Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008126

Physical Location & Seq

Genomic Coordinates Reverse (-)

7278181 .. 7279982

Gene Structure 1802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGTTAGACGTCGTAGCGTCAAAAAGAAATCAGCGACGATTAATTCGATGCTGGACGAACATGTGCTTGGCCTAATCCTTGAGAAAATCAAGGACAAAGAAGACAGAGACTCGTTCTCGGAGGTGTGCAAGAGTTGGTTAAGAGTGGAACGTGTGACACGAAGATCACTTAGGGTTAGGCAACCAATACCCCTGAAAGCAATGACTGCATTCCCATACCTGGTCCATTTCAAATCAGGTGAGCTTACCACACGAAGGAAAAAGAGAAACAAAAGAGTATGGGAGTATCCGCAGACAGACACCCACCTGGAGGTCATAGCCAATAGGTGCCACGAACTCGAGACCTTCAAGGTATCATGTAGGAACTATGATCATGATCATGCTCATTTGGGGCCAAAAGGTCTACATGCTTTGGCATTTGGGTGTCCCAAACTATCCACACTTGGATTTTGTGGCAGTAAGGTGGTAGGGAATCCTGGAGTTGATGCGTTTTTTCACTCAGTACAAAACTTGAAGAATTTGTATCTGATTGGTAATGTTCTTATCTCTGATCGAGCACTTAGAGCAATCGGATCATCTTCCATTAGCACCTTGGAGTTGGTATACTGTGATAACATTACTGATGAGGGATTGGGGTTTTTGGCAAATGGTTCTACCTCTAAAACCCTCAAGAAACTGGTCCTCAAGGATTGCCCTAAAATCACTGATAAAGGGGCCGAGCTATTGCGCAACATGTGTAGATTGGAGCACCTGGCATTGTGCTGTAAGGTGAGGAGTCGGTTCACTGATACAGGTGGTGTGGCAATTTCTGCATTTCAGACCCTCAAGGAATTGAGATTGAGTCATGTGGACGTGTCAGACCGCACCATGGTTGCTCTTGCTGAGAATTGCAGCAAATTGGAAACACTTGATGTAGAGTCTTATTGGGTAACCGGAGCTGGCATTCGTGCATTTTCAGGTCATAAATGCTTGAAGCACCTTTCAGTAATGTATGGTTCATCAGCCAAATTCGATAAATCAGATGTGGAACGCTTAGCTCTTGGATGCCCATCATTGAAGTCTGTTATATTTGACAAGTCGTTAGAAGGGAGTTTTGAACCGATGCTCGAGAACACTAGAAGAATCATAAAATTCAAAAATTTCTATACTCTTCCCCCTTTCATGACCACGGATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

393

Amino Acids

44.25

Weight (kDa)

9.41

Isoelectric Point (pI)

30.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	19 - 55	1.2e-10	F-box
DUF7885	PF25372	89 - 255	6.5e-11	Leucine Rich Repeat Domain of unknown function (DUF7885)
LRR_At5g56370	PF24758	220 - 318	3.5e-07	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008126)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37241 FvH4_3g00150 FvH4_3g11250 FvH4_3g11250 FvH4_3g11250 FvH4_3g11280 FvH4_3g44530 FvH4_5g09361 FvH4_5g12191 FvH4_5g12240 FvH4_7g07300 FvH4_7g18342 FvH4_7g29850 FvH4_7g29850
rosa_chinensis	RchiOBHm_Chr7g0185371
rosa_laevigata	RLG00000004918
rosa_multiflora	Rmu_sc0001761.1_g000014 Rmu_sc0008496.1_g000001
rosa_rugosa	Rorug06G0468500 Rorug06G0468600
rosa_samantha	Rh7AG074300 Rh7BG073100 Rh7DG073500
rosa_wichuraiana	Rw7G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	13
Acc16I	TGCGCA	1 cut(s)	728
AccB1I	GGYRCC	1 cut(s)	327
AccB7I	CCANNNNNTGG	1 cut(s)	1173
AccI	GTMKAC	2 cut(s)	403, 603
AciI	CCGC	2 cut(s)	290, 862
AclWI	GGATC	1 cut(s)	580
AcsI	RAATTY	4 cut(s)	517, 1007, 1130, 1138
AcyI	GRCGYC	1 cut(s)	10
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	5 cut(s)	220, 255, 310, 868, 1173
AflIII	ACRYGT	4 cut(s)	61, 151, 732, 852
AgsI	TTSAA	7 cut(s)	232, 349, 514, 973, 1057, 1097, 1135
AjiI	CACGTC	1 cut(s)	853
AjnI	CCWGG	4 cut(s)	219, 306, 475, 750
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	4 cut(s)	244, 721, 938, 1037
AluI	AGCT	4 cut(s)	244, 721, 938, 1037
Alw21I	GWGCWC	2 cut(s)	559, 750
Alw26I	GTCTC	2 cut(s)	102, 335
AlwI	GGATC	1 cut(s)	580
Ama87I	CYCGRG	2 cut(s)	338, 1106
AoxI	GGCC	3 cut(s)	70, 392, 714
ApeKI	GCWGC	1 cut(s)	891
ApoI	RAATTY	4 cut(s)	517, 1007, 1130, 1138
ArsI	GACNNNNNNTTYG	2 cut(s)	28, 60
AseI	ATTAAT	1 cut(s)	42
AspLEI	GCGC	1 cut(s)	729
AspS9I	GGNCC	4 cut(s)	223, 392, 679, 714
AsuHPI	GGTGA	2 cut(s)	251, 781
AvaI	CYCGRG	2 cut(s)	338, 1106
AvaII	GGWCC	2 cut(s)	223, 679
BanI	GGYRCC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	2 cut(s)	559, 750
BbvI	GCAGC	1 cut(s)	903
BccI	CCATC	1 cut(s)	1057
BciT130I	CCWGG	4 cut(s)	221, 308, 477, 752
BciVI	GTATCC	1 cut(s)	297
BclI	TGATCA	2 cut(s)	370, 376
BcoDI	GTCTC	2 cut(s)	102, 335
BfaI	CTAG	1 cut(s)	1116
BfuI	GTATCC	1 cut(s)	297
BisI	GCNGC	1 cut(s)	892
BlpI	GCTNAGC	1 cut(s)	1033
BlsI	GCNGC	1 cut(s)	893
Bme1390I	CCNGG	4 cut(s)	221, 308, 477, 752
Bme18I	GGWCC	2 cut(s)	223, 679
BmeT110I	CYCGRG	2 cut(s)	338, 1106
BmgBI	CACGTC	1 cut(s)	853
BmgT120I	GGNCC	4 cut(s)	223, 392, 679, 714
BmiI	GGNNCC	3 cut(s)	329, 393, 715
BmrFI	CCNGG	4 cut(s)	221, 308, 477, 752
BmsI	GCATC	4 cut(s)	39, 475, 1034, 1092
BpiI	GAAGAC	1 cut(s)	108
BpmI	CTGGAG	2 cut(s)	329, 498
Bpu1102I	GCTNAGC	1 cut(s)	1033
BpuEI	CTTGAG	4 cut(s)	101, 653, 668, 809
BsaBI	GATNNNNATC	2 cut(s)	375, 1048
BsaHI	GRCGYC	1 cut(s)	10
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	3 cut(s)	591, 867, 1167
BsaWI	WCCGGW	1 cut(s)	932
Bsc4I	CCNNNNNNNGG	5 cut(s)	220, 255, 310, 868, 1173
Bse1I	ACTGG	1 cut(s)	681
Bse3DI	GCAATG	1 cut(s)	207
Bse8I	GATNNNNATC	2 cut(s)	375, 1048
BseBI	CCWGG	4 cut(s)	221, 308, 477, 752
BseDI	CCNNGG	3 cut(s)	591, 867, 1167
BseGI	GGATG	1 cut(s)	1049
BseJI	GATNNNNATC	2 cut(s)	375, 1048
BseLI	CCNNNNNNNGG	5 cut(s)	220, 255, 310, 868, 1173
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	513, 873
BseNI	ACTGG	1 cut(s)	681
BseRI	GAGGAG	1 cut(s)	787
BseXI	GCAGC	1 cut(s)	903
BshFI	GGCC	3 cut(s)	72, 394, 716
BshNI	GGYRCC	1 cut(s)	327
BsiHKAI	GWGCWC	2 cut(s)	559, 750
BsiHKCI	CYCGRG	2 cut(s)	338, 1106
BsiSI	CCGG	1 cut(s)	933
BslFI	GGGAC	1 cut(s)	411
BslI	CCNNNNNNNGG	5 cut(s)	220, 255, 310, 868, 1173
BsmAI	GTCTC	2 cut(s)	102, 335
BsmFI	GGGAC	1 cut(s)	411
BsmI	GAATGC	2 cut(s)	209, 942
BsnI	GGCC	3 cut(s)	72, 394, 716
Bso31I	GGTCTC	1 cut(s)	335
BsoBI	CYCGRG	2 cut(s)	338, 1106
Bsp1286I	GDGCHC	2 cut(s)	559, 750
Bsp143I	GATC	5 cut(s)	164, 370, 376, 550, 572
Bsp1720I	GCTNAGC	1 cut(s)	1033
Bsp19I	CCATGG	1 cut(s)	867
BspACI	CCGC	2 cut(s)	290, 862
BspANI	GGCC	3 cut(s)	72, 394, 716
BspCNI	CTCAG	2 cut(s)	512, 874
BspHI	TCATGA	2 cut(s)	373, 1161
BspLI	GGNNCC	3 cut(s)	329, 393, 715
BspPI	GGATC	1 cut(s)	580
BspT107I	GGYRCC	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	681
BssECI	CCNNGG	3 cut(s)	591, 867, 1167
BssMI	GATC	5 cut(s)	164, 370, 376, 550, 572
BssNAI	GTATAC	1 cut(s)	604
BssNI	GRCGYC	1 cut(s)	10
BssT1I	CCWWGG	2 cut(s)	591, 867
Bst1107I	GTATAC	1 cut(s)	604
Bst2UI	CCWGG	4 cut(s)	221, 308, 477, 752
Bst4CI	ACNGT	1 cut(s)	608
Bst6I	CTCTTC	1 cut(s)	1155
BstACI	GRCGYC	1 cut(s)	10
BstAPI	GCANNNNNTGC	2 cut(s)	206, 809
BstC8I	GCNNGC	1 cut(s)	940
BstDEI	CTNAG	5 cut(s)	170, 499, 560, 882, 1033
BstDSI	CCRYGG	2 cut(s)	867, 1167
BstEII	GGTNACC	1 cut(s)	928
BstF5I	GGATG	1 cut(s)	1049
BstHHI	GCGC	1 cut(s)	729
BstKTI	GATC	5 cut(s)	167, 373, 379, 553, 575
BstMAI	GTCTC	2 cut(s)	102, 335
BstMBI	GATC	5 cut(s)	164, 370, 376, 550, 572
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 563, 809
BstNI	CCWGG	4 cut(s)	221, 308, 477, 752
BstNSI	RCATGY	3 cut(s)	65, 410, 736
BstPI	GGTNACC	1 cut(s)	928
BstSCI	CCNGG	4 cut(s)	219, 306, 475, 750
BstV1I	GCAGC	1 cut(s)	903
BstV2I	GAAGAC	1 cut(s)	108
BstZ17I	GTATAC	1 cut(s)	604
BsuI	GTATCC	1 cut(s)	297
BsuRI	GGCC	3 cut(s)	72, 394, 716
BtgI	CCRYGG	2 cut(s)	867, 1167
BtrI	CACGTC	1 cut(s)	853
BtsCI	GGATG	1 cut(s)	1049
BtsIMutI	CAGTG	2 cut(s)	702, 783
Cac8I	GCNNGC	1 cut(s)	940
CciI	TCATGA	2 cut(s)	373, 1161
CfoI	GCGC	1 cut(s)	729
Cfr13I	GGNCC	4 cut(s)	223, 392, 679, 714
CseI	GACGC	1 cut(s)	7
CsiI	ACCWGGT	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	503
CviAII	CATG	9 cut(s)	62, 357, 374, 380, 407, 733, 845, 868, 1162
CviJI	RGCY	9 cut(s)	72, 244, 320, 394, 716, 721, 938, 1004, 1037
CviKI_1	RGCY	9 cut(s)	72, 244, 320, 394, 716, 721, 938, 1004, 1037
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	5 cut(s)	170, 499, 560, 882, 1033
DpnI	GATC	5 cut(s)	166, 372, 378, 552, 574
DpnII	GATC	5 cut(s)	164, 370, 376, 550, 572
Eam1104I	CTCTTC	1 cut(s)	1155
EarI	CTCTTC	1 cut(s)	1155
Eco130I	CCWWGG	2 cut(s)	591, 867
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	2 cut(s)	223, 679
Eco88I	CYCGRG	2 cut(s)	338, 1106
Eco91I	GGTNACC	1 cut(s)	928
EcoO65I	GGTNACC	1 cut(s)	928
EcoRII	CCWGG	4 cut(s)	219, 306, 475, 750
EcoT14I	CCWWGG	2 cut(s)	591, 867
ErhI	CCWWGG	2 cut(s)	591, 867
FaeI	CATG	9 cut(s)	65, 360, 377, 383, 410, 736, 848, 871, 1165
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	9 cut(s)	61, 356, 373, 379, 406, 732, 844, 867, 1161
FbaI	TGATCA	2 cut(s)	370, 376
FblI	GTMKAC	2 cut(s)	403, 603
Fnu4HI	GCNGC	1 cut(s)	892
FokI	GGATG	1 cut(s)	1056
Fsp4HI	GCNGC	1 cut(s)	892
FspBI	CTAG	1 cut(s)	1116
FspI	TGCGCA	1 cut(s)	728
GlaI	GCGC	1 cut(s)	728
GluI	GCNGC	1 cut(s)	892
GsuI	CTGGAG	2 cut(s)	329, 498
HaeIII	GGCC	3 cut(s)	72, 394, 716
HapII	CCGG	1 cut(s)	933
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	729
Hin1I	GRCGYC	1 cut(s)	10
Hin1II	CATG	9 cut(s)	65, 360, 377, 383, 410, 736, 848, 871, 1165
Hin6I	GCGC	1 cut(s)	727
HinP1I	GCGC	1 cut(s)	727
HinfI	GANTC	6 cut(s)	110, 472, 775, 841, 917, 1122
HpaII	CCGG	1 cut(s)	933
HphI	GGTGA	2 cut(s)	251, 781
Hpy166II	GTNNAC	4 cut(s)	404, 604, 783, 850
Hpy188I	TCNGA	7 cut(s)	121, 528, 550, 572, 819, 859, 1021
Hpy188III	TCNNGA	5 cut(s)	340, 374, 670, 1108, 1162
Hpy8I	GTNNAC	4 cut(s)	404, 604, 783, 850
Hpy99I	CGWCG	2 cut(s)	15, 40
HpyAV	CCTTC	3 cut(s)	249, 355, 1079
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4IV	ACGT	3 cut(s)	10, 151, 852
HpyCH4V	TGCA	5 cut(s)	129, 209, 812, 891, 950
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 563, 809
HpyF3I	CTNAG	5 cut(s)	170, 499, 560, 882, 1033
HpySE526I	ACGT	3 cut(s)	10, 151, 852
Hsp92I	GRCGYC	1 cut(s)	10
Hsp92II	CATG	9 cut(s)	65, 360, 377, 383, 410, 736, 848, 871, 1165
HspAI	GCGC	1 cut(s)	727
Ksp22I	TGATCA	2 cut(s)	370, 376
Kzo9I	GATC	5 cut(s)	164, 370, 376, 550, 572
LmnI	GCTCC	2 cut(s)	745, 935
Lsp1109I	GCAGC	1 cut(s)	903
LweI	GCATC	4 cut(s)	39, 475, 1034, 1092
MabI	ACCWGGT	1 cut(s)	219
MaeI	CTAG	1 cut(s)	1116
MaeII	ACGT	3 cut(s)	10, 151, 852
MaeIII	GTNAC	2 cut(s)	154, 928
MalI	GATC	5 cut(s)	166, 372, 378, 552, 574
MboI	GATC	5 cut(s)	164, 370, 376, 550, 572
MboII	GAAGA	6 cut(s)	113, 174, 526, 570, 1131, 1142
MhlI	GDGCHC	2 cut(s)	559, 750
MluCI	AATT	9 cut(s)	43, 517, 804, 830, 886, 896, 1007, 1130, 1138
MlyI	GAGTC	4 cut(s)	104, 784, 850, 926
MnlI	CCTC	8 cut(s)	115, 304, 619, 667, 677, 692, 765, 833
MseI	TTAA	2 cut(s)	42, 140
MslI	CAYNNNNRTG	2 cut(s)	378, 421
MspI	CCGG	1 cut(s)	933
MspR9I	CCNGG	4 cut(s)	221, 308, 477, 752
Mva1269I	GAATGC	2 cut(s)	209, 942
MvaI	CCWGG	4 cut(s)	221, 308, 477, 752
MwoI	GCNNNNNNNGC	3 cut(s)	206, 563, 809
NcoI	CCATGG	1 cut(s)	867
NdeII	GATC	5 cut(s)	164, 370, 376, 550, 572
NlaIII	CATG	9 cut(s)	65, 360, 377, 383, 410, 736, 848, 871, 1165
NlaIV	GGNNCC	3 cut(s)	329, 393, 715
NmeAIII	GCCGAG	1 cut(s)	742
NmuCI	GTSAC	1 cut(s)	154
NsbI	TGCGCA	1 cut(s)	728
NspI	RCATGY	3 cut(s)	65, 410, 736
PaeR7I	CTCGAG	2 cut(s)	338, 1106
PagI	TCATGA	2 cut(s)	373, 1161
PciI	ACATGT	2 cut(s)	61, 732
PcsI	WCGNNNNNNNCGW	2 cut(s)	44, 157
PctI	GAATGC	2 cut(s)	209, 942
PfeI	GAWTC	2 cut(s)	472, 1122
PflMI	CCANNNNNTGG	1 cut(s)	1173
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	1 cut(s)	893
PleI	GAGTC	4 cut(s)	104, 783, 849, 925
PpsI	GAGTC	4 cut(s)	104, 783, 849, 925
PscI	ACATGT	2 cut(s)	61, 732
PshBI	ATTAAT	1 cut(s)	42
Psp6I	CCWGG	4 cut(s)	219, 306, 475, 750
PspEI	GGTNACC	1 cut(s)	928
PspGI	CCWGG	4 cut(s)	219, 306, 475, 750
PspN4I	GGNNCC	3 cut(s)	329, 393, 715
PspPI	GGNCC	4 cut(s)	223, 392, 679, 714
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
RseI	CAYNNNNRTG	2 cut(s)	378, 421
SaqAI	TTAA	2 cut(s)	42, 140
SatI	GCNGC	1 cut(s)	892
Sau3AI	GATC	5 cut(s)	164, 370, 376, 550, 572
Sau96I	GGNCC	4 cut(s)	223, 392, 679, 714
SchI	GAGTC	4 cut(s)	104, 784, 850, 926
ScrFI	CCNGG	4 cut(s)	221, 308, 477, 752
SduI	GDGCHC	2 cut(s)	559, 750
SexAI	ACCWGGT	1 cut(s)	219
SfaNI	GCATC	4 cut(s)	39, 475, 1034, 1092
Sfr274I	CTCGAG	2 cut(s)	338, 1106
SinI	GGWCC	2 cut(s)	223, 679
SlaI	CTCGAG	2 cut(s)	338, 1106
SmiMI	CAYNNNNRTG	2 cut(s)	378, 421
SmlI	CTYRAG	6 cut(s)	80, 338, 668, 683, 824, 1106
SmoI	CTYRAG	6 cut(s)	80, 338, 668, 683, 824, 1106
Sse9I	AATT	9 cut(s)	43, 517, 804, 830, 886, 896, 1007, 1130, 1138
SsiI	CCGC	2 cut(s)	290, 862
SspMI	CTAG	1 cut(s)	1116
StyD4I	CCNGG	4 cut(s)	219, 306, 475, 750
StyI	CCWWGG	2 cut(s)	591, 867
TaaI	ACNGT	1 cut(s)	608
TaiI	ACGT	3 cut(s)	13, 154, 855
TaqI	TCGA	5 cut(s)	47, 339, 553, 1011, 1107
TasI	AATT	9 cut(s)	43, 517, 804, 830, 886, 896, 1007, 1130, 1138
TatI	WGTACW	1 cut(s)	502
TfiI	GAWTC	2 cut(s)	472, 1122
Tru1I	TTAA	2 cut(s)	42, 140
Tru9I	TTAA	2 cut(s)	42, 140
TscAI	CASTG	2 cut(s)	709, 790
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	891
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	987, 1150
TspRI	CASTG	2 cut(s)	709, 790
Van91I	CCANNNNNTGG	1 cut(s)	1173
VpaK11BI	GGWCC	2 cut(s)	223, 679
VspI	ATTAAT	1 cut(s)	42
XapI	RAATTY	4 cut(s)	517, 1007, 1130, 1138
XceI	RCATGY	3 cut(s)	65, 410, 736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XhoI	CTCGAG	2 cut(s)	338, 1106
XmiI	GTMKAC	2 cut(s)	403, 603
XspI	CTAG	1 cut(s)	1116
ZraI	GACGTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.