Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008126

Physical Location & Seq

Genomic Coordinates Reverse (-)

5509381 .. 5510139

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16542

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTAAGCTGTGAGAAGCATGATCTACAAAATGATGGTCATTTGGGGCCAAAAGGTCTACAAGCATTGGGAAATGGGTGTCCCAAATTATCCAGACTTATGTTTTGTGGGAGCAAGGTGGTAGGGAATGCTGGAGTTGATGCGCTTTTTCACTCGGCACATAACTTGAAGTCTTTGTATCTGAGTTTTAATGATCTAATATCTGACCCAGCACTTAGAGCAATTGGATCATCTTCCATTAGCGCCTTGGAATTGGTATTTTGTGATAAAATTACTGATGTAGGATTAGGGTTTTTGGCAAATGGTTCTACCTCAAAAACCATCAAGAAATTGGTCCTTGTGGGGTGCCCTCTTATCACTGATATTGGAGGTGTGGCAATTTCTGCAATTCAAACCCTCAAGGTATTGAGATTGAATGATGTGGACGTGTCAGACCATACCATGGTCGCTCTTGCCAAGAATTGCAGCAAAATAGAAATACTTGATTTAGAGTATTGTGAAAGGGTAACCGGAGCTGGCATTCGTGCATTTTCAAGTCATAAGTGCTTGAAGCTCCTTGCATTGTTTGGTTTAAGCGGCTTGTATCAATCTGATATGGAATGCATAGCGCTTGGATGCCCGTCATTGGAGTCTGTTGTTACAGACAACTTGTTAACTAGGGGTTTTGAATTGATGCAAGAGAACACTAGAAGAGTGGTTAAATTCAAAAGCTCCTATAATCTTCCTCTTCCCCGTTTCAGCACCACCTCGTGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

252

Amino Acids

27.18

Weight (kDa)

8.01

Isoelectric Point (pI)

26.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7885	PF25372	19 - 188	1.4e-16	Leucine Rich Repeat Domain of unknown function (DUF7885)
LRR_At1g61320_AtMIF1	PF23622	75 - 176	8.4e-06	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008126)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37241 FvH4_3g00150 FvH4_3g11250 FvH4_3g11250 FvH4_3g11250 FvH4_3g11280 FvH4_3g44530 FvH4_5g09361 FvH4_5g12191 FvH4_5g12240 FvH4_7g07300 FvH4_7g18342 FvH4_7g29850 FvH4_7g29850
rosa_chinensis	RchiOBHm_Chr7g0185371
rosa_laevigata	RLG00000004918
rosa_multiflora	Rmu_sc0001761.1_g000014 Rmu_sc0008496.1_g000001
rosa_rugosa	Rorug06G0468500 Rorug06G0468600
rosa_samantha	Rh7AG074300 Rh7BG073100 Rh7DG073500
rosa_wichuraiana	Rw7G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	345
AccB7I	CCANNNNNTGG	2 cut(s)	442, 750
AccI	GTMKAC	1 cut(s)	58
AciI	CCGC	1 cut(s)	576
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	701
AdeI	CACNNNGTG	1 cut(s)	750
AfeI	AGCGCT	1 cut(s)	609
AfiI	CCNNNNNNNGG	3 cut(s)	442, 625, 750
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	7 cut(s)	169, 392, 415, 534, 550, 668, 706
AjiI	CACGTC	1 cut(s)	427
AluBI	AGCT	4 cut(s)	9, 515, 553, 711
AluI	AGCT	4 cut(s)	9, 515, 553, 711
AlwI	GGATC	1 cut(s)	235
Aor51HI	AGCGCT	1 cut(s)	609
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	465
ApoI	RAATTY	1 cut(s)	701
ArsI	GACNNNNNNTTYG	4 cut(s)	22, 54, 87, 119
AspLEI	GCGC	3 cut(s)	145, 245, 610
AspS9I	GGNCC	2 cut(s)	47, 334
AvaII	GGWCC	1 cut(s)	334
BaeGI	GKGCMC	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	345
BauI	CACGAG	1 cut(s)	748
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	2 cut(s)	29, 329
BfaI	CTAG	2 cut(s)	657, 687
BfoI	RGCGCY	2 cut(s)	246, 611
BisI	GCNGC	2 cut(s)	466, 577
BlsI	GCNGC	2 cut(s)	467, 578
Bme18I	GGWCC	1 cut(s)	334
BmgBI	CACGTC	1 cut(s)	427
BmgT120I	GGNCC	2 cut(s)	47, 334
BmiI	GGNNCC	2 cut(s)	48, 347
BmsI	GCATC	3 cut(s)	130, 605, 663
BpmI	CTGGAG	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	383
BsaJI	CCNNGG	2 cut(s)	246, 441
BsaWI	WCCGGW	1 cut(s)	509
Bsc4I	CCNNNNNNNGG	3 cut(s)	442, 625, 750
BseDI	CCNNGG	2 cut(s)	246, 441
BseGI	GGATG	1 cut(s)	620
BseLI	CCNNNNNNNGG	3 cut(s)	442, 625, 750
BseMII	CTCAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	477
BseYI	CCCAGC	1 cut(s)	208
BshFI	GGCC	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	3 cut(s)	442, 625, 750
BsmFI	GGGAC	1 cut(s)	66
BsmI	GAATGC	3 cut(s)	133, 519, 605
BsnI	GGCC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp143I	GATC	3 cut(s)	22, 193, 227
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	1 cut(s)	576
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	48, 347
BspPI	GGATC	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	246, 441
BssMI	GATC	3 cut(s)	22, 193, 227
BssSI	CACGAG	1 cut(s)	748
BssT1I	CCWWGG	2 cut(s)	246, 441
Bst2BI	CACGAG	1 cut(s)	748
Bst6I	CTCTTC	2 cut(s)	685, 732
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	517
BstDEI	CTNAG	2 cut(s)	182, 215
BstDSI	CCRYGG	1 cut(s)	441
BstEII	GGTNACC	1 cut(s)	505
BstF5I	GGATG	1 cut(s)	620
BstH2I	RGCGCY	2 cut(s)	246, 611
BstHHI	GCGC	3 cut(s)	145, 245, 610
BstKTI	GATC	3 cut(s)	25, 196, 230
BstMBI	GATC	3 cut(s)	22, 193, 227
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 383
BstPI	GGTNACC	1 cut(s)	505
BstSLI	GKGCMC	1 cut(s)	350
BstV1I	GCAGC	1 cut(s)	477
BsuRI	GGCC	1 cut(s)	49
BtgI	CCRYGG	1 cut(s)	441
BtrI	CACGTC	1 cut(s)	427
BtsCI	GGATG	1 cut(s)	620
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	517
CfoI	GCGC	3 cut(s)	145, 245, 610
Cfr13I	GGNCC	2 cut(s)	47, 334
CviAII	CATG	2 cut(s)	20, 442
CviJI	RGCY	6 cut(s)	9, 49, 515, 553, 579, 711
CviKI_1	RGCY	6 cut(s)	9, 49, 515, 553, 579, 711
DdeI	CTNAG	2 cut(s)	182, 215
DpnI	GATC	3 cut(s)	24, 195, 229
DpnII	GATC	3 cut(s)	22, 193, 227
DraIII	CACNNNGTG	1 cut(s)	750
Eam1104I	CTCTTC	2 cut(s)	685, 732
EarI	CTCTTC	2 cut(s)	685, 732
Eco130I	CCWWGG	2 cut(s)	246, 441
Eco47I	GGWCC	1 cut(s)	334
Eco47III	AGCGCT	1 cut(s)	609
Eco91I	GGTNACC	1 cut(s)	505
EcoO65I	GGTNACC	1 cut(s)	505
EcoT14I	CCWWGG	2 cut(s)	246, 441
EcoT22I	ATGCAT	1 cut(s)	605
ErhI	CCWWGG	2 cut(s)	246, 441
FaeI	CATG	2 cut(s)	23, 445
FaiI	YATR	9 cut(s)	21, 101, 162, 438, 443, 540, 596, 605, 717
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	2 cut(s)	19, 441
FblI	GTMKAC	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	466, 577
FokI	GGATG	1 cut(s)	627
Fsp4HI	GCNGC	2 cut(s)	466, 577
FspBI	CTAG	2 cut(s)	657, 687
GlaI	GCGC	3 cut(s)	144, 244, 609
GluI	GCNGC	2 cut(s)	466, 577
GsaI	CCCAGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	153
HaeII	RGCGCY	2 cut(s)	246, 611
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	1 cut(s)	510
HhaI	GCGC	3 cut(s)	145, 245, 610
Hin1II	CATG	2 cut(s)	23, 445
Hin6I	GCGC	3 cut(s)	143, 243, 608
HinP1I	GCGC	3 cut(s)	143, 243, 608
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HinfI	GANTC	1 cut(s)	629
HpaI	GTTAAC	1 cut(s)	654
HpaII	CCGG	1 cut(s)	510
Hpy166II	GTNNAC	3 cut(s)	59, 424, 654
Hpy188I	TCNGA	4 cut(s)	183, 205, 433, 592
Hpy188III	TCNNGA	2 cut(s)	93, 325
Hpy8I	GTNNAC	3 cut(s)	59, 424, 654
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	6 cut(s)	386, 465, 527, 560, 603, 676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 383
HpyF3I	CTNAG	2 cut(s)	182, 215
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	2 cut(s)	23, 445
HspAI	GCGC	3 cut(s)	143, 243, 608
KspAI	GTTAAC	1 cut(s)	654
Kzo9I	GATC	3 cut(s)	22, 193, 227
LmnI	GCTCC	4 cut(s)	111, 512, 558, 716
LpnPI	CCDG	5 cut(s)	106, 117, 222, 501, 523
Lsp1109I	GCAGC	1 cut(s)	477
LweI	GCATC	3 cut(s)	130, 605, 663
MaeI	CTAG	2 cut(s)	657, 687
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	2 cut(s)	505, 637
MalI	GATC	3 cut(s)	24, 195, 229
MboI	GATC	3 cut(s)	22, 193, 227
MboII	GAAGA	4 cut(s)	225, 702, 713, 719
MfeI	CAATTG	1 cut(s)	222
MhlI	GDGCHC	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	638
MnlI	CCTC	6 cut(s)	322, 360, 362, 407, 735, 757
Mph1103I	ATGCAT	1 cut(s)	605
MseI	TTAA	4 cut(s)	189, 572, 653, 699
MspI	CCGG	1 cut(s)	510
MunI	CAATTG	1 cut(s)	222
Mva1269I	GAATGC	3 cut(s)	133, 519, 605
MwoI	GCNNNNNNNGC	2 cut(s)	218, 383
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	3 cut(s)	22, 193, 227
NlaIII	CATG	2 cut(s)	23, 445
NlaIV	GGNNCC	2 cut(s)	48, 347
NmeAIII	GCCGAG	1 cut(s)	134
NsiI	ATGCAT	1 cut(s)	605
PctI	GAATGC	3 cut(s)	133, 519, 605
PflMI	CCANNNNNTGG	2 cut(s)	442, 750
PkrI	GCNGC	2 cut(s)	467, 578
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
PspEI	GGTNACC	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	48, 347
PspPI	GGNCC	2 cut(s)	47, 334
SaqAI	TTAA	4 cut(s)	189, 572, 653, 699
SatI	GCNGC	2 cut(s)	466, 577
Sau3AI	GATC	3 cut(s)	22, 193, 227
Sau96I	GGNCC	2 cut(s)	47, 334
SchI	GAGTC	1 cut(s)	638
SduI	GDGCHC	1 cut(s)	350
SfaNI	GCATC	3 cut(s)	130, 605, 663
SinI	GGWCC	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SsiI	CCGC	1 cut(s)	576
SspMI	CTAG	2 cut(s)	657, 687
StyI	CCWWGG	2 cut(s)	246, 441
TaiI	ACGT	1 cut(s)	429
TauI	GCSGC	1 cut(s)	579
Tru1I	TTAA	4 cut(s)	189, 572, 653, 699
Tru9I	TTAA	4 cut(s)	189, 572, 653, 699
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	1 cut(s)	465
TspRI	CASTG	1 cut(s)	364
Van91I	CCANNNNNTGG	2 cut(s)	442, 750
VpaK11BI	GGWCC	1 cut(s)	334
XapI	RAATTY	1 cut(s)	701
XcmI	CCANNNNNNNNNTGG	2 cut(s)	244, 328
XmiI	GTMKAC	1 cut(s)	58
XspI	CTAG	2 cut(s)	657, 687
Zsp2I	ATGCAT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.