127, 351, 441, 582, 932
MboII	GAAGA	3 cut(s)	110, 212, 927
MfeI	CAATTG	1 cut(s)	326
MflI	RGATCY	2 cut(s)	351, 932
MhlI	GDGCHC	2 cut(s)	307, 513
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	6 cut(s)	40, 326, 437, 462, 518, 667
MluNI	TGGCCA	1 cut(s)	209
Mly113I	GGCGCC	1 cut(s)	12
MlyI	GAGTC	5 cut(s)	561, 567, 812, 854, 872
MmeI	TCCRAC	3 cut(s)	352, 535, 550
MnlI	CCTC	9 cut(s)	86, 268, 340, 440, 566, 571, 611, 623, 710
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	209
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	2 cut(s)	27, 970
MunI	CAATTG	1 cut(s)	326
Mva1269I	GAATGC	3 cut(s)	110, 385, 735
MvaI	CCWGG	2 cut(s)	27, 970
NarI	GGCGCC	1 cut(s)	12
NdeII	GATC	5 cut(s)	127, 351, 441, 582, 932
NheI	GCTAGC	1 cut(s)	872
NlaIII	CATG	2 cut(s)	49, 436
NlaIV	GGNNCC	3 cut(s)	13, 288, 934
NmuCI	GTSAC	2 cut(s)	559, 721
PaeR7I	CTCGAG	1 cut(s)	227
PagI	TCATGA	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	3 cut(s)	110, 385, 735
PfeI	GAWTC	2 cut(s)	399, 592
PflFI	GACNNNGTC	1 cut(s)	551
PflMI	CCANNNNNTGG	2 cut(s)	487, 972
PkrI	GCNGC	2 cut(s)	730, 878
PleI	GAGTC	5 cut(s)	560, 566, 811, 853, 871
PluTI	GGCGCC	1 cut(s)	15
PpsI	GAGTC	5 cut(s)	560, 566, 811, 853, 871
Psp124BI	GAGCTC	1 cut(s)	307
Psp6I	CCWGG	2 cut(s)	25, 968
PspGI	CCWGG	2 cut(s)	25, 968
PspN4I	GGNNCC	3 cut(s)	13, 288, 934
PspPI	GGNCC	2 cut(s)	287, 963
PstNI	CAGNNNCTG	1 cut(s)	487
PsuI	RGATCY	2 cut(s)	351, 932
PsyI	GACNNNGTC	1 cut(s)	551
RsaI	GTAC	3 cut(s)	63, 173, 687
RsaNI	GTAC	3 cut(s)	62, 172, 686
SacI	GAGCTC	1 cut(s)	307
SatI	GCNGC	2 cut(s)	729, 877
Sau3AI	GATC	5 cut(s)	127, 351, 441, 582, 932
Sau96I	GGNCC	2 cut(s)	287, 963
ScaI	AGTACT	1 cut(s)	687
SchI	GAGTC	5 cut(s)	561, 567, 812, 854, 872
ScrFI	CCNGG	2 cut(s)	27, 970
SduI	GDGCHC	2 cut(s)	307, 513
SexAI	ACCWGGT	1 cut(s)	968
SfaNI	GCATC	6 cut(s)	460, 486, 493, 804, 821, 898
SfcI	CTRYAG	1 cut(s)	645
SfoI	GGCGCC	1 cut(s)	13
Sfr274I	CTCGAG	1 cut(s)	227
SinI	GGWCC	2 cut(s)	287, 963
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	6 cut(s)	40, 326, 437, 462, 518, 667
SsiI	CCGC	3 cut(s)	662, 728, 817
SspDI	GGCGCC	1 cut(s)	11
SspMI	CTAG	5 cut(s)	36, 588, 873, 912, 942
SstI	GAGCTC	1 cut(s)	307
StyD4I	CCNGG	2 cut(s)	25, 968
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	649
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	5 cut(s)	90, 198, 228, 529, 628
TaqII	GACCGA	2 cut(s)	304, 564
TasI	AATT	6 cut(s)	40, 326, 437, 462, 518, 667
TatI	WGTACW	1 cut(s)	685
TauI	GCSGC	1 cut(s)	731
TfiI	GAWTC	2 cut(s)	399, 592
TscAI	CASTG	2 cut(s)	137, 568
TseFI	GTSAC	2 cut(s)	559, 721
TseI	GCWGC	1 cut(s)	876
Tsp45I	GTSAC	2 cut(s)	559, 721
TspDTI	ATGAA	1 cut(s)	449
TspRI	CASTG	2 cut(s)	137, 568
Tth111I	GACNNNGTC	1 cut(s)	551
Van91I	CCANNNNNTGG	2 cut(s)	487, 972
VpaK11BI	GGWCC	2 cut(s)	287, 963
XagI	CCTNNNNNAGG	1 cut(s)	80
XapI	RAATTY	1 cut(s)	40
XbaI	TCTAGA	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	227
XspI	CTAG	5 cut(s)	36, 588, 873, 912, 942
ZrmI	AGTACT	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.