Rh7BG073100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008126
Physical Location & Seq
Reverse (-)
4937735 .. 4938372
638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG073100.1

Sequence Viewer

Length: 474 bp
ATGGTTATACGTGCCAAAAAGAAATCAGGGAGCATTAGTTCCATGCTGAACGACCATTTACTTTTCCTAATCCTTAACAAAATCAAGAACAAACGAGATAGAGAATCGTTCTCGTTGGTCTGCAAGCAGTGGTTAAGAGTGGAACGTCTGAGCCGAACATCACTTTGGGTTCGCCAATCCGTACCCCCGGGTCTAATGACTAGATTCCCAAACTTAGTCCATTTCAGAACACGTGAGCTTACCACGAGAAGGAAAAAGAGAAATAAAAGAGCATGGAAGTGTCAGCAGACCGATACCCACCTCGAGGTCATAGCCAAAACGTGTCACGAACTCGAGACCTTCATGGTAAGCTGTGAGAAGCATGATCTACAAAATGATGGTCATTTGGGGCCAAAAGGTCTACATGCATTGGGAAATGGGTGTCCCAAATTATCCAGACTTATGTTTTGCGGGAGCAAGGTGGTAGGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

157

Amino Acids

18.18

Weight (kDa)

10.45

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 16 - 53 6.2e-11 F-box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 302
AccI GTMKAC 1 cut(s) 400
AciI CCGC 1 cut(s) 450
AcvI CACGTG 1 cut(s) 233
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 2 cut(s) 249, 304
AflIII ACRYGT 2 cut(s) 230, 320
AjuI GAANNNNNNNTTGG 2 cut(s) 148, 180
AloI GAACNNNNNNTCC 2 cut(s) 22, 54
AluBI AGCT 2 cut(s) 238, 351
AluI AGCT 2 cut(s) 238, 351
Alw26I GTCTC 1 cut(s) 329
Ama87I CYCGRG 3 cut(s) 187, 302, 332
AoxI GGCC 1 cut(s) 389
ArsI GACNNNNNNTTYG 4 cut(s) 364, 396, 429, 461
AspS9I GGNCC 1 cut(s) 389
AsuC2I CCSGG 2 cut(s) 188, 189
AvaI CYCGRG 3 cut(s) 187, 302, 332
BauI CACGAG 1 cut(s) 244
BbrPI CACGTG 1 cut(s) 233
BccI CCATC 1 cut(s) 371
BcnI CCSGG 2 cut(s) 188, 189
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 1 cut(s) 201
Bme1390I CCNGG 2 cut(s) 188, 189
BmeT110I CYCGRG 3 cut(s) 187, 302, 332
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 2 cut(s) 188, 189
BpuMI CCSGG 2 cut(s) 188, 189
BsaAI YACGTR 2 cut(s) 11, 233
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 2 cut(s) 186, 187
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 304
BseDI CCNNGG 2 cut(s) 186, 187
BseLI CCNNNNNNNGG 2 cut(s) 249, 304
BseMII CTCAG 1 cut(s) 140
BshFI GGCC 1 cut(s) 391
BsiHKCI CYCGRG 3 cut(s) 187, 302, 332
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 2 cut(s) 249, 304
BsmAI GTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 408
BsnI GGCC 1 cut(s) 391
Bso31I GGTCTC 1 cut(s) 329
BsoBI CYCGRG 3 cut(s) 187, 302, 332
Bsp143I GATC 1 cut(s) 364
BspACI CCGC 1 cut(s) 450
BspANI GGCC 1 cut(s) 391
BspCNI CTCAG 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 390
BspTNI GGTCTC 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 186, 187
BssMI GATC 1 cut(s) 364
BssSI CACGAG 1 cut(s) 244
Bst2BI CACGAG 1 cut(s) 244
BstBAI YACGTR 2 cut(s) 11, 233
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 149, 214
BstKTI GATC 1 cut(s) 367
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 1 cut(s) 364
BstNSI RCATGY 1 cut(s) 407
BstSCI CCNGG 2 cut(s) 186, 187
BsuRI GGCC 1 cut(s) 391
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 389
Cfr9I CCCGGG 1 cut(s) 187
Csp6I GTAC 1 cut(s) 182
CviAII CATG 5 cut(s) 43, 273, 343, 362, 404
CviJI RGCY 5 cut(s) 153, 238, 314, 351, 391
CviKI_1 RGCY 5 cut(s) 153, 238, 314, 351, 391
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 2 cut(s) 149, 214
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
Eco31I GGTCTC 1 cut(s) 329
Eco72I CACGTG 1 cut(s) 233
Eco88I CYCGRG 3 cut(s) 187, 302, 332
EcoT22I ATGCAT 1 cut(s) 409
FaeI CATG 5 cut(s) 46, 276, 346, 365, 407
FaiI YATR 8 cut(s) 8, 44, 274, 311, 344, 363, 405, 443
FaqI GGGAC 1 cut(s) 408
FatI CATG 5 cut(s) 42, 272, 342, 361, 403
FauI CCCGC 1 cut(s) 443
FblI GTMKAC 1 cut(s) 400
FspBI CTAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 391
HapII CCGG 1 cut(s) 188
Hin1II CATG 5 cut(s) 46, 276, 346, 365, 407
HinfI GANTC 2 cut(s) 104, 204
HpaII CCGG 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 2 cut(s) 150, 227
Hpy188III TCNNGA 4 cut(s) 85, 326, 334, 435
Hpy8I GTNNAC 1 cut(s) 401
HpyAV CCTTC 2 cut(s) 243, 349
HpyCH4IV ACGT 4 cut(s) 10, 145, 232, 320
HpyCH4V TGCA 2 cut(s) 123, 407
HpyF3I CTNAG 2 cut(s) 149, 214
HpySE526I ACGT 4 cut(s) 10, 145, 232, 320
Hsp92II CATG 5 cut(s) 46, 276, 346, 365, 407
Kzo9I GATC 1 cut(s) 364
LmnI GCTCC 2 cut(s) 30, 453
LpnPI CCDG 3 cut(s) 12, 201, 448
MaeI CTAG 1 cut(s) 201
MaeII ACGT 4 cut(s) 10, 145, 232, 320
MaeIII GTNAC 1 cut(s) 323
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MluCI AATT 2 cut(s) 428, 469
MnlI CCTC 2 cut(s) 298, 311
Mph1103I ATGCAT 1 cut(s) 409
MseI TTAA 3 cut(s) 75, 134, 472
MslI CAYNNNNRTG 1 cut(s) 277
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 188, 189
NciI CCSGG 2 cut(s) 188, 189
NdeII GATC 1 cut(s) 364
NlaIII CATG 5 cut(s) 46, 276, 346, 365, 407
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 323
NsiI ATGCAT 1 cut(s) 409
NspI RCATGY 1 cut(s) 407
PaeR7I CTCGAG 2 cut(s) 302, 332
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PfeI GAWTC 2 cut(s) 104, 204
PmaCI CACGTG 1 cut(s) 233
PmlI CACGTG 1 cut(s) 233
Ppu21I YACGTR 2 cut(s) 11, 233
PspCI CACGTG 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 390
PspPI GGNCC 1 cut(s) 389
PspXI VCTCGAGB 1 cut(s) 302
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 277
SaqAI TTAA 3 cut(s) 75, 134, 472
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 1 cut(s) 389
ScrFI CCNGG 2 cut(s) 188, 189
Sfr274I CTCGAG 2 cut(s) 302, 332
SlaI CTCGAG 2 cut(s) 302, 332
SmaI CCCGGG 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 277
SmlI CTYRAG 2 cut(s) 302, 332
SmoI CTYRAG 2 cut(s) 302, 332
Sse9I AATT 2 cut(s) 428, 469
SsiI CCGC 1 cut(s) 450
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 186, 187
TaiI ACGT 4 cut(s) 13, 148, 235, 323
TaqI TCGA 2 cut(s) 303, 333
TaqII GACCGA 1 cut(s) 305
TasI AATT 2 cut(s) 428, 469
TfiI GAWTC 2 cut(s) 104, 204
Tru1I TTAA 3 cut(s) 75, 134, 472
Tru9I TTAA 3 cut(s) 75, 134, 472
TscAI CASTG 1 cut(s) 134
TseFI GTSAC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 331
TspGWI ACGGA 1 cut(s) 169
TspMI CCCGGG 1 cut(s) 187
TspRI CASTG 1 cut(s) 134
XceI RCATGY 1 cut(s) 407
XhoI CTCGAG 2 cut(s) 302, 332
XmaI CCCGGG 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 400
XspI CTAG 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.