Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008126

Physical Location & Seq

Genomic Coordinates Reverse (-)

21858735 .. 21861598

Gene Structure 2864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGGTCGAGGGTTTACTTATTCCATGCTCAGCGACGATTTAGTTGCCCAAATCCTGAACAAGATAAGCGAATCAGAAGACATAAGATCATTCTCGGAGGTGTGCAAGCAGTGGTTAAGAGTACAACGTCTAAACCAAACATCGCTTCGGGTCGACGTCGGCTTCCCCCAGATTTTACTTACCAGATTCCCGAACCTGCAAGAGTTGAGAGTATGGGAGGTTACAAAAGAAAAGCCCAGTAAAGAAGCGTGGTATCCAACCGAGACGGGACTCGAAATCGTAGCGAAATCGTGTCCTAATCTTGAGACGTTGTTGGTTTCTTCCGAGTATTCTGTTTTGGGGTCGAAAGGTTTAAGGGCATTGGGAAATGGGTGTCCCAAATTGTCCACTGTTATGTTTGACGAGATGGTGGTAGGGAATGAAGGACTTGTTGCGCTTTTTCAGGCTGCGCATAACTTGAAGGGTCTGCATTTGTCTAGTAATGAGCTAGTTTCTGACTACGCCTGTAGAGCAATCGGGTCATCTTGCATTACCACATTGGAGTTGAAAGATTGTCCTTATGTTACTACTGATGTGGGATTGAGATTCGTGGCGAATGGGACTACCTCCGGGACCCTCAAGAAATTGATCCTTGATGGTTGCCAGGGCATCACTGATAATGGGATAGAGTATTTGGTCAAAATGCGTTGCTTGGAGCACCTGGAACTGACCAACTTGAGTGAGGGAGTCACTGATGTAGGAGGTGTGGCAATCTCTACAATTCAAACCCTCAAGGAACTGAAATTGAGCGAGGCTTTGGGGATGTCAGACCGTACAGTTGTTGCTCTTGCTGAGAATTGCCACAACTTGGAAGCATTTGCATTGTGTCTATGGTTTCATGGAGATGTAAGCGGAGCTAGTATTTGTGCATTTTCAGGTCATAAATGCTTGAAACACCTTGCGTTGTTTGGTGATAATATACACATGTCTGATGTGGAAGTGGAACGAATAGTGCTTGGATGCCCCTCATTGGAGTCTTTGGTGTTAGATGATTCGGTGGTTTGGAACTTCGGATCGATGCAGGACAGAGCTAGGAGAGTGATCAAGTTTGGATCCTACGATAGACCCCTTCCCCATTTCACGGGCACTACATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

379

Amino Acids

41.62

Weight (kDa)

5.45

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7885	PF25372	65 - 250	3.9e-10	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008126)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37241 FvH4_3g00150 FvH4_3g11250 FvH4_3g11250 FvH4_3g11250 FvH4_3g11280 FvH4_3g44530 FvH4_5g09361 FvH4_5g12191 FvH4_5g12240 FvH4_7g07300 FvH4_7g18342 FvH4_7g29850 FvH4_7g29850
rosa_chinensis	RchiOBHm_Chr7g0185371
rosa_laevigata	RLG00000004918
rosa_multiflora	Rmu_sc0001761.1_g000014 Rmu_sc0008496.1_g000001
rosa_rugosa	Rorug06G0468500 Rorug06G0468600
rosa_samantha	Rh7AG074300 Rh7BG073100 Rh7DG073500
rosa_wichuraiana	Rw7G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	159
Acc16I	TGCGCA	1 cut(s)	450
Acc36I	ACCTGC	1 cut(s)	204
AccB7I	CCANNNNNTGG	1 cut(s)	847
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	1 cut(s)	891
AclWI	GGATC	4 cut(s)	622, 1060, 1086, 1099
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	123, 814
AfiI	CCNNNNNNNGG	3 cut(s)	847, 1009, 1120
AflIII	ACRYGT	1 cut(s)	963
AgsI	TTSAA	4 cut(s)	460, 547, 764, 931
AjnI	CCWGG	2 cut(s)	642, 699
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	3 cut(s)	487, 896, 1070
AluI	AGCT	3 cut(s)	487, 896, 1070
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	2 cut(s)	257, 299
AlwI	GGATC	4 cut(s)	622, 1060, 1086, 1099
ApeKI	GCWGC	1 cut(s)	446
AspLEI	GCGC	2 cut(s)	436, 451
AspS9I	GGNCC	1 cut(s)	612
AsuC2I	CCSGG	1 cut(s)	610
AsuHPI	GGTGA	1 cut(s)	962
AvaII	GGWCC	1 cut(s)	612
BaeGI	GKGCMC	1 cut(s)	1127
BamHI	GGATCC	1 cut(s)	1091
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	2 cut(s)	400, 629
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	2 cut(s)	644, 701
BciVI	GTATCC	1 cut(s)	264
BclI	TGATCA	1 cut(s)	1080
BcnI	CCSGG	1 cut(s)	610
BcoDI	GTCTC	2 cut(s)	257, 299
BfaI	CTAG	4 cut(s)	477, 488, 897, 1071
BfmI	CTRYAG	1 cut(s)	505
BfuAI	ACCTGC	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	264
BisI	GCNGC	1 cut(s)	447
BlpI	GCTNAGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	3 cut(s)	610, 644, 701
Bme18I	GGWCC	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	612
BmiI	GGNNCC	3 cut(s)	613, 614, 1093
BmrFI	CCNGG	3 cut(s)	610, 644, 701
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	3 cut(s)	657, 989, 1047
BmuI	ACTGGG	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	84
Bpu1102I	GCTNAGC	1 cut(s)	29
BpuEI	CTTGAG	4 cut(s)	323, 602, 736, 755
BpuMI	CCSGG	1 cut(s)	610
Bsa29I	ATCGAT	1 cut(s)	1055
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	3 cut(s)	847, 1009, 1120
Bse1I	ACTGG	1 cut(s)	237
BseBI	CCWGG	2 cut(s)	644, 701
BseCI	ATCGAT	1 cut(s)	1055
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	2 cut(s)	807, 1004
BseLI	CCNNNNNNNGG	3 cut(s)	847, 1009, 1120
BseMII	CTCAG	2 cut(s)	43, 822
BseNI	ACTGG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	1127
BseXI	GCAGC	1 cut(s)	433
BshVI	ATCGAT	1 cut(s)	1055
BsiHKAI	GWGCWC	1 cut(s)	699
BsiSI	CCGG	1 cut(s)	609
BslFI	GGGAC	4 cut(s)	282, 360, 613, 625
BslI	CCNNNNNNNGG	3 cut(s)	847, 1009, 1120
BsmAI	GTCTC	2 cut(s)	257, 299
BsmBI	CGTCTC	2 cut(s)	257, 299
BsmFI	GGGAC	4 cut(s)	282, 360, 613, 625
Bsp1286I	GDGCHC	2 cut(s)	699, 1127
Bsp143I	GATC	5 cut(s)	86, 627, 1052, 1080, 1091
Bsp1720I	GCTNAGC	1 cut(s)	29
BspACI	CCGC	1 cut(s)	891
BspCNI	CTCAG	2 cut(s)	42, 823
BspDI	ATCGAT	1 cut(s)	1055
BspLI	GGNNCC	3 cut(s)	613, 614, 1093
BspMI	ACCTGC	1 cut(s)	204
BspPI	GGATC	4 cut(s)	622, 1060, 1086, 1099
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	5 cut(s)	86, 627, 1052, 1080, 1091
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	644, 701
Bst4CI	ACNGT	3 cut(s)	391, 812, 817
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	2 cut(s)	29, 831
BstF5I	GGATG	2 cut(s)	807, 1004
BstHHI	GCGC	2 cut(s)	436, 451
BstKTI	GATC	5 cut(s)	89, 630, 1055, 1083, 1094
BstMAI	GTCTC	2 cut(s)	257, 299
BstMBI	GATC	5 cut(s)	86, 627, 1052, 1080, 1091
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	2 cut(s)	644, 701
BstNSI	RCATGY	1 cut(s)	967
BstSCI	CCNGG	3 cut(s)	608, 642, 699
BstSFI	CTRYAG	1 cut(s)	505
BstSLI	GKGCMC	1 cut(s)	1127
BstV1I	GCAGC	1 cut(s)	433
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	1091
BstYI	RGATCY	1 cut(s)	1091
Bsu15I	ATCGAT	1 cut(s)	1055
BsuI	GTATCC	1 cut(s)	264
BsuTUI	ATCGAT	1 cut(s)	1055
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	807, 1004
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	4 cut(s)	116, 387, 651, 729
BveI	ACCTGC	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	107
CfoI	GCGC	2 cut(s)	436, 451
Cfr13I	GGNCC	1 cut(s)	612
ClaI	ATCGAT	1 cut(s)	1055
Csp6I	GTAC	2 cut(s)	122, 813
CviAII	CATG	4 cut(s)	25, 878, 964, 1131
CviJI	RGCY	7 cut(s)	162, 235, 446, 487, 794, 896, 1070
CviKI_1	RGCY	7 cut(s)	162, 235, 446, 487, 794, 896, 1070
CviQI	GTAC	2 cut(s)	122, 813
DdeI	CTNAG	2 cut(s)	29, 831
DpnI	GATC	5 cut(s)	88, 629, 1054, 1082, 1093
DpnII	GATC	5 cut(s)	86, 627, 1052, 1080, 1091
Eco47I	GGWCC	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	612
EcoRII	CCWGG	2 cut(s)	642, 699
Esp3I	CGTCTC	2 cut(s)	257, 299
FaeI	CATG	4 cut(s)	28, 881, 967, 1134
FaqI	GGGAC	4 cut(s)	282, 360, 613, 625
FatI	CATG	4 cut(s)	24, 877, 963, 1130
FbaI	TGATCA	1 cut(s)	1080
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	2 cut(s)	814, 1011
Fsp4HI	GCNGC	1 cut(s)	447
FspBI	CTAG	4 cut(s)	477, 488, 897, 1071
FspI	TGCGCA	1 cut(s)	450
GlaI	GCGC	2 cut(s)	435, 450
GluI	GCNGC	1 cut(s)	447
HapII	CCGG	1 cut(s)	609
HhaI	GCGC	2 cut(s)	436, 451
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	4 cut(s)	28, 881, 967, 1134
Hin6I	GCGC	2 cut(s)	434, 449
HinP1I	GCGC	2 cut(s)	434, 449
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	7 cut(s)	71, 186, 270, 585, 726, 1013, 1031
HpaII	CCGG	1 cut(s)	609
HphI	GGTGA	1 cut(s)	962
Hpy166II	GTNNAC	3 cut(s)	15, 154, 387
Hpy188I	TCNGA	7 cut(s)	76, 97, 325, 496, 808, 970, 1052
Hpy188III	TCNNGA	4 cut(s)	55, 190, 302, 619
Hpy8I	GTNNAC	3 cut(s)	15, 154, 387
Hpy99I	CGWCG	3 cut(s)	38, 158, 161
HpyAV	CCTTC	3 cut(s)	416, 454, 1118
HpyCH4III	ACNGT	3 cut(s)	391, 812, 817
HpyCH4IV	ACGT	3 cut(s)	127, 156, 308
HpyCH4V	TGCA	7 cut(s)	105, 199, 469, 528, 860, 908, 1060
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	2 cut(s)	29, 831
HpySE526I	ACGT	3 cut(s)	127, 156, 308
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	4 cut(s)	28, 881, 967, 1134
HspAI	GCGC	2 cut(s)	434, 449
KflI	GGGWCCC	1 cut(s)	612
Ksp22I	TGATCA	1 cut(s)	1080
Kzo9I	GATC	5 cut(s)	86, 627, 1052, 1080, 1091
LmnI	GCTCC	2 cut(s)	694, 893
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	3 cut(s)	657, 989, 1047
MaeI	CTAG	4 cut(s)	477, 488, 897, 1071
MaeII	ACGT	3 cut(s)	127, 156, 308
MaeIII	GTNAC	3 cut(s)	220, 562, 727
MalI	GATC	5 cut(s)	88, 629, 1054, 1082, 1093
MboI	GATC	5 cut(s)	86, 627, 1052, 1080, 1091
MboII	GAAGA	2 cut(s)	89, 312
MflI	RGATCY	1 cut(s)	1091
MhlI	GDGCHC	2 cut(s)	699, 1127
MluCI	AATT	5 cut(s)	380, 623, 759, 782, 835
MlyI	GAGTC	3 cut(s)	264, 735, 1022
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	9 cut(s)	91, 211, 616, 626, 715, 734, 779, 784, 1015
MseI	TTAA	2 cut(s)	116, 353
MslI	CAYNNNNRTG	2 cut(s)	392, 882
MspI	CCGG	1 cut(s)	609
MspR9I	CCNGG	3 cut(s)	610, 644, 701
MvaI	CCWGG	2 cut(s)	644, 701
MwoI	GCNNNNNNNGC	1 cut(s)	509
NciI	CCSGG	1 cut(s)	610
NdeII	GATC	5 cut(s)	86, 627, 1052, 1080, 1091
NlaIII	CATG	4 cut(s)	28, 881, 967, 1134
NlaIV	GGNNCC	3 cut(s)	613, 614, 1093
NmuCI	GTSAC	1 cut(s)	727
NsbI	TGCGCA	1 cut(s)	450
NspI	RCATGY	1 cut(s)	967
PciI	ACATGT	1 cut(s)	963
PfeI	GAWTC	4 cut(s)	71, 186, 585, 1031
PflMI	CCANNNNNTGG	1 cut(s)	847
PfoI	TCCNGGA	1 cut(s)	608
PkrI	GCNGC	1 cut(s)	448
PleI	GAGTC	3 cut(s)	264, 734, 1021
PpsI	GAGTC	3 cut(s)	264, 734, 1021
PpuMI	RGGWCCY	1 cut(s)	612
PscI	ACATGT	1 cut(s)	963
Psp5II	RGGWCCY	1 cut(s)	612
Psp6I	CCWGG	2 cut(s)	642, 699
PspGI	CCWGG	2 cut(s)	642, 699
PspN4I	GGNNCC	3 cut(s)	613, 614, 1093
PspPI	GGNCC	1 cut(s)	612
PspPPI	RGGWCCY	1 cut(s)	612
PsuI	RGATCY	1 cut(s)	1091
RsaI	GTAC	2 cut(s)	123, 814
RsaNI	GTAC	2 cut(s)	122, 813
RseI	CAYNNNNRTG	2 cut(s)	392, 882
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	116, 353
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	5 cut(s)	86, 627, 1052, 1080, 1091
Sau96I	GGNCC	1 cut(s)	612
SchI	GAGTC	3 cut(s)	264, 735, 1022
ScrFI	CCNGG	3 cut(s)	610, 644, 701
SduI	GDGCHC	2 cut(s)	699, 1127
SfaNI	GCATC	3 cut(s)	657, 989, 1047
SfcI	CTRYAG	1 cut(s)	505
SinI	GGWCC	1 cut(s)	612
SmiMI	CAYNNNNRTG	2 cut(s)	392, 882
SmlI	CTYRAG	4 cut(s)	302, 617, 715, 770
SmoI	CTYRAG	4 cut(s)	302, 617, 715, 770
Sse9I	AATT	5 cut(s)	380, 623, 759, 782, 835
SsiI	CCGC	1 cut(s)	891
SspMI	CTAG	4 cut(s)	477, 488, 897, 1071
StyD4I	CCNGG	3 cut(s)	608, 642, 699
TaaI	ACNGT	3 cut(s)	391, 812, 817
TaiI	ACGT	3 cut(s)	130, 159, 311
TaqI	TCGA	5 cut(s)	7, 153, 273, 344, 1055
TasI	AATT	5 cut(s)	380, 623, 759, 782, 835
TatI	WGTACW	1 cut(s)	121
TfiI	GAWTC	4 cut(s)	71, 186, 585, 1031
Tru1I	TTAA	2 cut(s)	116, 353
Tru9I	TTAA	2 cut(s)	116, 353
TscAI	CASTG	4 cut(s)	116, 394, 658, 736
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	2 cut(s)	435, 866
TspRI	CASTG	4 cut(s)	116, 394, 658, 736
Van91I	CCANNNNNTGG	1 cut(s)	847
VpaK11BI	GGWCC	1 cut(s)	612
XceI	RCATGY	1 cut(s)	967
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	4 cut(s)	477, 488, 897, 1071
ZraI	GACGTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.