FvH4_3g11280

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008126
Physical Location & Seq
Reverse (-)
6637742 .. 6638902
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11280.t1

Sequence Viewer

Length: 903 bp
ATGTTGAACGACGATTTACTTGCCGAAATCCTTAACAAGGTCGACCGGAAAGAAGATAGAAAATCATTCTCGGAGGTCCAAGGTGATGGTCATTTGGGGACGAAAGGTCTGCGAGCTTTGGGAATTGGGTGTCCCAAATTGTCGTCGCTTATGTTTTGGGGGAACCAAGTGGTAGGGAATGCTGGAGTTGATGCGCTTTTTCAATCAGGGCATAACTTGAAGTCTTTGCATTTGAAGGACATTTATCTAATCTCTGATCATGCATTTAGAGCAATTGGGTCATCTTCCATAAGCATTTTGGAGTTAACACGCTGTCGAAATGTTACTGATGTGGGATTGGGATTCCTGGCAAATGGGTCTACCTCTAAAACCCTCAAAAAATTGATCCTTAGCCATTCCCGTGGAATCACCGATACTGGGATCCAGCTTTTGGTTAAAATGCGTAGCTTAGAGAACCTGGAATTGACGTACTTGAACCAAGTCACTGATATTGGAGGTGTGGCAATATCTGCAATTCAAACCCTCACGGTATTGAAATTGAGTGAAATTTGGAAGTTGTCTGACACTACAGTTGTTGCTCTTGCTGAGAATTGCCGCAACTTGGAAGTACTTGTTTTGGATCATATAGGGCATCGTATAGGGATAAATGAACCTGTAGCCGGAGCTAGCATTCACGCATTTTCAAGACATAAATGCTTGAAGTACCTTGCATTGTATGATTTCGGCAACTTAGATCAGTCTGATGTGGAAATAGTGCTTGGATGCCCCTCATTGGAGTCTCTGGTGTTAGACAAGTCATTAACTGGTATTTTCGGATTGATGCATGGGAACAGCTCTAGAAGGGTGGTCAAGTTTGATTCCTTTTGTAATCCCCATCCCCATTTCATGCCCACTGTGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

301

Amino Acids

32.83

Weight (kDa)

7.19

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 39 - 168 2.9e-08 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 430, 897
AccI GTMKAC 2 cut(s) 42, 359
AciI CCGC 1 cut(s) 595
AclWI GGATC 4 cut(s) 379, 415, 428, 627
AcsI RAATTY 1 cut(s) 546
AdeI CACNNNGTG 1 cut(s) 897
AfaI GTAC 3 cut(s) 470, 609, 704
AfiI CCNNNNNNNGG 7 cut(s) 37, 417, 430, 601, 659, 772, 897
AgsI TTSAA 9 cut(s) 7, 203, 220, 235, 475, 518, 535, 684, 700
AhdI GACNNNNNGTC 1 cut(s) 105
AjnI CCWGG 2 cut(s) 345, 456
AjuI GAANNNNNNNTTGG 2 cut(s) 741, 773
AluBI AGCT 5 cut(s) 116, 427, 447, 665, 834
AluI AGCT 5 cut(s) 116, 427, 447, 665, 834
Alw26I GTCTC 1 cut(s) 783
AlwI GGATC 4 cut(s) 379, 415, 428, 627
ApoI RAATTY 1 cut(s) 546
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 95, 400
AsuNHI GCTAGC 1 cut(s) 665
AvaII GGWCC 1 cut(s) 76
BamHI GGATCC 1 cut(s) 420
BccI CCATC 2 cut(s) 80, 882
BcgI CGANNNNNNTGC 3 cut(s) 36, 91, 125
BciT130I CCWGG 2 cut(s) 347, 458
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 783
BfaI CTAG 2 cut(s) 666, 837
BfmI CTRYAG 2 cut(s) 567, 654
BisI GCNGC 1 cut(s) 595
BlsI GCNGC 1 cut(s) 596
BmcAI AGTACT 1 cut(s) 609
Bme1390I CCNGG 2 cut(s) 347, 458
Bme18I GGWCC 1 cut(s) 76
BmeRI GACNNNNNGTC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 2 cut(s) 164, 422
BmrFI CCNGG 2 cut(s) 347, 458
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 4 cut(s) 181, 640, 752, 810
BmtI GCTAGC 1 cut(s) 669
BmuI ACTGGG 1 cut(s) 426
BpmI CTGGAG 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 79, 400
BsaWI WCCGGW 1 cut(s) 45
Bsc4I CCNNNNNNNGG 7 cut(s) 37, 417, 430, 601, 659, 772, 897
Bse1I ACTGG 2 cut(s) 421, 808
BseBI CCWGG 2 cut(s) 347, 458
BseDI CCNNGG 2 cut(s) 79, 400
BseGI GGATG 2 cut(s) 767, 874
BseLI CCNNNNNNNGG 7 cut(s) 37, 417, 430, 601, 659, 772, 897
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 2 cut(s) 421, 808
Bsh1285I CGRYCG 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 46
BsiSI CCGG 2 cut(s) 46, 660
BslFI GGGAC 2 cut(s) 112, 117
BslI CCNNNNNNNGG 7 cut(s) 37, 417, 430, 601, 659, 772, 897
BsmAI GTCTC 1 cut(s) 783
BsmFI GGGAC 2 cut(s) 112, 117
BsmI GAATGC 2 cut(s) 184, 669
Bsp143I GATC 5 cut(s) 256, 384, 420, 619, 733
BspACI CCGC 1 cut(s) 595
BspCNI CTCAG 1 cut(s) 577
BspLI GGNNCC 2 cut(s) 164, 422
BspOI GCTAGC 1 cut(s) 669
BspPI GGATC 4 cut(s) 379, 415, 428, 627
BsrI ACTGG 2 cut(s) 421, 808
BssECI CCNNGG 2 cut(s) 79, 400
BssMI GATC 5 cut(s) 256, 384, 420, 619, 733
BssT1I CCWWGG 1 cut(s) 79
Bst2UI CCWGG 2 cut(s) 347, 458
Bst4CI ACNGT 3 cut(s) 529, 571, 895
BstAPI GCANNNNNTGC 1 cut(s) 509
BstC8I GCNNGC 2 cut(s) 114, 667
BstDEI CTNAG 4 cut(s) 389, 448, 585, 730
BstDSI CCRYGG 1 cut(s) 400
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 767, 874
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 5 cut(s) 259, 387, 423, 622, 736
BstMAI GTCTC 1 cut(s) 783
BstMBI GATC 5 cut(s) 256, 384, 420, 619, 733
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 269, 509
BstNI CCWGG 2 cut(s) 347, 458
BstSCI CCNGG 2 cut(s) 345, 456
BstSFI CTRYAG 2 cut(s) 567, 654
BstX2I RGATCY 1 cut(s) 420
BstXI CCANNNNNNTGG 2 cut(s) 86, 401
BstYI RGATCY 1 cut(s) 420
BtgI CCRYGG 1 cut(s) 400
BtsCI GGATG 2 cut(s) 767, 874
BtsIMutI CAGTG 2 cut(s) 483, 891
Cac8I GCNNGC 2 cut(s) 114, 667
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 76
Csp6I GTAC 3 cut(s) 469, 608, 703
CviAII CATG 3 cut(s) 260, 824, 886
CviJI RGCY 7 cut(s) 116, 393, 427, 447, 659, 665, 834
CviKI_1 RGCY 7 cut(s) 116, 393, 427, 447, 659, 665, 834
CviQI GTAC 3 cut(s) 469, 608, 703
DdeI CTNAG 4 cut(s) 389, 448, 585, 730
DpnI GATC 5 cut(s) 258, 386, 422, 621, 735
DpnII GATC 5 cut(s) 256, 384, 420, 619, 733
DraIII CACNNNGTG 1 cut(s) 897
DriI GACNNNNNGTC 1 cut(s) 105
Eam1105I GACNNNNNGTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 76
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoRII CCWGG 2 cut(s) 345, 456
EcoT14I CCWWGG 1 cut(s) 79
EcoT22I ATGCAT 2 cut(s) 265, 825
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 3 cut(s) 263, 827, 889
FaqI GGGAC 2 cut(s) 112, 117
FatI CATG 3 cut(s) 259, 823, 885
FbaI TGATCA 1 cut(s) 256
FblI GTMKAC 2 cut(s) 42, 359
Fnu4HI GCNGC 1 cut(s) 595
FokI GGATG 2 cut(s) 774, 861
Fsp4HI GCNGC 1 cut(s) 595
FspBI CTAG 2 cut(s) 666, 837
GlaI GCGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 595
GsuI CTGGAG 1 cut(s) 204
HapII CCGG 2 cut(s) 46, 660
HhaI GCGC 1 cut(s) 196
Hin1II CATG 3 cut(s) 263, 827, 889
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 2 cut(s) 43, 306
HindII GTYRAC 2 cut(s) 43, 306
HinfI GANTC 4 cut(s) 342, 405, 776, 857
HpaI GTTAAC 1 cut(s) 306
HpaII CCGG 2 cut(s) 46, 660
HphI GGTGA 2 cut(s) 95, 400
Hpy166II GTNNAC 3 cut(s) 43, 306, 360
Hpy188I TCNGA 5 cut(s) 73, 256, 562, 742, 815
Hpy188III TCNNGA 2 cut(s) 684, 837
Hpy8I GTNNAC 3 cut(s) 43, 306, 360
Hpy99I CGWCG 2 cut(s) 14, 148
HpyAV CCTTC 2 cut(s) 229, 834
HpyCH4III ACNGT 3 cut(s) 529, 571, 895
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 5 cut(s) 229, 263, 512, 710, 823
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 509
HpyF3I CTNAG 4 cut(s) 389, 448, 585, 730
HpySE526I ACGT 1 cut(s) 467
Hsp92II CATG 3 cut(s) 263, 827, 889
HspAI GCGC 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 256
KspAI GTTAAC 1 cut(s) 306
Kzo9I GATC 5 cut(s) 256, 384, 420, 619, 733
LmnI GCTCC 1 cut(s) 662
LweI GCATC 4 cut(s) 181, 640, 752, 810
MaeI CTAG 2 cut(s) 666, 837
MaeII ACGT 1 cut(s) 467
MaeIII GTNAC 2 cut(s) 322, 481
MalI GATC 5 cut(s) 258, 386, 422, 621, 735
MboI GATC 5 cut(s) 256, 384, 420, 619, 733
MboII GAAGA 2 cut(s) 65, 276
MfeI CAATTG 1 cut(s) 273
MflI RGATCY 1 cut(s) 420
MluCI AATT 9 cut(s) 123, 137, 273, 380, 461, 513, 536, 546, 589
MlyI GAGTC 1 cut(s) 785
MnlI CCTC 6 cut(s) 67, 373, 383, 488, 533, 778
Mph1103I ATGCAT 2 cut(s) 265, 825
MseI TTAA 4 cut(s) 33, 305, 435, 800
MslI CAYNNNNRTG 1 cut(s) 399
MspI CCGG 2 cut(s) 46, 660
MspR9I CCNGG 2 cut(s) 347, 458
MunI CAATTG 1 cut(s) 273
Mva1269I GAATGC 2 cut(s) 184, 669
MvaI CCWGG 2 cut(s) 347, 458
MwoI GCNNNNNNNGC 2 cut(s) 269, 509
NdeII GATC 5 cut(s) 256, 384, 420, 619, 733
NheI GCTAGC 1 cut(s) 665
NlaIII CATG 3 cut(s) 263, 827, 889
NlaIV GGNNCC 2 cut(s) 164, 422
NmuCI GTSAC 1 cut(s) 481
NsiI ATGCAT 2 cut(s) 265, 825
PctI GAATGC 2 cut(s) 184, 669
PfeI GAWTC 3 cut(s) 342, 405, 857
PflMI CCANNNNNTGG 2 cut(s) 430, 897
PkrI GCNGC 1 cut(s) 596
PleI GAGTC 1 cut(s) 784
PpsI GAGTC 1 cut(s) 784
Psp6I CCWGG 2 cut(s) 345, 456
PspGI CCWGG 2 cut(s) 345, 456
PspN4I GGNNCC 2 cut(s) 164, 422
PspPI GGNCC 1 cut(s) 76
PsuI RGATCY 1 cut(s) 420
RsaI GTAC 3 cut(s) 470, 609, 704
RsaNI GTAC 3 cut(s) 469, 608, 703
RseI CAYNNNNRTG 1 cut(s) 399
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 4 cut(s) 33, 305, 435, 800
SatI GCNGC 1 cut(s) 595
Sau3AI GATC 5 cut(s) 256, 384, 420, 619, 733
Sau96I GGNCC 1 cut(s) 76
ScaI AGTACT 1 cut(s) 609
SchI GAGTC 1 cut(s) 785
ScrFI CCNGG 2 cut(s) 347, 458
SfaNI GCATC 4 cut(s) 181, 640, 752, 810
SfcI CTRYAG 2 cut(s) 567, 654
SinI GGWCC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 399
Sse9I AATT 9 cut(s) 123, 137, 273, 380, 461, 513, 536, 546, 589
SsiI CCGC 1 cut(s) 595
SspMI CTAG 2 cut(s) 666, 837
StyD4I CCNGG 2 cut(s) 345, 456
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 3 cut(s) 529, 571, 895
TaiI ACGT 1 cut(s) 470
TaqI TCGA 2 cut(s) 42, 316
TasI AATT 9 cut(s) 123, 137, 273, 380, 461, 513, 536, 546, 589
TatI WGTACW 1 cut(s) 607
TauI GCSGC 1 cut(s) 597
TfiI GAWTC 3 cut(s) 342, 405, 857
Tru1I TTAA 4 cut(s) 33, 305, 435, 800
Tru9I TTAA 4 cut(s) 33, 305, 435, 800
TscAI CASTG 2 cut(s) 490, 898
TseFI GTSAC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 2 cut(s) 663, 874
TspRI CASTG 2 cut(s) 490, 898
Van91I CCANNNNNTGG 2 cut(s) 430, 897
VpaK11BI GGWCC 1 cut(s) 76
XagI CCTNNNNNAGG 1 cut(s) 35
XapI RAATTY 1 cut(s) 546
XbaI TCTAGA 1 cut(s) 836
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XmiI GTMKAC 2 cut(s) 42, 359
XspI CTAG 2 cut(s) 666, 837
ZrmI AGTACT 1 cut(s) 609
Zsp2I ATGCAT 2 cut(s) 265, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.