Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008126

Physical Location & Seq

Genomic Coordinates Reverse (-)

6621339 .. 6623941

Gene Structure 2603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11250.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCTATAGACGCCAAAAGGAGGTCAGGGTATATTAATTCCATGTTGAACGACGATTTACTTGCCCAAATCCTTAACATGGTCGACCAGAAAGAAGATAGAAAATCGTTCTCGGAGGTGTGCAAGCAATGGTTAAGAGTGGAACGTCTAAGCCGAACATCACTTCGGGTTCGCGGCGGACCCATGTTCCCACTGGATCTACTGACTAAATTTCCCAACTTGGTCGATTTCAGAACAACACGGGAGCTTACCAAAAAAAGAAAAAGGCAGAACAAAAAATCATGGTATTATCCACCCACCGACCCCCGACTCGAATTCATAGCCAAAACATATCCCAAGCTCAAGACCTTCATGGTTTACTCCGTTATAACTTCATTTGTCCAAGGTGATGGTCATTTGGGGACCAAAGGTCTACAAGCATTGGGAATTGGGTGTCCCAATTTGTCCACGCTTATGTTTCGGGGGTGCAAAGTGGTAGGGAATGCTGGAGTTGATGCACTTTTTCAATCAGCACATAACTTGAAGTCTTTGCATTTGAAGGAAAATCATCTAATCTCTGATCGTGCATTTAAAGCAATTGGGTCATCTTCCATAAGCACATTGGAGTTACAATGCTGTCCAAATGTTACTGATATGGGATTGGGATTTCTGGCAAATGGGTCTACCTCTAAAACCCTCAAGAAATTGATCCTTAAGCGTTGCGAAGGAATTACCGATACTGGGATGCAGCATCTGGTCAACATGCGTAGCTTAGAGCACCTGGAATTGGCATGTTTGAAACATGTCACTGATATTGGAGGTACGGCAATCTCGACAATTCAAACCCTCAGGGAATTGAAGTTGTGTAAACTTTGGAAGTTGTCAGAGCGTACAGTTGTTGCTCTTGCTGAGAATTGCCGCAACTTGGAAGTACTTGCTTTGTATCGTATATGGTTACATGAACCTGTAACCGGAGCTAGCATACATTCATTTTCAAGACATAAATGCTTGAAATACCTTTCATTGTATGGTTTCAGCAACTTAGATCAGTCTGATGTGGAAATAGTGCTTGGATGCCCCTCATTGGAGTCTTTGGTGTTAGACAAGTCATTAACTGGTAATTTCAGATTGATGCATGGGAACAGTGCTAGAAGGGTGGTCAAATTTGAATCCTTTTGTGATTCCTTTCCGCAGTTCATGCCCACTGTGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

398

Amino Acids

44.81

Weight (kDa)

9.48

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	16 - 53	7.4e-10	F-box
DUF7885	PF25372	140 - 270	4.1e-09	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008126)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37241 FvH4_3g00150 FvH4_3g11250 FvH4_3g11250 FvH4_3g11250 FvH4_3g11280 FvH4_3g44530 FvH4_5g09361 FvH4_5g12191 FvH4_5g12240 FvH4_7g07300 FvH4_7g18342 FvH4_7g29850 FvH4_7g29850
rosa_chinensis	RchiOBHm_Chr7g0185371
rosa_laevigata	RLG00000004918
rosa_multiflora	Rmu_sc0001761.1_g000014 Rmu_sc0008496.1_g000001
rosa_rugosa	Rorug06G0468500 Rorug06G0468600
rosa_samantha	Rh7AG074300 Rh7BG073100 Rh7DG073500
rosa_wichuraiana	Rw7G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AccB7I	CCANNNNNTGG	1 cut(s)	1188
AccI	GTMKAC	3 cut(s)	84, 412, 662
AccII	CGCG	1 cut(s)	174
AciI	CCGC	4 cut(s)	174, 177, 898, 1169
AclWI	GGATC	2 cut(s)	204, 682
AcsI	RAATTY	3 cut(s)	209, 314, 1142
AcyI	GRCGYC	1 cut(s)	12
AdeI	CACNNNGTG	1 cut(s)	1188
AfaI	GTAC	3 cut(s)	802, 871, 912
AfiI	CCNNNNNNNGG	8 cut(s)	21, 79, 720, 766, 904, 950, 1063, 1188
AflII	CTTAAG	1 cut(s)	692
AflIII	ACRYGT	1 cut(s)	781
AhdI	GACNNNNNGTC	1 cut(s)	408
AjnI	CCWGG	1 cut(s)	759
AjuI	GAANNNNNNNTTGG	2 cut(s)	1032, 1064
AluBI	AGCT	4 cut(s)	247, 340, 750, 956
AluI	AGCT	4 cut(s)	247, 340, 750, 956
Alw21I	GWGCWC	1 cut(s)	759
AlwI	GGATC	2 cut(s)	204, 682
AlwNI	CAGNNNCTG	1 cut(s)	733
ApeKI	GCWGC	1 cut(s)	727
ApoI	RAATTY	3 cut(s)	209, 314, 1142
AseI	ATTAAT	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	179, 402
AsuHPI	GGTGA	1 cut(s)	398
AsuNHI	GCTAGC	1 cut(s)	956
AvaII	GGWCC	2 cut(s)	179, 402
AxyI	CCTNAGG	1 cut(s)	827
Bbv12I	GWGCWC	1 cut(s)	759
BbvI	GCAGC	1 cut(s)	739
BccI	CCATC	1 cut(s)	383
BceAI	ACGGC	1 cut(s)	819
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciT130I	CCWGG	1 cut(s)	761
BfaI	CTAG	2 cut(s)	957, 1128
BfmI	CTRYAG	1 cut(s)	6
BfrI	CTTAAG	1 cut(s)	692
BisI	GCNGC	3 cut(s)	175, 728, 898
BlsI	GCNGC	3 cut(s)	176, 729, 899
BmcAI	AGTACT	1 cut(s)	912
Bme1390I	CCNGG	1 cut(s)	761
Bme18I	GGWCC	2 cut(s)	179, 402
BmeRI	GACNNNNNGTC	1 cut(s)	408
BmgT120I	GGNCC	2 cut(s)	179, 402
BmiI	GGNNCC	2 cut(s)	181, 403
BmrFI	CCNGG	1 cut(s)	761
BmrI	ACTGGG	1 cut(s)	729
BmsI	GCATC	5 cut(s)	484, 714, 739, 1043, 1101
BmtI	GCTAGC	1 cut(s)	960
BmuI	ACTGGG	1 cut(s)	729
BpmI	CTGGAG	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	326, 662
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	382
BsaWI	WCCGGW	1 cut(s)	950
Bsc4I	CCNNNNNNNGG	8 cut(s)	21, 79, 720, 766, 904, 950, 1063, 1188
Bse1I	ACTGG	3 cut(s)	198, 724, 1099
Bse21I	CCTNAGG	1 cut(s)	827
Bse3DI	GCAATG	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	761
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	2 cut(s)	729, 1058
BseLI	CCNNNNNNNGG	8 cut(s)	21, 79, 720, 766, 904, 950, 1063, 1188
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	2 cut(s)	841, 879
BseNI	ACTGG	3 cut(s)	198, 724, 1099
BseXI	GCAGC	1 cut(s)	739
Bsh1236I	CGCG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	759
BsiSI	CCGG	1 cut(s)	951
BslFI	GGGAC	2 cut(s)	415, 420
BslI	CCNNNNNNNGG	8 cut(s)	21, 79, 720, 766, 904, 950, 1063, 1188
BsmFI	GGGAC	2 cut(s)	415, 420
BsmI	GAATGC	1 cut(s)	487
Bsp1286I	GDGCHC	1 cut(s)	759
Bsp143I	GATC	4 cut(s)	196, 559, 687, 1024
BspACI	CCGC	4 cut(s)	174, 177, 898, 1169
BspCNI	CTCAG	2 cut(s)	840, 880
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	181, 403
BspOI	GCTAGC	1 cut(s)	960
BspPI	GGATC	2 cut(s)	204, 682
BspTI	CTTAAG	1 cut(s)	692
BsrDI	GCAATG	1 cut(s)	134
BsrI	ACTGG	3 cut(s)	198, 724, 1099
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	4 cut(s)	196, 559, 687, 1024
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	761
Bst4CI	ACNGT	3 cut(s)	874, 1124, 1186
BstACI	GRCGYC	1 cut(s)	12
BstAFI	CTTAAG	1 cut(s)	692
BstAPI	GCANNNNNTGC	1 cut(s)	1177
BstC8I	GCNNGC	2 cut(s)	125, 958
BstDEI	CTNAG	5 cut(s)	149, 751, 827, 888, 1021
BstF5I	GGATG	2 cut(s)	729, 1058
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	4 cut(s)	199, 562, 690, 1027
BstMBI	GATC	4 cut(s)	196, 559, 687, 1024
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 572, 1177
BstNI	CCWGG	1 cut(s)	761
BstNSI	RCATGY	3 cut(s)	745, 774, 785
BstSCI	CCNGG	1 cut(s)	759
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	739
BstX2I	RGATCY	1 cut(s)	196
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	196
Bsu36I	CCTNAGG	1 cut(s)	827
BtsCI	GGATG	2 cut(s)	729, 1058
BtsIMutI	CAGTG	4 cut(s)	191, 786, 1129, 1182
Cac8I	GCNNGC	2 cut(s)	125, 958
CaiI	CAGNNNCTG	1 cut(s)	733
Cfr13I	GGNCC	2 cut(s)	179, 402
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	3 cut(s)	801, 870, 911
CviJI	RGCY	7 cut(s)	5, 153, 247, 323, 340, 750, 956
CviKI_1	RGCY	7 cut(s)	5, 153, 247, 323, 340, 750, 956
CviQI	GTAC	3 cut(s)	801, 870, 911
DdeI	CTNAG	5 cut(s)	149, 751, 827, 888, 1021
DpnI	GATC	4 cut(s)	198, 561, 689, 1026
DpnII	GATC	4 cut(s)	196, 559, 687, 1024
DraI	TTTAAA	1 cut(s)	571
DraIII	CACNNNGTG	1 cut(s)	1188
DriI	GACNNNNNGTC	1 cut(s)	408
Eam1105I	GACNNNNNGTC	1 cut(s)	408
EciI	GGCGGA	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	382
Eco47I	GGWCC	2 cut(s)	179, 402
Eco81I	CCTNAGG	1 cut(s)	827
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	759
EcoT14I	CCWWGG	1 cut(s)	382
EcoT22I	ATGCAT	1 cut(s)	1116
ErhI	CCWWGG	1 cut(s)	382
FaqI	GGGAC	2 cut(s)	415, 420
FblI	GTMKAC	3 cut(s)	84, 412, 662
Fnu4HI	GCNGC	3 cut(s)	175, 728, 898
FokI	GGATG	2 cut(s)	736, 1065
Fsp4HI	GCNGC	3 cut(s)	175, 728, 898
FspBI	CTAG	2 cut(s)	957, 1128
GluI	GCNGC	3 cut(s)	175, 728, 898
GsuI	CTGGAG	1 cut(s)	507
HapII	CCGG	1 cut(s)	951
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	12
HincII	GTYRAC	2 cut(s)	85, 739
HindII	GTYRAC	2 cut(s)	85, 739
HinfI	GANTC	4 cut(s)	309, 1067, 1148, 1160
HpaII	CCGG	1 cut(s)	951
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	7 cut(s)	85, 358, 413, 447, 663, 739, 848
Hpy188I	TCNGA	6 cut(s)	115, 233, 559, 865, 1033, 1106
Hpy188III	TCNNGA	4 cut(s)	343, 679, 811, 975
Hpy8I	GTNNAC	7 cut(s)	85, 358, 413, 447, 663, 739, 848
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	358, 532, 698, 1125
HpyCH4III	ACNGT	3 cut(s)	874, 1124, 1186
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	7 cut(s)	123, 468, 497, 532, 566, 727, 1114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 572, 1177
HpyF3I	CTNAG	5 cut(s)	149, 751, 827, 888, 1021
HpySE526I	ACGT	1 cut(s)	145
Hsp92I	GRCGYC	1 cut(s)	12
Kzo9I	GATC	4 cut(s)	196, 559, 687, 1024
LmnI	GCTCC	2 cut(s)	244, 953
Lsp1109I	GCAGC	1 cut(s)	739
LweI	GCATC	5 cut(s)	484, 714, 739, 1043, 1101
MaeI	CTAG	2 cut(s)	957, 1128
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	5 cut(s)	606, 625, 784, 933, 946
MalI	GATC	4 cut(s)	198, 561, 689, 1026
MboI	GATC	4 cut(s)	196, 559, 687, 1024
MboII	GAAGA	2 cut(s)	107, 579
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	759
MlyI	GAGTC	2 cut(s)	303, 1076
MnlI	CCTC	7 cut(s)	15, 109, 676, 686, 791, 836, 1069
Mph1103I	ATGCAT	1 cut(s)	1116
MseI	TTAA	6 cut(s)	36, 75, 134, 570, 693, 1091
MslI	CAYNNNNRTG	1 cut(s)	452
MspCI	CTTAAG	1 cut(s)	692
MspI	CCGG	1 cut(s)	951
MspR9I	CCNGG	1 cut(s)	761
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	761
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	11, 572, 1177
NdeII	GATC	4 cut(s)	196, 559, 687, 1024
NheI	GCTAGC	1 cut(s)	956
NlaIV	GGNNCC	2 cut(s)	181, 403
NmuCI	GTSAC	1 cut(s)	784
NsiI	ATGCAT	1 cut(s)	1116
NspI	RCATGY	3 cut(s)	745, 774, 785
PciI	ACATGT	1 cut(s)	781
PcsI	WCGNNNNNNNCGW	2 cut(s)	151, 809
PctI	GAATGC	1 cut(s)	487
PfeI	GAWTC	2 cut(s)	1148, 1160
PflMI	CCANNNNNTGG	1 cut(s)	1188
PkrI	GCNGC	3 cut(s)	176, 729, 899
PleI	GAGTC	2 cut(s)	303, 1075
PpsI	GAGTC	2 cut(s)	303, 1075
PscI	ACATGT	1 cut(s)	781
PshBI	ATTAAT	1 cut(s)	36
PsiI	TTATAA	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	759
PspGI	CCWGG	1 cut(s)	759
PspN4I	GGNNCC	2 cut(s)	181, 403
PspPI	GGNCC	2 cut(s)	179, 402
PstNI	CAGNNNCTG	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	3 cut(s)	802, 871, 912
RsaNI	GTAC	3 cut(s)	801, 870, 911
RseI	CAYNNNNRTG	1 cut(s)	452
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	6 cut(s)	36, 75, 134, 570, 693, 1091
SatI	GCNGC	3 cut(s)	175, 728, 898
Sau3AI	GATC	4 cut(s)	196, 559, 687, 1024
Sau96I	GGNCC	2 cut(s)	179, 402
ScaI	AGTACT	1 cut(s)	912
SchI	GAGTC	2 cut(s)	303, 1076
ScrFI	CCNGG	1 cut(s)	761
SduI	GDGCHC	1 cut(s)	759
SfaNI	GCATC	5 cut(s)	484, 714, 739, 1043, 1101
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	2 cut(s)	179, 402
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	3 cut(s)	341, 677, 692
SmoI	CTYRAG	3 cut(s)	341, 677, 692
SsiI	CCGC	4 cut(s)	174, 177, 898, 1169
SspMI	CTAG	2 cut(s)	957, 1128
StyD4I	CCNGG	1 cut(s)	759
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	3 cut(s)	874, 1124, 1186
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	4 cut(s)	84, 225, 312, 812
TatI	WGTACW	1 cut(s)	910
TauI	GCSGC	2 cut(s)	177, 900
TfiI	GAWTC	2 cut(s)	1148, 1160
Tru1I	TTAA	6 cut(s)	36, 75, 134, 570, 693, 1091
Tru9I	TTAA	6 cut(s)	36, 75, 134, 570, 693, 1091
TscAI	CASTG	4 cut(s)	198, 793, 1129, 1189
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	1 cut(s)	727
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	7 cut(s)	307, 340, 363, 954, 957, 990, 1165
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	4 cut(s)	198, 793, 1129, 1189
Van91I	CCANNNNNTGG	1 cut(s)	1188
Vha464I	CTTAAG	1 cut(s)	692
VpaK11BI	GGWCC	2 cut(s)	179, 402
VspI	ATTAAT	1 cut(s)	36
XapI	RAATTY	3 cut(s)	209, 314, 1142
XceI	RCATGY	3 cut(s)	745, 774, 785
XcmI	CCANNNNNNNNNTGG	2 cut(s)	190, 598
XmiI	GTMKAC	3 cut(s)	84, 412, 662
XspI	CTAG	2 cut(s)	957, 1128
ZrmI	AGTACT	1 cut(s)	912
Zsp2I	ATGCAT	1 cut(s)	1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.